mRNA_E-siliculosus-1a_F_contig140.2366.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig140.2366.1
Unique NamemRNA_E-siliculosus-1a_F_contig140.2366.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: A0A6H5JVA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA0_9PHAE)

HSP 1 Score: 416 bits (1068), Expect = 1.680e-142
Identity = 237/272 (87.13%), Postives = 245/272 (90.07%), Query Frame = 1 
Query:  268 MCLRAMEKYGGTAAATALGRTISKHXXXXXXXXXEQRSGNGTVSSTAPTAVMAPSATIPSXXXXXXXXXXXXXXXXXXXXXXXIVPDGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYGRVRDKEIATLKRQHSLDTEDASRHSLRVAASSEPL 1083
            MCLRAME+YGG AAATALGRT+S H         EQRSGNGTV+STAP+A MA       XXXXXXXXXXXXXXXXXXXXX  ++ DGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADT+KLGHMIFTQIYGLVYLAFSVVWFY GPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY RVRDKEIATLKR+HSL TE ASRHSLRVAASS PL
Sbjct:    1 MCLRAMERYGGNAAATALGRTLSMHELVRTLPMREQRSGNGTVNSTAPSAAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMVL-DGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTYKLGHMIFTQIYGLVYLAFSVVWFYNGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYRRVRDKEIATLKREHSLATEGASRHSLRVAASSVPL 271
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: D7FX10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX10_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 6.280e-105
Identity = 153/161 (95.03%), Postives = 157/161 (97.52%), Query Frame = 1 
Query:  517 IVPDGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYGRVRDKEI 999
            +VPDGN QPPVPRGLRWLQLVLWNIACIASLLVTFVWA+EDYVRQVRQG KNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSV+WFYKGPEDEKYLYEDTLDW ENRLQACLSGGVAVGVLVPIAGLLHL VFRLREALYGRVRDK+I
Sbjct:    1 MVPDGNAQPPVPRGLRWLQLVLWNIACIASLLVTFVWASEDYVRQVRQGTKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVIWFYKGPEDEKYLYEDTLDWGENRLQACLSGGVAVGVLVPIAGLLHLVVFRLREALYGRVRDKDI 161
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: A0A6H5JSI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI9_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.440e-44
Identity = 111/301 (36.88%), Postives = 155/301 (51.50%), Query Frame = 1 
Query:   79 GTSRFLSQEAFVGYKALLGVYFLFWAVYWPKFEGFSRQAIHQLTFWTWDVCTGYFLVSTATAFMCLRAMEKYGGTAAATALGRTISKHXXXXXXXXXEQRSGNGTVSSTAPTAVMAPSATIPSXXXXXXXXXXXXXXXXXXXXXXXIVPDGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVK--NFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY 975
            GTSRFL Q  FV YK  L VYFL+WA++W   + ++      LT WTW   T YF+VS  +AF+C R            A+  T++                +G V    P A  AP+++ PS                           G+ QP VP  LR LQL LW+ ACI SL+V  ++    Y      G K    D QAH  VA  ML+DQ L+AD FKL +++F Q +G++Y+ F+V W+Y  P+D++ +Y   LDW++N L AC+    A+ V  P+ GL+H G+FRLRE +Y
Sbjct:   19 GTSRFLPQGMFVLYKLGLAVYFLYWAIFWRAVKDYNTGRF--LTHWTWYATTTYFVVSALSAFLCWR------------AIAVTVA----------------SGPVRDGDP-AFDAPTSSRPSDRT------------------------GSPQP-VPAALRHLQLALWSTACIVSLIVVSIFWGALY-----DGDKLTTVDEQAHVFVACIMLLDQFLVADEFKLRYVLFPQAFGVIYIFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHFGIFRLRERVY 257
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: D7G734_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G734_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.370e-26
Identity = 61/145 (42.07%), Postives = 87/145 (60.00%), Query Frame = 1 
Query:  544 PVPRGLRWLQLVLWNIACIASLLV-TFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY 975
            PVP  LR LQLVLW+ ACI SL+V T  W                           +L+DQ L+AD FKL +++F Q +G++YL F+V W+Y  P+D++ +Y   LDW++N L AC+    A+ V  P+ GL+HLG+FRLRE++Y
Sbjct:   14 PVPAVLRHLQLVLWSTACIGSLIVVTIFWGA-------------------------LLLDQFLVADEFKLRYILFPQAFGVIYLFFNVGWYYLAPDDDRLIYI-ILDWEDNTLGACIYAFGAILVGAPLFGLVHLGLFRLRESVY 132
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: D7G736_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G736_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.300e-23
Identity = 80/308 (25.97%), Postives = 128/308 (41.56%), Query Frame = 1 
Query:   82 TSRFLSQEAFVGYKALLGVYFLFWAVYWPKFEGFSRQAIHQLTFWTWDVCTGYFLVSTATAFMCLRAMEKYGGTAAATALGRTISKHXXXXXXXXXEQRSGNGTVSSTAPTAVMAPSATIPSXXXXXXXXXXXXXXXXXXXXXXXIVPDGNVQPPVPRGLRWLQLVLWNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALYGRVRDKEIAT 1005
            TSRFL    FV +K L   YFL W   WP    ++   +   T+W W   T YF +S ATA    R                T ++            R G    + T   +  A    I                                  P+ + +  +QL  WN+AC+ SL V  ++ +  Y       + + D+ AH L+AF M+ DQ+L+A  F++  M   +++ + YL +S++W++     E+ L    LDWD +  +A       + VL+P   +LH  +FRLRE++Y   R +  A+
Sbjct:   17 TSRFLKPGPFVAFKGLFVAYFLIWCFLWPL--DYTSMYLFA-TYWVWYTGTAYFALSFATACAHFRRWS-----------AATQARAPDNGSAGGGSDRPGPSWSNLTGDVSTPALRTRI---------------------------------HPLEQAVLAIQLFTWNVACLGSLFVAIIYWSSLYTGTP---ITSVDMNAHTLIAFVMVADQMLVATPFRIRDMWKAEVFAITYLVYSLLWYFL----EQELIYVILDWDRHFWEAFSYSVAGIFVLIPATSVLHYYIFRLRESIYATCRQRAEAS 270
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: D7G735_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G735_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.220e-20
Identity = 59/154 (38.31%), Postives = 87/154 (56.49%), Query Frame = 1 
Query:  529 GNVQPPVP---RGLRWLQLVLWNIACIASL-LVTFVW-ATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY 975
            GN   P+    R L   Q+  WN+AC+ SL +VT  W A  D        + + DV AH L+A  M +DQLL+A  F+   M+ +  + +VY+AF++++F   PEDE+ +Y   +DW E+   +     V   VLVP+ GL+H  VFRLRE +Y
Sbjct:   18 GNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFD-----NTPLTSTDVNAHILIAPIMAIDQLLVATKFERKQMLASFSFSIVYVAFNIIFFLTAPEDERVIYGQ-MDWGESVGNSAAFAAVVAFVLVPLGGLIHYCVFRLREYIY 165
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: A0A6H5JMZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.140e-20
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:  529 GNVQPPVP---RGLRWLQLVLWNIACIASL-LVTFVW-ATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY 975
            GN   P+    R L   Q+  WN+AC+ SL +VT  W A  D        + + DV AH L+A  M +DQLL+A  F+   M+ + ++ +VY+AF++V+F   PEDE+ +Y   +DW E+   +     V   VLVP+ GL+H  VFRLRE +Y
Sbjct:  107 GNRNQPLSSNRRALLGFQVFSWNVACVGSLVIVTVFWVALFD-----NTPLTSTDVNAHILIAPVMAIDQLLVATKFERKQMLASFLFSIVYVAFNIVFFLTAPEDERVIYGQ-MDWGESVGNSAAFAAVVTFVLVPLGGLIHYCVFRLREYIY 254
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: UPI000A2A46E3 (protein rolling stone n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A46E3)

HSP 1 Score: 61.6 bits (148), Expect = 5.990e-7
Identity = 45/157 (28.66%), Postives = 80/157 (50.96%), Query Frame = 1 
Query:  526 DGNVQPPVPRGLRWLQLVL--------WNIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPEDEK---YLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLR 963
            DGN   P  +      L+L        +N+A   + LVT ++   DYV    Q V   +  AH + +  +++D ++    F++ H+I+  IYG+VY +F+V+++  G  + K   Y+Y   LD++ N   A L   + V + VPI+  L   ++R+R
Sbjct:  121 DGNPDKPDSKLRHPRMLILTCKASWAIYNVAANIAFLVTAMYWAFDYVPG--QYVDGSNANAHAVNSVLVIIDVMVCNVPFRIFHLIYPLIYGIVYTSFTVIYWAAGGTNHKGKSYIYA-ILDYENNAGLAFLMAAMFVFLAVPISQFLVYCLYRIR 274
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: A0A2B4SF33_STYPI (Protein rolling stone n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SF33_STYPI)

HSP 1 Score: 59.3 bits (142), Expect = 4.160e-6
Identity = 42/143 (29.37%), Postives = 73/143 (51.05%), Query Frame = 1 
Query:  565 WLQLVLW---NIACIASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKLGHMIFTQIYGLVYLAFSVVWFYKGPED---EKYLYEDTLDWDENRLQACLSGGVAVGVLVPIAGLLHLGVFRLREALY 975
            W   V W   +IA   + +VT V+ T  Y       V+  DV  H + + FML+D  L +   ++ H+++ ++YG+VY+ F+VV++  G  D   E ++Y   L++        L+  +     +P+A L + G+F LR  LY
Sbjct:  176 WYHKVSWLFYSIAANIAPVVTVVFWTFLYSGGA---VREIDVAFHAMNSVFMLIDTCLSSIPVRIFHVVYAELYGIVYIIFTVVYWQCGGTDINGEDHIYP-LLNYGHKPYTTALAINIIALAGLPLAQLWNFGIFSLRCYLY 314
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Match: D7G733_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G733_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.150e-6
Identity = 47/196 (23.98%), Postives = 71/196 (36.22%), Query Frame = 1 
Query:   49 GAVREHDLGFGTSRFLSQEAFVGYKALLGVYFLFWAVYWPKFEGFSRQAIHQLTFWTWDVCTGYFLVSTATAFMCLRAMEKYGGTAAATALGRTISKHXXXXXXXXXEQRSGNGTVSSTAPTAVMAPSATIPSXXXXXXXXXXXXXXXXXXXXXXXIVPDGNVQPPVPRGLRWLQLVLWNIACIASLLVTFV-WAT 633
            G  R+  L  GTSRFL Q  FVG+KA++ +Y + WA +W + E    +    L  WT  + T YF++S  ++ +C+  + +                                      AP     P    P                               + PVP   RWLQ + W + CI+S++V  V W T
Sbjct:   27 GGTRQQGLRAGTSRFLQQGWFVGWKAVMTIYCIVWAAWWDRGEDLDIRI--YLATWTHMLATAYFVISLISSLLCMAYLSR-----------------------------------EKPAPVEEGKPKRPPPVK---------------------------GTRSPVPCYFRWLQHISWVLTCISSMVVLSVFWMT 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig140.2366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JVA0_9PHAE1.680e-14287.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX10_ECTSI6.280e-10595.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSI9_9PHAE1.440e-4436.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G734_ECTSI1.370e-2642.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G736_ECTSI1.300e-2325.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G735_ECTSI2.220e-2038.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMZ5_9PHAE4.140e-2038.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000A2A46E35.990e-728.66protein rolling stone n=1 Tax=Exaiptasia diaphana ... [more]
A0A2B4SF33_STYPI4.160e-629.37Protein rolling stone n=1 Tax=Stylophora pistillat... [more]
D7G733_ECTSI9.150e-623.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig140contigE-siliculosus-1a_F_contig140:20143..25681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1086
Model size1244
Exons6
Ec32 orthologEc-10_003880.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBilateria
COG Functional cat.S
EggNOG OGs2BZ8C@1,2S8CX@2759,3A92Y@33154,3BTZA@33208,3DATV@33213
EggNOG free text desc.Protein rolling stone-like
GOsGO:0000768,GO:0005575,GO:0006949,GO:0007520,GO:0008150,GO:0009653,GO:0009987,GO:0014902,GO:0016020,GO:0030154,GO:0032502,GO:0042692,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0061061
Seed eggNOG ortholog10224.XP_002731894.1
Seed ortholog evalue6e-08
Seed ortholog score65.5
Taxonomic scopeMetazoa
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.8885422-UTR-E-siliculosus-1a_F_contig140:20142..203001622927913.8885422-UTR-E-siliculosus-1a_F_contig140:20142..20300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 20143..20300 -
1696318735.1916215-UTR-E-siliculosus-1a_F_contig140:20142..203001696318735.1916215-UTR-E-siliculosus-1a_F_contig140:20142..20300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 20143..20300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.900101-CDS-E-siliculosus-1a_F_contig140:20300..204301622927913.900101-CDS-E-siliculosus-1a_F_contig140:20300..20430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 20301..20430 -
1696318735.2044692-CDS-E-siliculosus-1a_F_contig140:20300..204301696318735.2044692-CDS-E-siliculosus-1a_F_contig140:20300..20430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 20301..20430 -
1622927913.9116063-CDS-E-siliculosus-1a_F_contig140:21077..212621622927913.9116063-CDS-E-siliculosus-1a_F_contig140:21077..21262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 21078..21262 -
1696318735.2144399-CDS-E-siliculosus-1a_F_contig140:21077..212621696318735.2144399-CDS-E-siliculosus-1a_F_contig140:21077..21262Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 21078..21262 -
1622927913.9261007-CDS-E-siliculosus-1a_F_contig140:22054..221141622927913.9261007-CDS-E-siliculosus-1a_F_contig140:22054..22114Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 22055..22114 -
1696318735.2272182-CDS-E-siliculosus-1a_F_contig140:22054..221141696318735.2272182-CDS-E-siliculosus-1a_F_contig140:22054..22114Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 22055..22114 -
1622927913.9421625-CDS-E-siliculosus-1a_F_contig140:23350..234221622927913.9421625-CDS-E-siliculosus-1a_F_contig140:23350..23422Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 23351..23422 -
1696318735.238091-CDS-E-siliculosus-1a_F_contig140:23350..234221696318735.238091-CDS-E-siliculosus-1a_F_contig140:23350..23422Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 23351..23422 -
1622927913.961878-CDS-E-siliculosus-1a_F_contig140:23945..243461622927913.961878-CDS-E-siliculosus-1a_F_contig140:23945..24346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 23946..24346 -
1696318735.247441-CDS-E-siliculosus-1a_F_contig140:23945..243461696318735.247441-CDS-E-siliculosus-1a_F_contig140:23945..24346Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 23946..24346 -
1622927913.9756324-CDS-E-siliculosus-1a_F_contig140:25443..256811622927913.9756324-CDS-E-siliculosus-1a_F_contig140:25443..25681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 25444..25681 -
1696318735.259794-CDS-E-siliculosus-1a_F_contig140:25443..256811696318735.259794-CDS-E-siliculosus-1a_F_contig140:25443..25681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 25444..25681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig140.2366.1prot_E-siliculosus-1a_F_contig140.2366.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig140 20301..25681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig140.2366.1

>prot_E-siliculosus-1a_F_contig140.2366.1 ID=prot_E-siliculosus-1a_F_contig140.2366.1|Name=mRNA_E-siliculosus-1a_F_contig140.2366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=362bp
MGTFGISSQPRTCYGAGAVREHDLGFGTSRFLSQEAFVGYKALLGVYFLF
WAVYWPKFEGFSRQAIHQLTFWTWDVCTGYFLVSTATAFMCLRAMEKYGG
TAAATALGRTISKHEVGRTLSMHEQRSGNGTVSSTAPTAVMAPSATIPSA
MTSAAAAAAAAAASGTAAAAGGIVPDGNVQPPVPRGLRWLQLVLWNIACI
ASLLVTFVWATEDYVRQVRQGVKNFDVQAHGLVAFFMLVDQLLIADTFKL
GHMIFTQIYGLVYLAFSVVWFYKGPEDEKYLYEDTLDWDENRLQACLSGG
VAVGVLVPIAGLLHLGVFRLREALYGRVRDKEIATLKRQHSLDTEDASRH
SLRVAASSEPL*
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mRNA from alignment at E-siliculosus-1a_F_contig140:20143..25681-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig140.2366.1 ID=mRNA_E-siliculosus-1a_F_contig140.2366.1|Name=mRNA_E-siliculosus-1a_F_contig140.2366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:20143..25681- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAACCTTCGGCATTTCTTCGCAGCCGCGCACATGCTACGGAGCTGG
TGCCGTCAGGGAGCATGATCTAGGCTTCGGTACATCGAGATTTCTGTCCC
AGGAAGCATTTGTTGGCTACAAGGCTTTACTGGGCGTCTACTTCCTTTTC
TGGGCGGTGTACTGGCCGAAGTTCGAGGGATTCTCTCGGCAGGCCATACA
TCAGCTGACCTTTTGGACGTGGGATGTCTGCACAGGATGTGGGTCCACTT
CTTACAGATCGCTTGGCAAACTGTTTGCACGAGCGTTGGCAGGGTTTGCG
CTTCATGGTGTAGAGGAAACTCAACTTGGATTACCACTGTAGATTATGTA
CAGCAGAATCTACAGGTAAGTATTTTCAACATACGTGTTTCCTTGTTCGC
ACGGTAGAGATAAAGAGTGCACCAAATAACAGCACCAAGTATTCTCACGG
TGTGTTTTCACAGAAATACGAAGAGAAAAAGGGAGACCACCGTCAGATAC
AGTTTGTGGTACCTTGGGGGACCTTGAATCACCTTGTCGTCACATTGAAG
TTTTCTCCTGGTACTCGAGGGGAAAAAAACATATAAAATAGATAGCTAAA
CATCCAACCAGTTGACCGGTGTTTCTTTTTTCTCGTGGAGGGAAGGAACA
TTGTTGTTCCTGTTTGCTTCCGCTCGTTTCTGGCGAGAACTCTGCTTCCT
ATGGGGTACTCCGCAATAGTTGGTTCTCTATCTATGTATACTATGTTGTT
CTTGGACTGCGCGGGAGGGGTGGTGCTCGCAAAAATATCCCCCTGAACTC
AGCAACGGGGGGGGGAAAGGCTTAGAGAAAGAGAGTACGGCCAGCGCGGA
TGCCCACTCACCCGATCCACCATGCAGCAGCCATGGCGGTGGATCTCTCT
CATAGAGCCGACGATGCCAGGTCCTTGTTGACTGCACATTGCAAAAAAAC
AGTTGTACGTATTTCGGTTGTGGAGCCGGGGCACCCCCGAAGGTATCCAG
ATGGAGGGGGGGGGTTCTCGTATGCAGTCGATTTACATTTCCAAATAGTA
GAGCGAAAGGCCGGAGGTGGGGTTTCAGCTTTTCGAAATCCCTCGTCCCC
CTTCAAAGAAACAACCGAAACGACCAAACGTACATCACCGAGCAGGGAGC
CCCGCAGTGCTGTCCGCGCACATCGGGGGCAGGAGATAAACGGGTGGGGT
AACCTCGACAGCGACCACGATATAAGGGCCGTCCGATTTGCCCTCTGACC
TAAAGACCCCAATGCTGCATCCAACCTCCCATTCCCAGTCAGTCCCGTCT
CATCTCGGTGAACCCTACGTCCCGCGCTCTTCCAGACTTCCTTGTTTCCA
CCGCCACGGCATTCATGTGCTTGAGAGCCATGGAGAAATACGGAGGAACC
GCGGCGGCGACGGCGCTAGGAAGAACTATCTCCAAGCACGAGGTAGGACG
AACCCTCTCCATGCACGAGCAGCGAAGCGGCAACGGCACCGTCAGCTCCA
CAGCACCAACTGCTGTGATGGCACCGTCGGCAACAATACCGTCCGCGATG
ACATCAGCGGCGGCGGCGGCGGCGGCAGCGGCGGCATCAGGAACGGCCGC
GGCGGCAGGAGGGATAGTGCCGGATGGGAACGTCCAGCCCCCGGTACCGC
GGGGGTTGAGATGGCTCCAGCTCGTGCTGTGGAATATCGCGTGCATAGCC
TCCCTGCTCGTCACGTTTGTCTGGGCTACGGAAGACGTGAGCGTGGGTTT
TGGAAACGAGCATGGCATCTACTGTAACAACGTGCCATATCGATGTAGGT
TTGGCCTTTGGCGCAGATGTGTAAACGTCGACAGTAGCATGCTGTACCCC
CCTGTCGAACTTTGGAGCATTGTCGTCCACCCGCCTTGTGGCCAACCCAC
CGCCACTCTGAGGGCCACCACCGGTAGCTGATTACTCAGGACGAACCCCA
GCGTGTTTCGCGGGCACCCACAAGAGGGGTAGTACTTACGCCGAGAGCAG
ACCTTGTGCTCTTTTCCCTGGGAGTGGAATGGATGCCGCAAGCAACCGTG
GTTAATCGAACAACATCGTTTTTGTCCTGACAATCGGTTGTACAAGGAAC
GTGTGCGCTTTCCTGCCTTCGTCTTTCCAGGCCGGAAACCTACCGGAAAA
AAATGCTTTCCTTTTCTGATGCGGCGTCCTTCCCATCCATCGCACGCGCC
CACCTTCTCTTTCACGCGGCGTTCATCACGACGCTCACGGACGTGGTCGA
TATCTACAGTACGTCCGACAGGTTCGGCAGGGCGTCAAGAACTTCGACGT
TCAGGCTCACGGCCTGGTAGCGTTCTTCATGGTGAGAATAATTAAGCTTT
CGGGTTCCCTTTTCCCCCGAATATTGGTGCCCGTGGCATTTCTTCTCCCG
GGGCTGCTGTGGTTTCAAGCGAGAAAATAGGGCCATAACTGCGCGAGCGA
TCGCACCCCCCCCCCCCCCCTCTAGATCGAGTTTTATAGCTCGATTCCTC
TACAACCAAGAGGGTGCGAGAATCGGCCGATACCTCTTCCAAGGAAAGCT
CTCGACTAGATCTCTAAAATTCCCCACAATTTTCGGCCTCAACGTGGTGC
CCTCTCGATTGCAGACCACTCGAGCTATGAAACCGGTCTCTCCGGGGGGG
GGGGGGTGTACTCATAGTCGGGCATGCCGTAGTCGTTAGACCATTGACCT
CGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAG
GCTCTCACAAAGCGCCTTGAGGTATTCGGCGAGTCGCATGAAGGGTGAGC
TGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTACG
GACGACAGCTGCGTATGACTTAATTTATTTTCTGGTGCTTTCACTTCCTG
AGACAGTTGTAAGCACTGTGTAACTGTCTCGAGGATGCTTGACCATTTTA
ACACAACGTGGTGCGATCATCCCCCTTGCGCGGAGTGAGGGTTCTCCACT
CCGCACAACATGATCTACTCAACCACCATTGTGGTTACCGCCAAAAAAAA
AAACAGAGGTAATAAAACAAAACGGTAACCTGGTTGCCGAGTTCACGAAG
TGAATTGGCTTGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCC
CGATGGCAAACACCGGGGGGGGGGGGATACTCATAGTCGTGTATGCCGTA
GTGGTTAGACCATTGACCTCGCGTCCCTCCGCGCTAGCACACCGCTTGCA
TGGTTTCGTGGGTGTACTCGGAGGTGTGCCGCGCAGGCAACTCTGTGAGG
AGATACGGTTGGCGTGGGCGGGGTCATCGTGAATGTATGGTGTGTGCCGT
GCGCGCTTCTGCACTTGTGTGTACGTCTCCATCAGGGTTCAGGGTTCCGT
TCTAGTGGGAGCGGTTTCTTGAGCTTGTGCATGTGGACGTGCGCCTGTGG
TAATTGATCGAAAATATCATGATGCGCGCTATAAAACTCGTTTGTCTGAC
AGTCGTCACCCTCGTTTCCGTCCGTCGTTTGTCTTCTTGTTCGTCTTCCA
ACGATGATGAAATCCAGCTGGTGGATCAGCTGCTCATAGCGGACACGTTC
AAGCTGGGGCACATGATCTTCACCCAGGTGAGAAAACACAGTACCACCTT
GAACAAACTCGACCGAAACTACCGGGGAGAAACGGTTGTAACTGTCATGA
TTGGCTAGTCCCACCTCGCAAATCAGGGAATACCATGGTTCTCCTAGAAC
CCCCCCCCCAACAACAAACCGAAGAGAGTGTACCGGGCGCGAGCTTTCTA
TTTTTCAAATGGCGGGGGAGGAACGCAGATAACCCCGTCAAGCATCTACA
GCTTCTCCGTGGGGCATGTCGTCTCGTTTGACTGTGCCTCACCGCTGGAT
AATACAAACGTACAAACCGATGCGAAGGTCAAGACTTTTTGCCAGTCGAA
AGATGTTTCGTTCTCATCTGTGTCTCGCAGAGGTTCTTGCTCCTACGAGC
CTGATGTAGAGACCTCGGGTTGTGATAACTCATCCGTGGAAAACTGTATT
TGTTGTCAATGTTCCGTGGGGGGTGCTACTTGAGTTTTCGAAGCCCCCCA
CGGAAGTCTTCCTCTCCTCGGCAGAAATCCTGCAATATTTTCGAGAAGAT
TTCCCCCTGGCGTGCGTGCCAAATGCTTGATTGGACTGTGGAGGGGTTCC
CTCTTGTGACAACCCAGTTCCCGCCGGTGTACTCAGTATTTGCCTGCGGT
GACCCCTCGTCCAAGCGATCCTATCCACACTCGACCCGTACACTCCCGTA
GGCCTCTCGTTGGTCTAGTTCGCTTTCCTTTGCTCAATGCGGCAGAACTT
CGGTCACGCTCTTAACCAATCGGACTCACCCCGCCGCCGCGCCTCCGCGC
CTGCGCCTCTCTCGCCCAGATCTACGGGCTGGTATACCTAGCCTTTTCTG
TTGTTTGGTTCTACAAAGGCCCAGAAGACGAGAAGTATCTCTACGAGGAC
ACACTCGATTGGGACGAGAACAGGCTGCAGGCCTGCCTGTCGGGAGGGGT
CGCCGTAGGGGTCCTCGTGCCGATCGCCGGACTGCTGCACCTGGGGGTGT
TCAGGTGTGAGACCATCTGCTGCTGTCACTGCGTGTAGGAGAAGGGGGTG
TGTGTCCGGTTGTTCTTTTTTTTCGGTCCGCGTTCAGACATGTGTGTTGC
AGGCGCTGCTGTTATCGCGTAGGTGTCTGATTTTTTTTTGCCACTCTCCG
TCCAGACATACATGCCGCAGGTGGACATCTCGCGTTGGGTGTGCTTACCT
GCCGTTGCGAAGGATATTAATCTTTCCGTGCGCCGCGTCCCCTTGTGCGT
ATATGCAAGCCAAGCATCATTGATGCATGTTACTCGGGATACTTCCGACA
GTTTCGAGAACGCCGCCTTCCACTACGAAAATGAAACCAGCGTCAGAGGA
AACAGGTGGTGCTTTTAGCAAGCGAACTCGGTCGCCCGCCTCTCTCTTTA
TCTGTCCCTCTCTTTGTGCCGGGGGCGTGAGAATCGTAAACCAGGCCGGT
ACCTGCTGTCGAAGCGAACCCACGTATCAAAGAAGCATGTCACCTTTCCT
TCGTGCATGACGTGCGTGTCCCTCTTGCCGCTCGCATTGATTCATCGGTC
ATCGAACTTGCCTCTAACGGCGACATCCGCGTCCGTTCGGTTATACACGT
CCATTGATGCACCGCCGATGGAAAAACCCGTGCCTCGTACAACACGCGCA
GGCTGCGGGAAGCACTCTACGGTAGGGTTCGAGACAAGGAGATTGCTACC
CTGAAACGACAGCATTCGTTAGACACGGAGGACGCTTCTCGCCATTCGCT
ACGGGTAGCTGCAAGCAGCGAACCGCTCTGAGTAAAGGGTCCCCTGCATG
TTTTCTACATACACGTACAATGCGGTTTTGTTGACGGTGCAATGGATTGG
GTTTTGGTTCGGGGAGACCGTCATGGCGATGCGGTTGACCGGACGAGGAT
AGACTTCGGCTGCAGGTATCTCTGGCAGGTGTACGAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig140:20143..25681-

>mRNA_E-siliculosus-1a_F_contig140.2366.1 ID=mRNA_E-siliculosus-1a_F_contig140.2366.1|Name=mRNA_E-siliculosus-1a_F_contig140.2366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2172bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:20143..25681- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAACCTTCGGCATTTCTTCGCAGCCGCGCACATGCTACGGAGCTGG
TGCCGTCAGGGAGCATGATCTAGGCTTCGGTACATCGAGATTTCTGTCCC
AGGAAGCATTTGTTGGCTACAAGGCTTTACTGGGCGTCTACTTCCTTTTC
TGGGCGGTGTACTGGCCGAAGTTCGAGGGATTCTCTCGGCAGGCCATACA
TCAGCTGACCTTTTGGACGTGGGATGTCTGCACAGGATATGGGAACCTTC
GGCATTTCTTCGCAGCCGCGCACATGCTACGGAGCTGGTGCCGTCAGGGA
GCATGATCTAGGCTTCGGTACATCGAGATTTCTGTCCCAGGAAGCATTTG
TTGGCTACAAGGCTTTACTGGGCGTCTACTTCCTTTTCTGGGCGGTGTAC
TGGCCGAAGTTCGAGGGATTCTCTCGGCAGGCCATACATCAGCTGACCTT
TTGGACGTGGGATGTCTGCACAGGATACTTCCTTGTTTCCACCGCCACGG
CATTCATGTGCTTGAGAGCCATGGAGAAATACGGAGGAACCGCGGCGGCG
ACGGCGCTAGGAAGAACTATCTCCAAGCACGAGGTAGGACGAACCCTCTC
CATGCACGAGCAGCGAAGCGGCAACGGCACCGTCAGCTCCACAGCACCAA
CTGCTGTGATGGCACCGTCGGCAACAATACCGTCCGCGATGACATCAGCG
GCGGCGGCGGCGGCGGCAGCGGCGGCATCAGGAACGGCCGCGGCGGCAGG
AGGGATAGTGCCGGATGGGAACGTCCAGCCCCCGGTACCGCGGGGGTTGA
GATGGCTCCAGCTCGTGCTGTGGAATATCGCGTGCATAGCCTCCCTGCTC
GTCACGTTTGTCTGGGCTACGGAAGACACTTCCTTGTTTCCACCGCCACG
GCATTCATGTGCTTGAGAGCCATGGAGAAATACGGAGGAACCGCGGCGGC
GACGGCGCTAGGAAGAACTATCTCCAAGCACGAGGTAGGACGAACCCTCT
CCATGCACGAGCAGCGAAGCGGCAACGGCACCGTCAGCTCCACAGCACCA
ACTGCTGTGATGGCACCGTCGGCAACAATACCGTCCGCGATGACATCAGC
GGCGGCGGCGGCGGCGGCAGCGGCGGCATCAGGAACGGCCGCGGCGGCAG
GAGGGATAGTGCCGGATGGGAACGTCCAGCCCCCGGTACCGCGGGGGTTG
AGATGGCTCCAGCTCGTGCTGTGGAATATCGCGTGCATAGCCTCCCTGCT
CGTCACGTTTGTCTGGGCTACGGAAGACTACGTCCGACAGGTTCGGCAGG
GCGTCAAGAACTTCGACGTTCAGGCTCACGGCCTGGTAGCGTTCTTCATG
TACGTCCGACAGGTTCGGCAGGGCGTCAAGAACTTCGACGTTCAGGCTCA
CGGCCTGGTAGCGTTCTTCATGCTGGTGGATCAGCTGCTCATAGCGGACA
CGTTCAAGCTGGGGCACATGATCTTCACCCAGCTGGTGGATCAGCTGCTC
ATAGCGGACACGTTCAAGCTGGGGCACATGATCTTCACCCAGATCTACGG
GCTGGTATACCTAGCCTTTTCTGTTGTTTGGTTCTACAAAGGCCCAGAAG
ACGAGAAGTATCTCTACGAGGACACACTCGATTGGGACGAGAACAGGCTG
CAGGCCTGCCTGTCGGGAGGGGTCGCCGTAGGGGTCCTCGTGCCGATCGC
CGGACTGCTGCACCTGGGGGTGTTCAGATCTACGGGCTGGTATACCTAGC
CTTTTCTGTTGTTTGGTTCTACAAAGGCCCAGAAGACGAGAAGTATCTCT
ACGAGGACACACTCGATTGGGACGAGAACAGGCTGCAGGCCTGCCTGTCG
GGAGGGGTCGCCGTAGGGGTCCTCGTGCCGATCGCCGGACTGCTGCACCT
GGGGGTGTTCAGGCTGCGGGAAGCACTCTACGGTAGGGTTCGAGACAAGG
AGATTGCTACCCTGAAACGACAGCATTCGTTAGACACGGAGGACGCTTCT
CGCCATTCGCTACGGGTAGCTGCAAGCAGCGAACCGCTCTGAGCTGCGGG
AAGCACTCTACGGTAGGGTTCGAGACAAGGAGATTGCTACCCTGAAACGA
CAGCATTCGTTAGACACGGAGGACGCTTCTCGCCATTCGCTACGGGTAGC
TGCAAGCAGCGAACCGCTCTGA
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