mRNA_E-siliculosus-1a_F_contig14024.2384.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14024.2384.1
Unique NamemRNA_E-siliculosus-1a_F_contig14024.2384.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: A0A0F9VWP1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9VWP1_9ZZZZ)

HSP 1 Score: 669 bits (1727), Expect = 1.070e-235
Identity = 357/396 (90.15%), Postives = 369/396 (93.18%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL AT  T DP RHDELNLRFELLYSRMTLL  GEV +LLQ+I +ARELL QIHQQLDVLDPMFEPYGVLEQLSV EL+ ELQ L  LTERLVIAINGYLAESAT ER QLSQLY LLMTLIIGMSLAAFLVI+FLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRE++SL+QVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGL LTVNVD LVP WVLVDEGRLRQILLNLIANAIKFT HG++NV++ STVEELIFEVSDTGCGLSEPQQARLFEPF Q DESVARRFGGTGLGLAICKRLCDAM GQ
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAATRVTLDPARHDELNLRFELLYSRMTLLNEGEVSSLLQEISAARELLLQIHQQLDVLDPMFEPYGVLEQLSVAELEVELQTLTRLTERLVIAINGYLAESATEERAQLSQLYMLLMTLIIGMSLAAFLVIIFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRETISLTQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLVLTVNVDPLVPEWVLVDEGRLRQILLNLIANAIKFTAHGQVNVRVSSTVEELIFEVSDTGCGLSEPQQARLFEPFQQADESVARRFGGTGLGLAICKRLCDAMNGQ 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: A0A651DF25_HALSX (Histidine kinase n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A651DF25_HALSX)

HSP 1 Score: 636 bits (1640), Expect = 1.660e-222
Identity = 339/396 (85.61%), Postives = 360/396 (90.91%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQL+NHLL AT ET DP RHDEL+LRFELLYSR+TLL  GEV  LL +I +A  LLQQIHQQLDVLDPMFEPYGVLEQ+ V E++ ELQ L   TERLVIAINGYLAESAT ER QLSQLYKLLMTLIIGMSLAA LVIVFLVREMRESAAIRRQQEQLGLKLEV AEQAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRESVS +QVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTA++ L+DSVVVLF PRAK+KGL+LTVNVDTLVP WVLVDEGRLRQILLNLIANAIKFTD G + V++ STVE+L+FEVSDTGCGLSE QQARLFEPF Q DESVARRFGGTGLGLAICKRL DAMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLMNHLLAATRETLDPARHDELHLRFELLYSRITLLNEGEVSNLLHEINAASGLLQQIHQQLDVLDPMFEPYGVLEQMPVAEIEAELQVLTRFTERLVIAINGYLAESATEERAQLSQLYKLLMTLIIGMSLAALLVIVFLVREMRESAAIRRQQEQLGLKLEVAAEQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSPTQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTAIRSLLDSVVVLFVPRAKIKGLSLTVNVDTLVPEWVLVDEGRLRQILLNLIANAIKFTDQGGVTVRVSSTVEQLLFEVSDTGCGLSEKQQARLFEPFQQADESVARRFGGTGLGLAICKRLSDAMQGE 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: L9U9D7_9GAMM (Histidine kinase n=14 Tax=Halomonas TaxID=2745 RepID=L9U9D7_9GAMM)

HSP 1 Score: 611 bits (1575), Expect = 1.290e-212
Identity = 326/396 (82.32%), Postives = 353/396 (89.14%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL AT E   P  H+ELNLRFELLYSR+TLL +GEV  LLQ I +ARELL++I QQLDVLD +FEPYGV +QL +  L+ ELQ L  LTERLVIAINGYLAESAT ER QLS LYKLLM+LIIGMSLAAFLVI FLVREMRESAAIRR QEQLG +LEVTA+QAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRES S +QVEDYA TIH+SANQLLAMINEILDFSKIEAGHLTLETSPT LKPL+DSVVVLFAPRAKMKGL L+VNVD LVP WVLVD GRLRQILLNLIANAIKFTDHG+++V++ STVE+L+FEVSDTGCGLSE QQ RLFEPF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAATREPITPTAHEELNLRFELLYSRITLLNDGEVSNLLQQIDTARELLEEIQQQLDVLDIIFEPYGVFDQLPIAALEDELQVLTQLTERLVIAINGYLAESATEERAQLSLLYKLLMSLIIGMSLAAFLVIAFLVREMRESAAIRRSQEQLGRQLEVTAKQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESASPAQVEDYAHTIHDSANQLLAMINEILDFSKIEAGHLTLETSPTELKPLVDSVVVLFAPRAKMKGLTLSVNVDALVPAWVLVDAGRLRQILLNLIANAIKFTDHGDVSVRVSSTVEQLLFEVSDTGCGLSEQQQQRLFEPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: UPI001F0D8A83 (ATP-binding protein n=1 Tax=Halomonas neptunia TaxID=115551 RepID=UPI001F0D8A83)

HSP 1 Score: 603 bits (1555), Expect = 1.670e-209
Identity = 324/402 (80.60%), Postives = 353/402 (87.81%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPY------GVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL  T     P  HDELNLRFELLYSR+TLL  GEV  LLQ+I +ARELL QI QQLDVLD M +PY      GV++QL + E++ ELQ L  LTERLVIAINGYLAESAT ER QLS LYKLLM+LI+GMSLAAFLVI FLVREMRESAAIRR+QEQLG +LEVTA+QAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRES S +QVEDYA TIH+SANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAK+KGLALTV+VD LVP+WVL+D GRLRQILLNLIANAIKFTD GE++V++ STVE+L+FEV DTGCGLSE QQ RLFEPF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAVTRGPLSPAAHDELNLRFELLYSRITLLNEGEVSTLLQEIDTARELLSQIQQQLDVLDTMLDPYEVFESLGVVDQLPIVEIENELQTLTRLTERLVIAINGYLAESATEERAQLSLLYKLLMSLIVGMSLAAFLVIAFLVREMRESAAIRREQEQLGRQLEVTAKQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESASPAQVEDYAHTIHDSANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKVKGLALTVHVDPLVPDWVLIDAGRLRQILLNLIANAIKFTDRGEVSVKVSSTVEQLLFEVIDTGCGLSEQQQERLFEPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 451          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: G4F145_9GAMM (Histidine kinase n=6 Tax=Halomonas TaxID=2745 RepID=G4F145_9GAMM)

HSP 1 Score: 593 bits (1528), Expect = 2.040e-205
Identity = 323/402 (80.35%), Postives = 347/402 (86.32%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGV------LEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL  T E      HDELNLRFELLYSR+TLL  GEV  LLQ I +ARELL QI QQLDVLD MF PYG       ++ L V  L+ ELQAL  LTERLVIAINGYLAESAT ER QLS LYKLLM+LI+GMSLAAFLVI FLVREMRESAA+RR+QEQLG +LEVTA+QAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRES S +QVEDYA TIH+SANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVL APRAK+KGL LTVNVD LVP WVLVD  RLRQILLNLIANAIKFTDHGE++V++ STVE+L+FEV DTGCGLSE QQ RLF+PF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAVTREPLTSETHDELNLRFELLYSRITLLNEGEVSTLLQQIGTARELLGQIQQQLDVLDSMFYPYGGPEIDGRIDPLPVAVLEEELQALTQLTERLVIAINGYLAESATEERAQLSLLYKLLMSLIVGMSLAAFLVIAFLVREMRESAAVRREQEQLGQQLEVTAKQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESASPAQVEDYAHTIHDSANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLLAPRAKVKGLTLTVNVDPLVPAWVLVDAARLRQILLNLIANAIKFTDHGEVSVKVSSTVEQLLFEVIDTGCGLSEQQQERLFQPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 451          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: A0A246S5M1_9GAMM (Histidine kinase n=6 Tax=Halomonas TaxID=2745 RepID=A0A246S5M1_9GAMM)

HSP 1 Score: 591 bits (1524), Expect = 7.950e-205
Identity = 325/402 (80.85%), Postives = 348/402 (86.57%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGV------LEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL  T E       +ELNLRFELLYSRMTLL +GEVR L+Q I +ARELL QI QQLD+LD MF P         L++L V  L+ ELQAL  LTERLVIAINGYLAESAT ER QLS LYKLLM+LIIGMSLAAFLVI FLVREMRESAAIRR QEQLG +LEVTA+QAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRES S +QVEDYA TIH+SANQLLAMINEILDFSKIEAGHLTLETSPT LKPLIDSVVVLFAPRAKMKGLAL VNVD+LVP WV VD GRLRQILLNLIANAIKFTDHGE++V++ STVE+L+FEVSDTGCGLSE QQ RLFEPF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAVTREPLSAKAREELNLRFELLYSRMTLLNDGEVRNLMQQIDTARELLGQIQQQLDLLDSMFTPRTEGGSDEELDRLPVASLEEELQALTRLTERLVIAINGYLAESATEERAQLSLLYKLLMSLIIGMSLAAFLVIAFLVREMRESAAIRRIQEQLGRQLEVTAKQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESASPAQVEDYAHTIHDSANQLLAMINEILDFSKIEAGHLTLETSPTELKPLIDSVVVLFAPRAKMKGLALKVNVDSLVPAWVQVDAGRLRQILLNLIANAIKFTDHGEVSVRVSSTVEQLLFEVSDTGCGLSEQQQQRLFEPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 451          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: UPI00201F9FA8 (ATP-binding protein n=1 Tax=Halomonas olivaria TaxID=390919 RepID=UPI00201F9FA8)

HSP 1 Score: 585 bits (1507), Expect = 2.880e-202
Identity = 310/396 (78.28%), Postives = 346/396 (87.37%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRDTVQLLNHLL AT     P+  DELNLRFELLYSR+TLL  GEV +LLQ I +ARELL QI QQLD LDPMFEP+  + QL +TEL+ ELQ LA LTER VIAINGYLAESAT ER  LS LYKLLM+LIIGMSLA  LVIVFLVREMRESAA RR+QEQL  +LEVTA QAQAA+ AKSDFLAMVSHEIRTPLNGVIGMSELLRE VSLSQVEDYARTIH+SANQLLAMINEILDFSKIEAGHLTL+TSPTALKPL+DSV+ LF PRA+ KGL L++++D LVP WV++D GRLRQILLNLIANAIKFTDHGE++++++S++ +L FEVSDTGCGL++ QQA LFEPF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDTVQLLNHLLAATRGPLSPVMQDELNLRFELLYSRITLLKEGEVSSLLQSISAARELLNQIQQQLDTLDPMFEPHESVTQLPITELETELQVLARLTERFVIAINGYLAESATEERALLSTLYKLLMSLIIGMSLAVLLVIVFLVREMRESAAARREQEQLSRQLEVTARQAQAANHAKSDFLAMVSHEIRTPLNGVIGMSELLREPVSLSQVEDYARTIHDSANQLLAMINEILDFSKIEAGHLTLDTSPTALKPLVDSVMALFEPRAQEKGLRLSLHIDPLVPPWVMIDAGRLRQILLNLIANAIKFTDHGEVSLRLYSSIGQLTFEVSDTGCGLNKEQQATLFEPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: A0A365TT50_9GAMM (Histidine kinase n=1 Tax=Halomonas sulfidaeris TaxID=115553 RepID=A0A365TT50_9GAMM)

HSP 1 Score: 584 bits (1506), Expect = 3.580e-202
Identity = 314/396 (79.29%), Postives = 340/396 (85.86%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL   H    P  HDELNLRFELLYSR+TLL  GEV  LLQ+I +A  LL+QI  QLDVLD MFEPY V+EQL V  L+  LQ L  LTERLVI INGYLA+SAT ER QLS LYKLLMTLI+GMSLAAFLVI FLVREMRESAAIRR QEQLG +LEVTA+QAQAA+QAKSDFLAMVSHEIRTPLNGVIGMSELLRES S +Q+EDYA TIH+SANQLLAMINEILDFSKIEAGHLTLET+PT LKPLIDSVV+L APRA  KGL+L V VD LVP WVLVD GRLRQILLNLIANAIKFTD G+++V++ STVE L+FEV DTGCG+SE QQ RLFEPFHQ DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAVAHGPITPAAHDELNLRFELLYSRITLLNEGEVSTLLQEIDTASALLRQIQHQLDVLDSMFEPYEVVEQLPVPALEENLQTLTRLTERLVIVINGYLAKSATEERAQLSLLYKLLMTLIVGMSLAAFLVIAFLVREMRESAAIRRNQEQLGQQLEVTAKQAQAANQAKSDFLAMVSHEIRTPLNGVIGMSELLRESTSPAQIEDYAHTIHDSANQLLAMINEILDFSKIEAGHLTLETAPTELKPLIDSVVLLLAPRATAKGLSLRVYVDPLVPVWVLVDAGRLRQILLNLIANAIKFTDRGDVSVKVSSTVERLLFEVIDTGCGVSEQQQERLFEPFHQADESVARRFGGTGLGLAICKRLSEAMQGR 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: A0A511ULF0_9GAMM (Histidine kinase n=1 Tax=Halovibrio variabilis TaxID=31910 RepID=A0A511ULF0_9GAMM)

HSP 1 Score: 571 bits (1471), Expect = 7.770e-197
Identity = 306/396 (77.27%), Postives = 341/396 (86.11%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWVVYKLDRD VQLLNHLL  T E      HDELNLRFELLYSR+TLL +GEV  LL++I  A ELL+QI +QLDVLD MFEPY   EQ+ VT L+ EL +L  LTERLVI INGYLAESAT ER QLS LYKLLM+LI+GMSLAAFLV+ FLVREMRESAAIRR+Q QLG +LE TA+QAQAA+QAKSDFL MVSHEIRTPLNGVIGMSELLRE VS +QV+DYARTI +S +QLLAMINEILDFSKIEAGHLTLETSPTALKPL++SV VL APRA +KGLAL+VN+D LVP+WV+VD GRLRQILLNLIANAIKFTD GE++V++ STVE+L+FEV DTGCGLS  QQ RLFEPF Q D SVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVVYKLDRDAVQLLNHLLAVTREPSAQSIHDELNLRFELLYSRITLLNDGEVNTLLEEIDKASELLRQIQRQLDVLDIMFEPYRAHEQMPVTALEDELASLTRLTERLVITINGYLAESATQERAQLSWLYKLLMSLIVGMSLAAFLVVAFLVREMRESAAIRREQAQLGQQLEATAKQAQAANQAKSDFLTMVSHEIRTPLNGVIGMSELLREPVSPAQVDDYARTIQDSGHQLLAMINEILDFSKIEAGHLTLETSPTALKPLVNSVTVLLAPRANIKGLALSVNIDPLVPDWVMVDAGRLRQILLNLIANAIKFTDSGEVSVRVSSTVEKLLFEVRDTGCGLSPQQQTRLFEPFQQADASVARRFGGTGLGLAICKRLSEAMQGR 445          
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Match: F7SHW0_9GAMM (Histidine kinase n=3 Tax=Halomonas TaxID=2745 RepID=F7SHW0_9GAMM)

HSP 1 Score: 564 bits (1453), Expect = 3.970e-194
Identity = 301/396 (76.01%), Postives = 331/396 (83.59%), Query Frame = 1
Query:    1 QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYSRMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVTELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMSLAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLAMVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEILDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLVPNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTGCGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ 1188
            QSLREDTAWV YKLDRD +QL NHLL  T     P   D+LNLRFELLYSR+ LL  GEV  LL++I  A+ LL QI QQLD LDPMFEPY  L QL +TEL+ EL  L  LTER VIAINGYLAESAT ER  LS LYKLLM+L++GMSLA  LVIVFLVREMRESAA RR+QEQL  +LEVTA QAQAA+ AKSDFLAMVSHEIRTPLNGVIGMSELLRE  SL+QVEDYARTIH+SANQLLAMINEILDFSKIEAGHLTLETSPTALKPL+DSV+ LF PRAK KGL LT+ +D LVP WV++D  RLRQILLNLIANAIKFTDHGE+N+ I+STV+ L F+V DTGCGL+E QQA LFEPF Q DESVARRFGGTGLGLAICKRL +AMQG+
Sbjct:   50 QSLREDTAWVAYKLDRDAIQLFNHLLATTRGPLSPSDQDDLNLRFELLYSRIMLLQEGEVSLLLENISMAKALLAQIQQQLDTLDPMFEPYASLTQLPITELEEELLVLTRLTERFVIAINGYLAESATEERVLLSVLYKLLMSLLVGMSLAVLLVIVFLVREMRESAAARREQEQLSRQLEVTATQAQAANHAKSDFLAMVSHEIRTPLNGVIGMSELLREPSSLAQVEDYARTIHDSANQLLAMINEILDFSKIEAGHLTLETSPTALKPLVDSVISLFEPRAKAKGLQLTLYIDPLVPGWVMIDASRLRQILLNLIANAIKFTDHGEVNICIYSTVKCLSFDVRDTGCGLNEEQQASLFEPFQQADESVARRFGGTGLGLAICKRLSEAMQGR 445          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14024.2384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9VWP1_9ZZZZ1.070e-23590.15Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A651DF25_HALSX1.660e-22285.61Histidine kinase n=1 Tax=Halomonas sp. TaxID=14862... [more]
L9U9D7_9GAMM1.290e-21282.32Histidine kinase n=14 Tax=Halomonas TaxID=2745 Rep... [more]
UPI001F0D8A831.670e-20980.60ATP-binding protein n=1 Tax=Halomonas neptunia Tax... [more]
G4F145_9GAMM2.040e-20580.35Histidine kinase n=6 Tax=Halomonas TaxID=2745 RepI... [more]
A0A246S5M1_9GAMM7.950e-20580.85Histidine kinase n=6 Tax=Halomonas TaxID=2745 RepI... [more]
UPI00201F9FA82.880e-20278.28ATP-binding protein n=1 Tax=Halomonas olivaria Tax... [more]
A0A365TT50_9GAMM3.580e-20279.29Histidine kinase n=1 Tax=Halomonas sulfidaeris Tax... [more]
A0A511ULF0_9GAMM7.770e-19777.27Histidine kinase n=1 Tax=Halovibrio variabilis Tax... [more]
F7SHW0_9GAMM3.970e-19476.01Histidine kinase n=3 Tax=Halomonas TaxID=2745 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14024contigE-siliculosus-1a_F_contig14024:3..1190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1188
Model size1188
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.T
EggNOG OGs1NRP8@1224,1SKTW@1236,1XH82@135619,COG0642@1,COG2205@2
EggNOG free text desc.PhoQ Sensor
Seed eggNOG ortholog1380358.JADJ01000017_gene1512
Seed ortholog evalue5.4e-172
Seed ortholog score610.5
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.7391582-CDS-E-siliculosus-1a_F_contig14024:2..11901622927918.7391582-CDS-E-siliculosus-1a_F_contig14024:2..1190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14024 3..1190 -
1696318736.6470442-CDS-E-siliculosus-1a_F_contig14024:2..11901696318736.6470442-CDS-E-siliculosus-1a_F_contig14024:2..1190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14024 3..1190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14024.2384.1prot_E-siliculosus-1a_F_contig14024.2384.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14024 3..1190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14024.2384.1

>prot_E-siliculosus-1a_F_contig14024.2384.1 ID=prot_E-siliculosus-1a_F_contig14024.2384.1|Name=mRNA_E-siliculosus-1a_F_contig14024.2384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=396bp
QSLREDTAWVVYKLDRDTVQLLNHLLVATHETFDPLRHDELNLRFELLYS
RMTLLTNGEVRALLQDIPSARELLQQIHQQLDVLDPMFEPYGVLEQLSVT
ELDRELQALAMLTERLVIAINGYLAESATAERTQLSQLYKLLMTLIIGMS
LAAFLVIVFLVREMRESAAIRRQQEQLGLKLEVTAEQAQAASQAKSDFLA
MVSHEIRTPLNGVIGMSELLRESVSLSQVEDYARTIHESANQLLAMINEI
LDFSKIEAGHLTLETSPTALKPLIDSVVVLFAPRAKMKGLALTVNVDTLV
PNWVLVDEGRLRQILLNLIANAIKFTDHGEINVQIFSTVEELIFEVSDTG
CGLSEPQQARLFEPFHQVDESVARRFGGTGLGLAICKRLCDAMQGQ
back to top

mRNA from alignment at E-siliculosus-1a_F_contig14024:3..1190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14024.2384.1 ID=mRNA_E-siliculosus-1a_F_contig14024.2384.1|Name=mRNA_E-siliculosus-1a_F_contig14024.2384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1188bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14024:3..1190- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAAGCCTGCGAGAAGATACTGCCTGGGTCGTCTACAAGTTAGACCGTGA TACGGTTCAATTATTGAATCATTTACTGGTGGCTACTCACGAAACATTCG ATCCCTTGAGGCACGACGAGTTAAATCTGCGCTTTGAATTGCTGTATAGC CGGATGACGCTGCTCACTAATGGCGAAGTCAGGGCCCTATTACAAGATAT TCCTTCTGCGCGTGAGTTGCTGCAACAAATCCACCAGCAGCTTGATGTGC TTGATCCTATGTTTGAGCCTTATGGTGTGCTTGAGCAGCTATCGGTCACA GAGCTTGATAGAGAGCTACAGGCGCTAGCGATGCTTACTGAGCGTCTAGT GATTGCCATCAATGGTTATCTTGCAGAGTCTGCAACCGCAGAGCGTACCC AACTTAGCCAGCTCTATAAGTTGCTCATGACACTCATCATCGGCATGAGC TTGGCGGCTTTTCTGGTCATCGTCTTTTTGGTGCGCGAAATGCGTGAAAG CGCGGCAATCAGACGGCAGCAGGAGCAGCTTGGGCTGAAACTTGAAGTTA CCGCCGAGCAGGCTCAGGCCGCTAGTCAAGCCAAGTCAGATTTTTTAGCC ATGGTTAGCCATGAAATACGTACGCCATTAAACGGCGTCATTGGCATGAG CGAGCTGCTACGCGAATCGGTTAGCCTCTCGCAGGTAGAGGACTATGCGC GCACGATTCACGAAAGCGCGAATCAATTATTAGCAATGATCAATGAAATT CTCGATTTCTCAAAAATTGAAGCGGGCCACTTAACCCTTGAAACCTCGCC CACTGCATTAAAGCCACTGATCGATAGTGTGGTGGTGTTATTCGCTCCCA GGGCGAAAATGAAGGGTCTCGCACTCACTGTTAACGTCGACACATTAGTG CCTAATTGGGTTCTGGTAGATGAGGGGCGGCTTAGACAGATTTTACTTAA CCTAATTGCCAATGCGATCAAGTTCACTGACCACGGTGAGATTAATGTGC AGATCTTCTCGACGGTAGAGGAGCTTATATTTGAAGTTAGTGATACTGGC TGTGGATTAAGCGAGCCACAGCAAGCGCGCCTCTTTGAGCCTTTTCATCA GGTGGATGAGTCGGTCGCTAGGCGTTTTGGAGGCACCGGCTTAGGGCTGG CGATTTGTAAGCGCCTATGCGATGCGATGCAAGGTCAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14024:3..1190-

>mRNA_E-siliculosus-1a_F_contig14024.2384.1 ID=mRNA_E-siliculosus-1a_F_contig14024.2384.1|Name=mRNA_E-siliculosus-1a_F_contig14024.2384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2376bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14024:3..1190- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAAGCCTGCGAGAAGATACTGCCTGGGTCGTCTACAAGTTAGACCGTGA
TACGGTTCAATTATTGAATCATTTACTGGTGGCTACTCACGAAACATTCG
ATCCCTTGAGGCACGACGAGTTAAATCTGCGCTTTGAATTGCTGTATAGC
CGGATGACGCTGCTCACTAATGGCGAAGTCAGGGCCCTATTACAAGATAT
TCCTTCTGCGCGTGAGTTGCTGCAACAAATCCACCAGCAGCTTGATGTGC
TTGATCCTATGTTTGAGCCTTATGGTGTGCTTGAGCAGCTATCGGTCACA
GAGCTTGATAGAGAGCTACAGGCGCTAGCGATGCTTACTGAGCGTCTAGT
GATTGCCATCAATGGTTATCTTGCAGAGTCTGCAACCGCAGAGCGTACCC
AACTTAGCCAGCTCTATAAGTTGCTCATGACACTCATCATCGGCATGAGC
TTGGCGGCTTTTCTGGTCATCGTCTTTTTGGTGCGCGAAATGCGTGAAAG
CGCGGCAATCAGACGGCAGCAGGAGCAGCTTGGGCTGAAACTTGAAGTTA
CCGCCGAGCAGGCTCAGGCCGCTAGTCAAGCCAAGTCAGATTTTTTAGCC
ATGGTTAGCCATGAAATACGTACGCCATTAAACGGCGTCATTGGCATGAG
CGAGCTGCTACGCGAATCGGTTAGCCTCTCGCAGGTAGAGGACTATGCGC
GCACGATTCACGAAAGCGCGAATCAATTATTAGCAATGATCAATGAAATT
CTCGATTTCTCAAAAATTGAAGCGGGCCACTTAACCCTTGAAACCTCGCC
CACTGCATTAAAGCCACTGATCGATAGTGTGGTGGTGTTATTCGCTCCCA
GGGCGAAAATGAAGGGTCTCGCACTCACTGTTAACGTCGACACATTAGTG
CCTAATTGGGTTCTGGTAGATGAGGGGCGGCTTAGACAGATTTTACTTAA
CCTAATTGCCAATGCGATCAAGTTCACTGACCACGGTGAGATTAATGTGC
AGATCTTCTCGACGGTAGAGGAGCTTATATTTGAAGTTAGTGATACTGGC
TGTGGATTAAGCGAGCCACAGCAAGCGCGCCTCTTTGAGCCTTTTCATCA
GGTGGATGAGTCGGTCGCTAGGCGTTTTGGAGGCACCGGCTTAGGGCTGG
CGATTTGTAAGCGCCTATGCGATGCGATGCAAGGTCAGCAAAGCCTGCGA
GAAGATACTGCCTGGGTCGTCTACAAGTTAGACCGTGATACGGTTCAATT
ATTGAATCATTTACTGGTGGCTACTCACGAAACATTCGATCCCTTGAGGC
ACGACGAGTTAAATCTGCGCTTTGAATTGCTGTATAGCCGGATGACGCTG
CTCACTAATGGCGAAGTCAGGGCCCTATTACAAGATATTCCTTCTGCGCG
TGAGTTGCTGCAACAAATCCACCAGCAGCTTGATGTGCTTGATCCTATGT
TTGAGCCTTATGGTGTGCTTGAGCAGCTATCGGTCACAGAGCTTGATAGA
GAGCTACAGGCGCTAGCGATGCTTACTGAGCGTCTAGTGATTGCCATCAA
TGGTTATCTTGCAGAGTCTGCAACCGCAGAGCGTACCCAACTTAGCCAGC
TCTATAAGTTGCTCATGACACTCATCATCGGCATGAGCTTGGCGGCTTTT
CTGGTCATCGTCTTTTTGGTGCGCGAAATGCGTGAAAGCGCGGCAATCAG
ACGGCAGCAGGAGCAGCTTGGGCTGAAACTTGAAGTTACCGCCGAGCAGG
CTCAGGCCGCTAGTCAAGCCAAGTCAGATTTTTTAGCCATGGTTAGCCAT
GAAATACGTACGCCATTAAACGGCGTCATTGGCATGAGCGAGCTGCTACG
CGAATCGGTTAGCCTCTCGCAGGTAGAGGACTATGCGCGCACGATTCACG
AAAGCGCGAATCAATTATTAGCAATGATCAATGAAATTCTCGATTTCTCA
AAAATTGAAGCGGGCCACTTAACCCTTGAAACCTCGCCCACTGCATTAAA
GCCACTGATCGATAGTGTGGTGGTGTTATTCGCTCCCAGGGCGAAAATGA
AGGGTCTCGCACTCACTGTTAACGTCGACACATTAGTGCCTAATTGGGTT
CTGGTAGATGAGGGGCGGCTTAGACAGATTTTACTTAACCTAATTGCCAA
TGCGATCAAGTTCACTGACCACGGTGAGATTAATGTGCAGATCTTCTCGA
CGGTAGAGGAGCTTATATTTGAAGTTAGTGATACTGGCTGTGGATTAAGC
GAGCCACAGCAAGCGCGCCTCTTTGAGCCTTTTCATCAGGTGGATGAGTC
GGTCGCTAGGCGTTTTGGAGGCACCGGCTTAGGGCTGGCGATTTGTAAGC
GCCTATGCGATGCGATGCAAGGTCAG
back to top