mRNA_E-siliculosus-1a_F_contig1404.2394.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1404.2394.1
Unique NamemRNA_E-siliculosus-1a_F_contig1404.2394.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2394.1 vs. uniprot
Match: A0A6H5L2S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.440e-37
Identity = 75/83 (90.36%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:   79 MVSLKRALRLYLQQAPLDALVGELKASAAESRGEDETGLRSSTSLSSLWTSLDFQEKVAAELLDCPIAAEFPPRLEYVSRVTK 327
            MV LKRALRLYLQQAPLDALVGELKASAAESR EDETGL SS   SSLWTSL FQE+VAAELLDCPIAAEFPPRLEYVSRVTK
Sbjct:    1 MVYLKRALRLYLQQAPLDALVGELKASAAESRREDETGLPSS---SSLWTSLGFQERVAAELLDCPIAAEFPPRLEYVSRVTK 80
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BLAST of mRNA_E-siliculosus-1a_F_contig1404.2394.1 vs. uniprot
Match: D7FXM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM3_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.750e-36
Identity = 75/83 (90.36%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   79 MVSLKRALRLYLQQAPLDALVGELKASAAESRGEDETGLRSSTSLSSLWTSLDFQEKVAAELLDCPIAAEFPPRLEYVSRVTK 327
            MVSLKRALRLYLQQAPL+ALVGELKASAAESRGEDETGLRSSTS  S WTSL FQE+VA ELLDCPIAAEF PRLEYVSRVTK
Sbjct:    1 MVSLKRALRLYLQQAPLEALVGELKASAAESRGEDETGLRSSTSSLSSWTSLGFQERVATELLDCPIAAEFTPRLEYVSRVTK 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1404.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2S8_9PHAE3.440e-3790.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXM3_ECTSI5.750e-3690.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1404contigE-siliculosus-1a_F_contig1404:1508..3469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size507
Model size587
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
Ec32 orthologEc-28_002280.1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
EggNOG OGsKOG2497@1,KOG2497@2759
EggNOG free text desc.methyltransferase activity
Seed eggNOG ortholog2880.D7FXM3
Seed ortholog evalue8.9e-31
Seed ortholog score140.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1404.2394.1prot_E-siliculosus-1a_F_contig1404.2394.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1404 1508..3391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.489211-CDS-E-siliculosus-1a_F_contig1404:1507..17651622927919.489211-CDS-E-siliculosus-1a_F_contig1404:1507..1765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 1508..1765 -
1696318736.936196-CDS-E-siliculosus-1a_F_contig1404:1507..17651696318736.936196-CDS-E-siliculosus-1a_F_contig1404:1507..1765Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 1508..1765 -
1622927919.6150327-CDS-E-siliculosus-1a_F_contig1404:2158..23651622927919.6150327-CDS-E-siliculosus-1a_F_contig1404:2158..2365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 2159..2365 -
1696318736.9467013-CDS-E-siliculosus-1a_F_contig1404:2158..23651696318736.9467013-CDS-E-siliculosus-1a_F_contig1404:2158..2365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 2159..2365 -
1622927919.655989-CDS-E-siliculosus-1a_F_contig1404:3349..33911622927919.655989-CDS-E-siliculosus-1a_F_contig1404:3349..3391Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 3350..3391 -
1696318736.9561567-CDS-E-siliculosus-1a_F_contig1404:3349..33911696318736.9561567-CDS-E-siliculosus-1a_F_contig1404:3349..3391Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1404 3350..3391 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.6691976-UTR-E-siliculosus-1a_F_contig1404:3391..34691622927919.6691976-UTR-E-siliculosus-1a_F_contig1404:3391..3469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 3392..3469 -
1696318736.965857-UTR-E-siliculosus-1a_F_contig1404:3391..34691696318736.965857-UTR-E-siliculosus-1a_F_contig1404:3391..3469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1404 3392..3469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1404.2394.1

>prot_E-siliculosus-1a_F_contig1404.2394.1 ID=prot_E-siliculosus-1a_F_contig1404.2394.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=169bp
MVSLKRALRLYLQQAPLDALVGELKASAAESRGEDETGLRSSTSLSSLWT
SLDFQEKVAAELLDCPIAAEFPPRLEYVSRVTKSAAWKPNRRVPERDCSY
YYARGLDYGTCTARVKASSLLNKAGSKNLWNACSRSFALVEWFEPIPFCV
DYVILPLASWVTSTRPPLS
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mRNA from alignment at E-siliculosus-1a_F_contig1404:1508..3469-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1404.2394.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2394.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1962bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:1508..3469- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGTGTCGGCGGCTGTCGGATAAGAGGTGATATGCTACCGGAGCAGGAT
ACACTGCGTGTGTGACGAAGGGGCGAGAATGGTCTCCTTGAAACGAGCCC
TCCGACTCTACCTTCAGCAGGTGAAGATTTTGTCTCCTGTGGTGCGGAAG
TGCCTCCTCTCTCCCGCCCCGAAGGTCCCTGATGTCCCGATGTCGCCATG
CGCAGCAACAGCAGTTCCTTGGTGAAGCACACCCTACAACTCATATTCGA
AGATGTTTTGGACCGTGGAATCCCACAGCAGCAGCAGCAGCAGCAGCAGC
AGTGTCGGTGCACCCCGCGTTCCATGTCGCACCGATTTTGCGTGTGGACC
CGACCCGACCCTGGCAAACGGCAGAGCTGTTCCGCCGTTAAGAGTAGAGC
GTATGTGTGTTCGTTTGTATGCACAACATGCGCAGATAACTTCCTGGTAA
GTACCTGTTAGAAGCATCGGCAAGGATCTCGGGGAGATTCGCTGCGAGAG
ATCTACGGTACAGCAGTACGACAGCAATGCAGCAGCCCAGCAGCAGCAGT
AGATTATGCATGCAAAAGCGACAATGGTGTGAAAATTGCATGCAAGTGTT
TCTTGTGTTCACAACCCCCCCCCTCACTGCTGTGTGTACCTTAGAGCAGC
GCTGATAAGCATGTTCGTCCGCGGCGAAACAATCGCAGTCAGCCAACCCT
TGGTGACCAATTGTCTTGCGGAAAACGTGCGACACCTGCAGTGCTTGGTC
ATTGTTTACCTCAACACACCATCGTGTGCAGTATCGCCCAACTTACAATT
GGTAGCGGCTACTGCTGTATGCTGTAGGCTGAATAGGACAGCCCTTCCCG
CACCCCCAGGGCATGGGACGGGAACAAATTGTTGTTGTTTCTTGTCTTGT
CGTGGTTCCCAAAGCTGTGAGCTCGGGTTGTTTTCCTAGATTCCACGCGC
CCAAAGAACAAAGCGAACAGGCACACGGTCTTCACCGGCAAGTCAGTTAG
CGCTGCCGATGCGGGAGACACACACACGGCATGTGCATCACACTTCCTCC
CCCTATCAACTTGCGAGTGATTCTGCGGTGACCCCACCCCTCCTCGCCTG
CAAGGCTCCTCTGGATGCGCTCGTGGGGGAGCTCAAAGCTTCCGCGGCAG
AAAGCCGGGGGGAGGACGAAACTGGACTACGGTCGTCGACGTCGTTGTCG
TCGTTGTGGACCTCCCTTGATTTTCAGGAGAAGGTTGCGGCGGAGTTGCT
TGACTGTCCAATCGCGGCGGAGTTTCCTCCTCGCTTGGAGTACGTCTCCC
GGGTCACCAAGGTGCGAGAAATCACGTGAAACGAAACGAGACATTGTCGT
GCTTGATGTAATGCCAACCTCCTTGCAGTATAGCCTTCGCGAGGGTATGA
TACAGCTTGGTGATAGTAGGGGGGGTTGGTGGGGGGTGAGGGTTAGGGAT
ACGAAACCCCCCGTCTCTATCGTCGTCCACAAACCCAAAAAACGTACTTT
CTGAAATTGAATAAGAGCCCTTTTTGCAAGAAAATCTCGGAGAAGGCGTT
CCCGTCGTTGGGGGCATGGGCCCTATTGCACTCACCTCTGCGTTCGAACA
GCTTCTTTTACTGCACGTTTGCGTGCAAAAGCTTGGCACCCACCTCTGCG
TCCGAAGAGCTTCTCCTTACTGCACGTTTTGCGTGCAAATGCTTGGAGTG
AAAGTCGGCGGCCTGGAAACCCAACCGGCGTGTTCCGGAGCGCGACTGTT
CATACTACTATGCCCGGGGTCTGGATTACGGCACATGTACCGCGAGGGTC
AAAGCATCAAGCTTGTTAAACAAAGCTGGGTCAAAAAATCTTTGGAATGC
ATGTTCGCGGTCGTTCGCCCTCGTCGAGTGGTTTGAACCCATCCCCTTCT
GCGTGGACTACGTCATCCTGCCGCTAGCTTCTTGGGTAACCTCGACAAGG
CCACCGCTTTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1404:1508..3469-

>mRNA_E-siliculosus-1a_F_contig1404.2394.1 ID=mRNA_E-siliculosus-1a_F_contig1404.2394.1|Name=mRNA_E-siliculosus-1a_F_contig1404.2394.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1404:1508..3469- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCTCCTTGAAACGAGCCCTCCGACTCTACCTTCAGCAGATGGTCTC
CTTGAAACGAGCCCTCCGACTCTACCTTCAGCAGGCTCCTCTGGATGCGC
TCGTGGGGGAGCTCAAAGCTTCCGCGGCAGAAAGCCGGGGGGAGGACGAA
ACTGGACTACGGTCGTCGACGTCGTTGTCGTCGTTGTGGACCTCCCTTGA
TTTTCAGGAGAAGGTTGCGGCGGAGTTGCTTGACTGTCCAATCGCGGCGG
AGTTTCCTCCTCGCTTGGAGTACGTCTCCCGGGTCACCAAGGCTCCTCTG
GATGCGCTCGTGGGGGAGCTCAAAGCTTCCGCGGCAGAAAGCCGGGGGGA
GGACGAAACTGGACTACGGTCGTCGACGTCGTTGTCGTCGTTGTGGACCT
CCCTTGATTTTCAGGAGAAGGTTGCGGCGGAGTTGCTTGACTGTCCAATC
GCGGCGGAGTTTCCTCCTCGCTTGGAGTACGTCTCCCGGGTCACCAAGTC
GGCGGCCTGGAAACCCAACCGGCGTGTTCCGGAGCGCGACTGTTCATACT
ACTATGCCCGGGGTCTGGATTACGGCACATGTACCGCGAGGGTCAAAGCA
TCAAGCTTGTTAAACAAAGCTGGGTCAAAAAATCTTTGGAATGCATGTTC
GCGGTCGTTCGCCCTCGTCGAGTGGTTTGAACCCATCCCCTTCTGCGTGG
ACTACGTCATCCTGCCGCTAGCTTCTTGGGTAACCTCGACAAGGCCACCG
CTTTCGTCGGCGGCCTGGAAACCCAACCGGCGTGTTCCGGAGCGCGACTG
TTCATACTACTATGCCCGGGGTCTGGATTACGGCACATGTACCGCGAGGG
TCAAAGCATCAAGCTTGTTAAACAAAGCTGGGTCAAAAAATCTTTGGAAT
GCATGTTCGCGGTCGTTCGCCCTCGTCGAGTGGTTTGAACCCATCCCCTT
CTGCGTGGACTACGTCATCCTGCCGCTAGCTTCTTGGGTAACCTCGACAA
GGCCACCGCTTTCG
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