mRNA_E-siliculosus-1a_F_contig1403.2386.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1403.2386.1
Unique NamemRNA_E-siliculosus-1a_F_contig1403.2386.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1403.2386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1403contigE-siliculosus-1a_F_contig1403:9497..9715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size108
Model size219
Exons1
Ec32 orthologEc-05_004125.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.9996157-UTR-E-siliculosus-1a_F_contig1403:9496..96071622927918.9996157-UTR-E-siliculosus-1a_F_contig1403:9496..9607Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1403 9497..9607 -
1696318736.7369387-UTR-E-siliculosus-1a_F_contig1403:9496..96071696318736.7369387-UTR-E-siliculosus-1a_F_contig1403:9496..9607Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1403 9497..9607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.0149531-CDS-E-siliculosus-1a_F_contig1403:9607..97151622927919.0149531-CDS-E-siliculosus-1a_F_contig1403:9607..9715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1403 9608..9715 -
1696318736.7489934-CDS-E-siliculosus-1a_F_contig1403:9607..97151696318736.7489934-CDS-E-siliculosus-1a_F_contig1403:9607..9715Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1403 9608..9715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1403.2386.1prot_E-siliculosus-1a_F_contig1403.2386.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1403 9608..9715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1403.2386.1

>prot_E-siliculosus-1a_F_contig1403.2386.1 ID=prot_E-siliculosus-1a_F_contig1403.2386.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2386.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=36bp
THWCPLGVFVAGCPVIIGRSRCKEGSLLDGRKGNT*
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mRNA from alignment at E-siliculosus-1a_F_contig1403:9497..9715-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1403.2386.1 ID=mRNA_E-siliculosus-1a_F_contig1403.2386.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2386.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=219bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1403:9497..9715- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACACATTGGTGTCCATTGGGTGTGTTTGTAGCCGGATGTCCGGTAATAAT
TGGCCGGTCGCGTTGTAAGGAAGGTAGTTTGTTGGACGGACGGAAGGGAA
ACACTTGAGGTGGGTGAAGAAGCATTCTATTGCATCGGGGGGGGGGAACC
GAGCACACGGGGCCGCGGTGCGCGCGTTCTTGTTTAGTTTTCATGGACCG
CGCTGTACCAGCTGACGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1403:9497..9715-

>mRNA_E-siliculosus-1a_F_contig1403.2386.1 ID=mRNA_E-siliculosus-1a_F_contig1403.2386.1|Name=mRNA_E-siliculosus-1a_F_contig1403.2386.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1403:9497..9715- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACACATTGGTGTCCATTGGGTGTGTTTGTAGCCGGATGTCCGGTAATAAT
TGGCCGGTCGCGTTGTAAGGAAGGTAGTTTGTTGGACGGACGGAAGGGAA
ACACTTGAACACATTGGTGTCCATTGGGTGTGTTTGTAGCCGGATGTCCG
GTAATAATTGGCCGGTCGCGTTGTAAGGAAGGTAGTTTGTTGGACGGACG
GAAGGGAAACACTTGA
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