mRNA_E-siliculosus-1a_F_contig140.2364.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig140.2364.1
Unique NamemRNA_E-siliculosus-1a_F_contig140.2364.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: D7FX12_ECTSI (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX12_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 2.160e-82
Identity = 142/146 (97.26%), Postives = 144/146 (98.63%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAG GKAPVIDVTDNGYFKVLGKGKLP VPIIVRAK+FSKLAE+KIKAAGGACLLSA
Sbjct:    2 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGGGKAPVIDVTDNGYFKVLGKGKLPAVPIIVRAKIFSKLAEQKIKAAGGACLLSA 147
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A7S2WUG5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUG5_9STRA)

HSP 1 Score: 215 bits (548), Expect = 8.560e-66
Identity = 105/148 (70.95%), Postives = 123/148 (83.11%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKA--GDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            P+RFSK RK RG VS+GHGR+GKHRKHPGGRGNAGGQHHHRILFDK+             H+LRNREHCPI+NLDKLWS+ PEGT +QAKA  G G+AP+IDVT +GYFKVLG+G LP VP+IV+AK F+KLAE+KIKAAGGACL++A
Sbjct:    2 PTRFSKTRKLRGEVSSGHGRVGKHRKHPGGRGNAGGQHHHRILFDKYHPGYFGKVGMRRFHLLRNREHCPILNLDKLWSLAPEGTFDQAKAAAGTGQAPLIDVTKSGYFKVLGRGDLPDVPVIVKAKFFTKLAEKKIKAAGGACLITA 149
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A836CNF5_9STRA (Ribosomal protein L18e/L15P n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNF5_9STRA)

HSP 1 Score: 211 bits (537), Expect = 3.710e-64
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGD-GKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            PSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL D  XXXXXXXXXXXXX +LRNR+HCP+VN+DKLWS+LPEG    AK GD GKAPVIDV D+G+FKVLGKG+LP++P+IVRAK FSK AE+KI+AAGGAC+L A
Sbjct:    2 PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDXXXXXXXXXXXXXXXXLLRNRDHCPVVNVDKLWSLLPEGADADAKGGDAGKAPVIDVVDHGFFKVLGKGQLPSIPVIVRAKFFSKDAEKKIRAAGGACVLRA 148
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A7S2AU89_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AU89_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.600e-63
Identity = 119/148 (80.41%), Postives = 130/148 (87.84%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAK--AGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            PSRFSKNRKKRG VS+GHGR+GKHR HPGGRGNAGGQHHHRILFDK+XXXXXXXXXXXXX VL+NR H PIVNL+KLWS+ PE   E AK  AG GKAPVIDVT  GYFKVLGKG LP VP+IV+AK F+KLAE+KIKAAGGACLL+A
Sbjct:    2 PSRFSKNRKKRGEVSSGHGRVGKHRNHPGGRGNAGGQHHHRILFDKYXXXXXXXXXXXXXXVLKNRYHAPIVNLEKLWSLAPEEVFESAKKAAGSGKAPVIDVTKCGYFKVLGKGDLPNVPVIVKAKFFTKLAEKKIKAAGGACLLTA 149
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A6V1V341_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V341_HETAK)

HSP 1 Score: 207 bits (527), Expect = 1.630e-62
Identity = 118/146 (80.82%), Postives = 129/146 (88.36%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            PSR SKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL D  XXXXXXXXXXXXX +L+NREHCP VN+DKLWS+LPEGT E+AK GD KAPV+D    GYFKVLGKGKLP +P+IV+AK FS  AE+KIKAAGGACLL+A
Sbjct:   14 PSRLSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDXXXXXXXXXXXXXXXXLLKNREHCPTVNIDKLWSLLPEGTYEKAKDGD-KAPVLDCVKAGYFKVLGKGKLPDIPLIVKAKFFSLEAEKKIKAAGGACLLTA 158
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A7S1U1J2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1J2_9STRA)

HSP 1 Score: 205 bits (521), Expect = 9.030e-62
Identity = 109/146 (74.66%), Postives = 122/146 (83.56%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            P+R  KNRKKRGHVSAGHGRIGKHR HPGGRGNAGGQHHHRILFDK+XXXXXXXXX    H ++NRE CP VN+DK+W MLPEGT+E  K   GKAPV+D+   G FKVLGKG+LP  PIIV+AK FSK AE+KIKAAGGACLL+A
Sbjct:    2 PTRLHKNRKKRGHVSAGHGRIGKHRSHPGGRGNAGGQHHHRILFDKYXXXXXXXXXMRQFHKMKNREFCPTVNVDKIWGMLPEGTLEATKTAGGKAPVLDLVKLGVFKVLGKGRLPEAPIIVKAKYFSKEAEKKIKAAGGACLLTA 147
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: M4BUV9_HYAAE (Ribosomal_L18e/L15P domain-containing protein n=24 Tax=Oomycota TaxID=4762 RepID=M4BUV9_HYAAE)

HSP 1 Score: 204 bits (520), Expect = 1.320e-61
Identity = 118/147 (80.27%), Postives = 130/147 (88.44%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQA-KAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL D  XXXXXXXXXXXXX +LRNR HCP VN+++LW+++ E T EQA KA DGKAPVIDVT  GYFKVLGKG+LP VP+IV+AK FS  AE+KIKAAGGACLL+A
Sbjct:    2 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDXXXXXXXXXXXXXXXXLLRNRTHCPTVNVERLWTLVSEKTKEQAEKAKDGKAPVIDVTKAGYFKVLGKGRLPAVPLIVKAKFFSAEAEKKIKAAGGACLLTA 148
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A7S1TZC0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZC0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.460e-61
Identity = 110/147 (74.83%), Postives = 123/147 (83.67%), Query Frame = 1 
Query:    1 QPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            QP+R  KNRKKRGHVSAGHGRIGKHR HPGGRGNAGGQHHHRILFDK+XXXXXXXXX    H ++NRE CP VN+DK+W MLPEGT+E  K   GKAPV+D+   G FKVLGKG+LP  PIIV+AK FSK AE+KIKAAGGACLL+A
Sbjct:   69 QPTRLHKNRKKRGHVSAGHGRIGKHRSHPGGRGNAGGQHHHRILFDKYXXXXXXXXXMRQFHKMKNREFCPTVNVDKIWGMLPEGTLEATKTAGGKAPVLDLVKLGVFKVLGKGRLPEAPIIVKAKYFSKEAEKKIKAAGGACLLTA 215
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A6G0XSZ1_9STRA (Ribosomal_L18e/L15P domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A6G0XSZ1_9STRA)

HSP 1 Score: 203 bits (516), Expect = 5.240e-61
Identity = 101/147 (68.71%), Postives = 117/147 (79.59%), Query Frame = 1 
Query:    4 PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQA-KAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            P+   KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKF             H+LRNR HCP VN++KLWS++ E   + A KA DGKAP+IDVT +GYFKVLGKG+LP++P+IV+AK FS+ AE KIKA GGACLL+A
Sbjct:    2 PTATHKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFHPGYFGKVGMRQFHLLRNRYHCPTVNVEKLWSLVSEEVKDAAEKAKDGKAPIIDVTKSGYFKVLGKGRLPSIPVIVKAKYFSQEAENKIKAVGGACLLTA 148
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BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Match: A0A3M6VBX9_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Oomycota TaxID=4762 RepID=A0A3M6VBX9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 6.680e-61
Identity = 117/148 (79.05%), Postives = 131/148 (88.51%), Query Frame = 1 
Query:    1 QPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILFDKFXXXXXXXXXXXXXHVLRNREHCPIVNLDKLWSMLPEGTMEQA-KAGDGKAPVIDVTDNGYFKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA 441
            +PSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRIL D  XXXXXXXXXXXXX +L+NR HCP VN+++LW+++ E T EQA KA DGKAPVIDVT  GYFKVLGKG+LP VP+IV+AK FS  AE+KIKAAGGACLL+A
Sbjct:   19 RPSRFSKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRILMDXXXXXXXXXXXXXXXXLLQNRTHCPTVNVERLWTLVSEKTKEQAEKAKDGKAPVIDVTKAGYFKVLGKGRLPEVPVIVKAKYFSAEAEKKIKAAGGACLLTA 166
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig140.2364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX12_ECTSI2.160e-8297.26Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
A0A7S2WUG5_9STRA8.560e-6670.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CNF5_9STRA3.710e-6480.27Ribosomal protein L18e/L15P n=2 Tax=Tribonema minu... [more]
A0A7S2AU89_9STRA8.600e-6380.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V1V341_HETAK1.630e-6280.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U1J2_9STRA9.030e-6274.66Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
M4BUV9_HYAAE1.320e-6180.27Ribosomal_L18e/L15P domain-containing protein n=24... [more]
A0A7S1TZC0_9STRA1.460e-6174.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0XSZ1_9STRA5.240e-6168.71Ribosomal_L18e/L15P domain-containing protein n=8 ... [more]
A0A3M6VBX9_9STRA6.680e-6179.05Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig140contigE-siliculosus-1a_F_contig140:7936..12425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size273
Model size1215
Exons3
Ec32 orthologEc-10_003900.1
Ec32 ortholog descriptionRibosomal protein L18e/L15P
Hectar predicted targeting categoryother localisation
KEGG ModuleM00177
KEGG Pathwayko03010,ko04340,map03010,map04340
KEGG koko:K02900,ko:K10394,ko:K11273
Preferred nameRPL27A
Seed eggNOG ortholog2880.D7FX12
Seed ortholog evalue1.6e-39
Seed ortholog score168.3
Taxonomic scopeEukaryota
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03036,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC3.6.4.13
EggNOG OGsCOG0200@1,KOG1742@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009791,GO:0009892,GO:0009908,GO:0009987,GO:0010229,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048367,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090567,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig140.2364.1prot_E-siliculosus-1a_F_contig140.2364.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig140 9816..11654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.6843698-UTR-E-siliculosus-1a_F_contig140:7935..81001622927913.6843698-UTR-E-siliculosus-1a_F_contig140:7935..8100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 7936..8100 +
1696318735.0991576-UTR-E-siliculosus-1a_F_contig140:7935..81001696318735.0991576-UTR-E-siliculosus-1a_F_contig140:7935..8100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 7936..8100 +
1622927913.6946619-UTR-E-siliculosus-1a_F_contig140:9809..98151622927913.6946619-UTR-E-siliculosus-1a_F_contig140:9809..9815Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 9810..9815 +
1696318735.1125786-UTR-E-siliculosus-1a_F_contig140:9809..98151696318735.1125786-UTR-E-siliculosus-1a_F_contig140:9809..9815Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 9810..9815 +
1622927913.7297509-UTR-E-siliculosus-1a_F_contig140:11654..124251622927913.7297509-UTR-E-siliculosus-1a_F_contig140:11654..12425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 11655..12425 +
1696318735.1459737-UTR-E-siliculosus-1a_F_contig140:11654..124251696318735.1459737-UTR-E-siliculosus-1a_F_contig140:11654..12425Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig140 11655..12425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927913.7079563-CDS-E-siliculosus-1a_F_contig140:9815..99591622927913.7079563-CDS-E-siliculosus-1a_F_contig140:9815..9959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 9816..9959 +
1696318735.1224713-CDS-E-siliculosus-1a_F_contig140:9815..99591696318735.1224713-CDS-E-siliculosus-1a_F_contig140:9815..9959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 9816..9959 +
1622927913.7199533-CDS-E-siliculosus-1a_F_contig140:11525..116541622927913.7199533-CDS-E-siliculosus-1a_F_contig140:11525..11654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 11526..11654 +
1696318735.1318767-CDS-E-siliculosus-1a_F_contig140:11525..116541696318735.1318767-CDS-E-siliculosus-1a_F_contig140:11525..11654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig140 11526..11654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig140.2364.1

>prot_E-siliculosus-1a_F_contig140.2364.1 ID=prot_E-siliculosus-1a_F_contig140.2364.1|Name=mRNA_E-siliculosus-1a_F_contig140.2364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=91bp
MRHFHVLRNREHCPIVNLDKLWSMLPEGTMEQAKAGDGKAPVIDVTDNGY
FKVLGKGKLPTVPIIVRAKVFSKLAERKIKAAGGACLLSA*
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mRNA from alignment at E-siliculosus-1a_F_contig140:7936..12425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig140.2364.1 ID=mRNA_E-siliculosus-1a_F_contig140.2364.1|Name=mRNA_E-siliculosus-1a_F_contig140.2364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4490bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:7936..12425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCGTCTCGTTTCTCGAAGAACCGCAAGAAGCGGGGGCACGTCTCGGC
GGGCCACGGGCGTATCGGGAAGCACAGGAAGCATCCTGGCGGGCGGGGTA
ACGCCGGTGGACAGCACCACCACCGTATCCTCTTCGACAAGTTCCACCCT
GGGTACTTCGGAAAGGTGCGCCGCCGGAAAGCTTTCTAACCCTGTGCTGG
TTGATCTCTCTTCTCTGTACGCGTTCTGTCGTCCCCCACCTCCTCTCTGC
AGGCTGGGTGCCCTTTTCTCGATTGGTGTGTTGCATGTTGGGGGTGTACA
GACGTACAGCAGGAGTGCACAGCAGCAGCAGTTCTGCTGTGCTGATGTAT
TCTACTCTACTGTACGCCCATTGAGTCCTTGGGCGTCGTTGCCGCGGGAG
CGCAACGCAGCAGCAGAGGGAGAGCTGCCGCAGATTCCCACACGGGTTGA
TTTGCCCACAAATTATACAAAAACATCGGCCATCCTTGTGTTTTGCATGT
TTTTGTTTGAAGGTACTTTGTGTCACCCGGCGCGCCCATGGTCGTTCTGC
CCATTTTTTTGTGACCTTTCCCCGCATCTGCCCGAGCGTCGAACACTGCT
GTACATGTCGTTTGTTGGGTGCATCTGACCTTTCCAATGATGGTTCTGCA
GCTGGGTAAGGGGTGTTGACGTTGTGAATCGAAAGTGGTTTGCTCTTGGC
CCAGTGGCGATTACATGCTGTCATCGTCATCTAGTCTTGACGTTGAAAAC
CGTCCACGGGTTGTAGGCGATGCCCAGCACCGACGGATGTTTTCCCCACC
TCGACAACACTGCTGTAGCCCGAAAAGACCCAGTCGTACAGCGGTATCGT
ATTACCCCCCGATGTAACGTTTGTTTGATGGGGAGAGGCCAAAGGGATTG
AATGTAAGGGATTAATTGCCTGGACAACGCTGACGAACGACTTCGGCTTA
CGATGGATGGGTCGGTCCATATTTTCGACACATTGATGTATAAACACCGC
AAGTACACTCCGGGCAACGGCATTGTCTAGCTCCACCCCGGACTGCAACG
ATACCCTTTATATGCCTATCCATCGGCGTCCATCTGAGTGGAAAAGAACA
CGACCCCACGCTTGGCGCTGTGGTTGCGTGCAACGCTTGATGTGAAAGAT
TTTATCCCGTTTCAACCTAGTGGGATAAACGAGATAACTTTTTCGCGAGT
TGCTGGGCCGTGGGTCGGTCACTGTAGAAACGACTACCTTGTAGGTTGCG
TCAGAAACAGCACTCTCTAGGCCAATTTTTCGGAACTCGACTACTCTGCA
GCGAAAACAGCGACGGTGCCGAAAAAACCGGCGTTTGAACCGTCTCGTGG
AATCTTACGAAGTCTTTTCGTTTTATTTTATCATGAATCTTAGTCTTGGC
TACTCGGTGGCTATTATTGGGCCCGAGATTTGTGGTGTCTTGTGCAACCT
CTGGTAAATTGGTCACCGCGCCTGACCCTTGCTCGAAAGGGGGCTTCGGC
TGAAGGGAGAAAACGAGTCTGCTGTTCCACCTTCACGCCTACGCCTAGTT
TTGTTTTTGTGGGCACCAAGCACGACTTGGAGGGGGTTGGGTGTAGGCAA
AATGGAAGCAGCTTCTTGACGGGGAGACCCCCTCCCCCCCCGATCGGCTT
TTCGTCGCCCTTCTCGCCTCGAATGAAGCACATTTTCCTCCACTTCGGGT
TGTGCTTGACCCGTCACAATCTGTTTATTCCTCTACGGTAGCTCATGTCT
GCCTCATTTTGTTTTTTTCTGTCTGCGCTGTTTGGTGGTCTGCCCTGCTG
GTGAGGTAATACAAAGAACCATAACCGTCCTATCTCATCCCTCGAACCTC
CCTCCACCCGACAACAACAACCAGGTGGGTATGCGCCACTTCCACGTGTT
GCGCAACCGGGAACACTGCCCCATCGTGAACCTCGACAAGCTGTGGTCCA
TGCTGCCCGAGGGGACCATGGAGCAGGCCAAGGCTGGCGACGGAAAGGCG
CCGGTCATCGACGTGACTGACAACGTGAGGTTTTGTGGTTTCTTGACGTA
CTTGTACAAACTTTTTTCTTGTATTGAAACTGCGTGGCCTATTCGCTCTG
TGTGTACCGTTGTGTAGCGTGTCTTGTGTTGGCGTTTCCTCCCTTTTTTT
TTGTTGTGTGTGACTTGTGGCTTCGTAATTCTTCATCTCCTGTGTTGTTA
TTGATTGTGTACATTTACCCGCTGGGTGTTGCGTGTTGTTGGTTGCCGCA
CAAGCGCACGGCGCGATTTTTCATGATTCCAAACAACAAACTGATTACCA
CATGACACACAATACTCAATTGTAGTCGTACTGTATGGGGTAGAGAGGAA
AGCTTCGAAAGGAGGAAGGCGCCATGGGTGGGAGGTACACACACGTGAGA
GATGCCTCAGAAAAGAGACGCCGAAAAATGCCTGACCTGCGGCATCCATT
GCTTCAAGCGAAACGTGCCACGAAAAAAAAAGTTGAGAAATGCGCGATAC
CAAAGCTTTTGCAACCGCGCACATTTGGAACACCTCGTATCATCGATTCC
CCGATGCATTTTTATATCGGTCAACTTGTCGACTTTCTTGTAGTCTGTCT
AAGAACCGAGGGAGGAAGAGCTGTCCTGCTGCTGACAGCGACTTATCTTG
CCAACTGGAGAGTTATCAAGGGCAGTTGACGGCGTCAAGTGACTTGAACC
AACTACTGTAATAATTACTAGAACCAGAGGGCGAGAAAACCAAATCCTTG
ACTTCCGGAACAATATCCGGGCGGTCAAGCGTGACTAGCTCTTGGCACAG
CACAGCGCACCGCATGGCGCGATACGTGCCGGCCGCGCTGAGTACATTCT
TGCTGCCCGCGAGAACGGGAAAGAACGAAAATATTGGTTTAAACGACCCT
ACACAAAATCTTGGACGCACCGCAGAGCAGCATTCGAGGCGTCACCCGGA
GTTGGGCTTCAACCCGTGCAGATTCTGCTTTAATTTCTTTGTGTACCCTC
AAGTGCCTGCTTTCTCGAAGGGGCGACTGCAATTAGCCTCCGCTGAAAAG
CTCAACAACCGTTGATCTTCCTTGTGTTGGTCCTGTTTGTTTTGTATCGC
AGCCGCATGTGCTGTTGCTCCGCTTCAATGTACAGTATGTACCCCCACCC
CCCCTATACGTTGCTGGAGGCGGCGGTACGCTTGGCCTATTGCATCTGTC
CTTTTGAAGCCGCGACACCCGGCGTGTAGCGGCACAAGTTGCTGGTGGTG
ATGGCGAACAAACTGAACGATGTCGGTTGCTATACGATGAAAACCTTTGC
TGGAACGGTGTTTGCTTCAGCGACTCACGTCGGCGTTCCAACCATGGAAT
TTTTTTGGCTCACCGCGTTTGCCGTCTGCTGCTGTCCACCTTCCCGCCTT
TTTTTTTTTTGCTCTGCTTGGCTCTTTTTACTTCCCTTGACTTGACGTGC
AACATTTTTCGATCGACATGTGCTTTCCGCCTCGACCCCCACCTGTCGCA
ATACTTTCCCGCATTATTGACACAGGGCCTATTTTCTCCTCCACCCTTTA
TCCCCATCGGTCTTGCTACTTTCCCGTGTTGTTGATACAGGGCTACTTCA
AGGTGCTGGGCAAGGGAAAGCTCCCCACGGTGCCCATCATCGTGCGCGCC
AAGGTGTTCAGCAAGCTCGCCGAGCGGAAGATCAAGGCGGCAGGAGGAGC
TTGCCTCCTCTCCGCTTAGGCGTCGCCACCTCGACGATTTGCTTGGCAGC
TGTAACAACCCTTTGCCGGCCTCTACTGGGTTCTGGATATGTAGTGCATG
TGTCCGGTTTTCCGCAGAGAGTACGGTGTGGGTGGAGTAGGGCACGGGGG
CTGGTGGGTTTTTGGTGTGGTGGAGATCGGTTGTTGGTTGTCCCGTAGGA
GGCGTACACGTGGCGTACCGCTCCTCGCCGGCCGCTTCTGATAGGTCCGG
TGTCGGGTACAGCAGTGCTGCTGCTGCCTCTGGTGGTGGTGGTGTTGGTG
GGCGTCCAATTTGATGTCGCCGGGCATCAGCCGAAGAACTGCACACTCAC
GCTCAAGAATAAAAAAATAAACACAACATCTGTCAGGGTAATGAATGGTG
TGCCGTGGCAGCCGGTCGGACCTCCCTCCCGACTGCTTGGTAAACGTGTA
CCACGCTCGATTGTTGCAGTCGTGCACGATAGCGCGACGTCCTTGGCCGT
GTCCTTTGGCCCGTGCTGCACCCATGTAGTCTAACTCCAGACTAGGCACG
GCGCTCTGGAGACGGATAAGTTCCGGGCACCCACTCGTACAAATTCCCGC
CACACTGCGAAGCCGTTCAGGAGGACGGCGGCTCAATCTTCGACACCCGA
CACTCCCGGTCCCGCGAAATGCTAATAGCTGGTAGTACGTCGATTTCGAG
GCTGGTTTTCTCGAGCGAAAATTTGGCAGCAATCTCCTGGGAGCGTAAGA
AACAACACGGCCCAATCATCCTCTCGCTCATAAAGCCGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig140:7936..12425+

>mRNA_E-siliculosus-1a_F_contig140.2364.1 ID=mRNA_E-siliculosus-1a_F_contig140.2364.1|Name=mRNA_E-siliculosus-1a_F_contig140.2364.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig140:7936..12425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCCACTTCCACGTGTTGCGCAACCGGGAACACTGCCCCATCGTGAA
CCTCGACAAGCTGTGGTCCATGCTGCCCGAGGGGACCATGGAGCAGGCCA
AGGCTGGCGACGGAAAGGCGCCGGTCATCGACGTGACTGACAACATGCGC
CACTTCCACGTGTTGCGCAACCGGGAACACTGCCCCATCGTGAACCTCGA
CAAGCTGTGGTCCATGCTGCCCGAGGGGACCATGGAGCAGGCCAAGGCTG
GCGACGGAAAGGCGCCGGTCATCGACGTGACTGACAACGGCTACTTCAAG
GTGCTGGGCAAGGGAAAGCTCCCCACGGTGCCCATCATCGTGCGCGCCAA
GGTGTTCAGCAAGCTCGCCGAGCGGAAGATCAAGGCGGCAGGAGGAGCTT
GCCTCCTCTCCGCTTAGGGCTACTTCAAGGTGCTGGGCAAGGGAAAGCTC
CCCACGGTGCCCATCATCGTGCGCGCCAAGGTGTTCAGCAAGCTCGCCGA
GCGGAAGATCAAGGCGGCAGGAGGAGCTTGCCTCCTCTCCGCTTAG
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