mRNA_E-siliculosus-1a_F_contig140.2365.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig140.2365.1 vs. uniprot
Match: D7FX11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX11_ECTSI) HSP 1 Score: 625 bits (1613), Expect = 3.160e-224 Identity = 354/384 (92.19%), Postives = 363/384 (94.53%), Query Frame = 1
Query: 1 MSKAAFSTTMLPRAYGRWSSPQSGGISAGCATCKNSSTALLFNPSGWWRNKADPALEEVKLPPRSPAALRLQTPHGRTLHPRRRRAAKRPNKDNSPLTDALDGEERRSRQRRRRGIVGNTVKSSGEYVTVRVRRSIDVEVPRGYPVSEKTWTELKAGCSVTFNKKIRAVVLPSKEEIYPTATLWASCFYSSNDYKMHRFDISGKGGGKAEWVALLEETRQVAAEGRKENXXXXXXXXXXXXXXXXXXXXXPNESAEAARGAGDCLDQPETKKLEQGEAGGGGXXXXXXXXXXSDCAGQKEIRSPVEAEASPHHPVGAPQEKGXXXXXXXXXDAKGGRKLTGIIINSLKKWFRELIPHGLNGGGGVNVHIDWVEAPLAGGKKCML 1152
MSKAAFSTTMLPR YGRWSSPQSGGISAGCATCK+SSTALLFN SGWWRNKADPALEEVKLPPRSP ALRLQTP GR+LHPRRRRAAKRPNK+NSPLTDALDGEERRSRQRRRRGIVGN VKSSGEYVTVRVRR+I+VEVPRGYPVSEKTWTE KAGCSVTFNKKIRAV+LPSKEEIYPTA LWASCFYSSNDYKMHRFDISGKGGGKAEWVALLEETRQVAAEGRKENXXXXXXXXXXXXXXXXX PNESAEAARG+GDCLDQPETKKLEQGEAGGG XXXXXXXXXX DCAGQKE RSPVEAEASPHHP GAPQEKGXXXXX DAKGGRKLTGIIINSLKKWFREL+PHGL+G GGVNVHIDWVE PLAGGKKCML
Sbjct: 1 MSKAAFSTTMLPRGYGRWSSPQSGGISAGCATCKHSSTALLFNRSGWWRNKADPALEEVKLPPRSPTALRLQTPDGRSLHPRRRRAAKRPNKNNSPLTDALDGEERRSRQRRRRGIVGNAVKSSGEYVTVRVRRTIEVEVPRGYPVSEKTWTEFKAGCSVTFNKKIRAVLLPSKEEIYPTAALWASCFYSSNDYKMHRFDISGKGGGKAEWVALLEETRQVAAEGRKENXXXXXXXXXXXXXXXXX----PNESAEAARGSGDCLDQPETKKLEQGEAGGGXXXXXXXXXXXXDCAGQKEKRSPVEAEASPHHPFGAPQEKGXXXXX----DAKGGRKLTGIIINSLKKWFRELMPHGLHGRGGVNVHIDWVEVPLAGGKKCML 376
BLAST of mRNA_E-siliculosus-1a_F_contig140.2365.1 vs. uniprot
Match: A0A6H5JQK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQK4_9PHAE) HSP 1 Score: 196 bits (497), Expect = 2.190e-58 Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 1
Query: 154 ADPALEEVKLPPRSPAALRLQTPHGRTLHPRRRRAAKRPNKDNSPLTDALDGEERRSRQRRRRGIVGNTVKSSGEYVTVRVRRSIDVEVPRGYPVSEKTWTELKAGCSVTFNKKIR 501
+DPAL+EVKLPPRSPAALRLQTP GRTLHPRRRR+AKRPN+ NSPLT+ALDGEERRSRQRRRRGIVGN VKSSGE+VTVRVRRSIDVEV R YPVSEK WTE KAGCSVT+++KIR
Sbjct: 29 SDPALQEVKLPPRSPAALRLQTPDGRTLHPRRRRSAKRPNESNSPLTNALDGEERRSRQRRRRGIVGNAVKSSGEHVTVRVRRSIDVEVRRDYPVSEKAWTEFKAGCSVTYDQKIR 144
BLAST of mRNA_E-siliculosus-1a_F_contig140.2365.1 vs. uniprot
Match: A0A6H5JV59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV59_9PHAE) HSP 1 Score: 192 bits (488), Expect = 3.030e-56 Identity = 140/204 (68.63%), Postives = 148/204 (72.55%), Query Frame = 1
Query: 499 RAVVLPSKEEIYPTATLWASCFYSSNDYKMHRFDISGKGGGKAEWVALLEETRQVAAEGRKENXXXXXXXXXXXXXXXXXXXXXPNESAEAARGAGDCLDQPETKKLEQGEAGGGGXXXXXXXXXXSDCAGQKEIRSPVEAEASPHHPVGAPQEKGXXXXXXXXXDAKGGRKLTGIIINSLKKWFRELIPHGLNGGGGVNVHID 1110
+AV+ PSKEEIYPTA LWASCFYSSND KMHR K XXXXXXXXXXXXXXXXXXXXXPNES +AARGAGDCLDQP+ KKLEQGEAGG G SDCAGQ E RSPVEAEASPHHP+ A QE XXXXXXXXDAKG RKL GIII+SLKKWFREL+PHGL+ GGGVNVHID
Sbjct: 14 QAVLFPSKEEIYPTAALWASCFYSSNDCKMHR---------KENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNESPKAARGAGDCLDQPDIKKLEQGEAGGEGEEGGAASHGISDCAGQTEKRSPVEAEASPHHPIVARQEX--XXXXXXXXDAKGDRKLAGIIISSLKKWFRELVPHGLHRGGGVNVHID 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig140.2365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig140.2365.1 >prot_E-siliculosus-1a_F_contig140.2365.1 ID=prot_E-siliculosus-1a_F_contig140.2365.1|Name=mRNA_E-siliculosus-1a_F_contig140.2365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=385bp MSKAAFSTTMLPRAYGRWSSPQSGGISAGCATCKNSSTALLFNPSGWWRNback to top mRNA from alignment at E-siliculosus-1a_F_contig140:15391..18653- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig140.2365.1 ID=mRNA_E-siliculosus-1a_F_contig140.2365.1|Name=mRNA_E-siliculosus-1a_F_contig140.2365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3263bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:15391..18653- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig140:15391..18653- >mRNA_E-siliculosus-1a_F_contig140.2365.1 ID=mRNA_E-siliculosus-1a_F_contig140.2365.1|Name=mRNA_E-siliculosus-1a_F_contig140.2365.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2310bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:15391..18653- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |