mRNA_E-siliculosus-1a_F_contig14.2356.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14.2356.1
Unique NamemRNA_E-siliculosus-1a_F_contig14.2356.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.390e-58
Identity = 93/97 (95.88%), Postives = 96/97 (98.97%), Query Frame = 2
Query:    2 GGTEEEEGYGDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 292
            G TEEE+GYGDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDAC+EFNIPYNAHPTLW+AYASYLKHLVVCSEMS
Sbjct:  595 GDTEEEDGYGDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHLVVCSEMS 691          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 1.740e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 2
Query:  104 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 292
            MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS
Sbjct:    1 MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 63          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.220e-23
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 2
Query:  107 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 271
            GGINYQIEHHLFPSM HM YA +AP+V+  C EF IPY+AH TLWSAYASYL+ L
Sbjct:    2 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU)

HSP 1 Score: 98.2 bits (243), Expect = 1.700e-21
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   35 DWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSEMS 292
            DWGE+QVR+SGNF+  N   T  MGGINYQIEHHLFPS+ H+ Y  I+ IVK  C EFNIPY  + ++ SA    L H++  S+ S
Sbjct:  359 DWGEMQVRNSGNFATSNKVFTYFMGGINYQIEHHLFPSVCHVHYPAISSIVKKTCAEFNIPYVEYDSVVSAVNECLTHMLNVSDTS 444          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: UPI0006964E57 (fatty acid desaturase n=1 Tax=Aureispira sp. CCB-QB1 TaxID=1313421 RepID=UPI0006964E57)

HSP 1 Score: 96.7 bits (239), Expect = 5.650e-21
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   26 YGDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHLVVCSE 286
            Y  DWG +QV  + NF +GN F+T   GG+ YQIEHHLFP++S+    EIAPIVK+ C+EF++PY+ +PTL+S Y ++  ++   S+
Sbjct:  351 YPRDWGSLQVESTVNFEHGNWFLTMMTGGLGYQIEHHLFPTISYSRLHEIAPIVKETCKEFDLPYHYYPTLFSVYRAHFSYIKSMSK 437          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: UPI0012E13FAB (acyl-CoA desaturase n=1 Tax=Sphingobacterium endophyticum TaxID=2546448 RepID=UPI0012E13FAB)

HSP 1 Score: 95.5 bits (236), Expect = 7.010e-21
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   32 DDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASY 259
            D+W   Q++ + NF+ GN F+T  +GG+N+Q+EHHLFP +SH+ Y E+  IVK  C EF+IPYN +PT WSA+ S+
Sbjct:  269 DEWMVHQLQSTSNFATGNKFLTWLLGGLNFQVEHHLFPKISHIHYPELNKIVKSTCREFSIPYNEYPTFWSAFNSH 344          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A4Y6Q468_9DELT (Acyl-CoA desaturase n=2 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6Q468_9DELT)

HSP 1 Score: 94.7 bits (234), Expect = 1.000e-20
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   35 DWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 271
            DW   Q+  + +F+  NP +T  +GG+NYQ+EHHLFP +SH+ Y ++A IV++ CEEF +PY+A PTLW    S+ +HL
Sbjct:  233 DWATHQLMTTVDFAQKNPLITWYVGGLNYQVEHHLFPRISHIHYPKLAEIVRETCEEFGVPYHAQPTLWGGIRSHFRHL 311          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A176W6Z5_MARPO (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W6Z5_MARPO)

HSP 1 Score: 96.3 bits (238), Expect = 1.230e-20
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 2
Query:   38 WGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 271
            W E+QVR + NFS+ + F T   GG+N+QIEHHLFP + H+ Y  I PIVK  C+EFN+PY ++PT W+A  ++ +HL
Sbjct:  579 WAEMQVRTTTNFSSRSMFWTHISGGLNHQIEHHLFPGVCHVHYPSIQPIVKATCDEFNVPYTSYPTFWAALRAHFQHL 656          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: A0A6C0ESA5_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ESA5_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 5.580e-20
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2
Query:   29 GDDWGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 271
            G DW + Q+ +SGNF NGN   T A  GIN+QIEHHLFP++    Y  IAPIV++ C+E N+PY  HPTL SAY S++K +
Sbjct:  316 GSDWAKRQICNSGNFMNGNRIWTMAFSGINHQIEHHLFPNICGHNYTYIAPIVEEFCKENNLPYVHHPTLISAYNSFMKKI 396          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Match: UPI0019BF28EB (Acyl-CoA desaturase n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI0019BF28EB)

HSP 1 Score: 93.2 bits (230), Expect = 5.790e-20
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 2
Query:   38 WGEVQVRHSGNFSNGNPFVTQAMGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 271
            W E QV+ + NF+ GNPF+   +GG+N+Q+EHHLFP +SH+ Y  I+ IV+  C++F +PYN +PT+WSA  S+ + +
Sbjct:  273 WAEHQVKTTCNFAMGNPFINWYVGGLNFQVEHHLFPKISHVHYPAISKIVEAQCKQFGLPYNYYPTMWSALCSHFRFM 350          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY7_9PHAE2.390e-5895.88Cytochrome b5 heme-binding domain-containing prote... [more]
D7G102_ECTSI1.740e-40100.00Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A835YNM2_9STRA3.220e-2374.55FA_desaturase domain-containing protein (Fragment)... [more]
A0A5K0U7T4_9VIRU1.700e-2154.65Cytochrome b5-like heme/steroid binding domain n=1... [more]
UPI0006964E575.650e-2148.28fatty acid desaturase n=1 Tax=Aureispira sp. CCB-Q... [more]
UPI0012E13FAB7.010e-2151.32acyl-CoA desaturase n=1 Tax=Sphingobacterium endop... [more]
A0A4Y6Q468_9DELT1.000e-2048.10Acyl-CoA desaturase n=2 Tax=Persicimonas caeni Tax... [more]
A0A176W6Z5_MARPO1.230e-2051.28Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6C0ESA5_9ZZZZ5.580e-2054.32Cytochrome b5 heme-binding domain-containing prote... [more]
UPI0019BF28EB5.790e-2047.44Acyl-CoA desaturase n=1 Tax=Rhizobacter sp. TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14contigE-siliculosus-1a_F_contig14:39534..40844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size192
Model size386
Exons3
Ec32 orthologEc-22_001490.1
Ec32 ortholog descriptionFatty acid desaturase, partial
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01004
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EC1.14.19.31
EggNOG OGs2SE5J@2759,COG3239@1
EggNOG free text desc.Fatty acid desaturase
KEGG koko:K12418
Seed eggNOG ortholog2880.D7G102
Seed ortholog evalue7.5e-31
Seed ortholog score139.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14.2356.1prot_E-siliculosus-1a_F_contig14.2356.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14 39625..40282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.6845922-UTR-E-siliculosus-1a_F_contig14:39533..396241622927910.6845922-UTR-E-siliculosus-1a_F_contig14:39533..39624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 39534..39624 -
1696318733.7207038-UTR-E-siliculosus-1a_F_contig14:39533..396241696318733.7207038-UTR-E-siliculosus-1a_F_contig14:39533..39624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 39534..39624 -
1622927910.7323306-UTR-E-siliculosus-1a_F_contig14:40282..403331622927910.7323306-UTR-E-siliculosus-1a_F_contig14:40282..40333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 40283..40333 -
1696318733.768938-UTR-E-siliculosus-1a_F_contig14:40282..403331696318733.768938-UTR-E-siliculosus-1a_F_contig14:40282..40333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 40283..40333 -
1622927910.7478898-UTR-E-siliculosus-1a_F_contig14:40792..408441622927910.7478898-UTR-E-siliculosus-1a_F_contig14:40792..40844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 40793..40844 -
1696318733.783843-UTR-E-siliculosus-1a_F_contig14:40792..408441696318733.783843-UTR-E-siliculosus-1a_F_contig14:40792..40844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 40793..40844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.6968718-CDS-E-siliculosus-1a_F_contig14:39624..396971622927910.6968718-CDS-E-siliculosus-1a_F_contig14:39624..39697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 39625..39697 -
1696318733.7392256-CDS-E-siliculosus-1a_F_contig14:39624..396971696318733.7392256-CDS-E-siliculosus-1a_F_contig14:39624..39697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 39625..39697 -
1622927910.7145343-CDS-E-siliculosus-1a_F_contig14:40163..402821622927910.7145343-CDS-E-siliculosus-1a_F_contig14:40163..40282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 40164..40282 -
1696318733.7571003-CDS-E-siliculosus-1a_F_contig14:40163..402821696318733.7571003-CDS-E-siliculosus-1a_F_contig14:40163..40282Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 40164..40282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14.2356.1

>prot_E-siliculosus-1a_F_contig14.2356.1 ID=prot_E-siliculosus-1a_F_contig14.2356.1|Name=mRNA_E-siliculosus-1a_F_contig14.2356.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
MGGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYA
SYLKHLVVCSEMS*
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mRNA from alignment at E-siliculosus-1a_F_contig14:39534..40844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14.2356.1 ID=mRNA_E-siliculosus-1a_F_contig14.2356.1|Name=mRNA_E-siliculosus-1a_F_contig14.2356.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1311bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:39534..40844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGGGTACTGAGGAGGAGGAAGGGTACGGCGATGATTGGGGAGAGGTGC AGGTGTGTACTTTGTTTCGTTTGTTGGCGCCGGCCGTGCTATCCGGCTGA TCGATATAAGTTTGCGTTATGGTTAGCGAGTACAAAATCGACGTCTCCGA AAGGTGTGTGTTCTGCTATTCATAAGCATCGAAGCTGTGACCAAAGAATG GTCGAGATAGAAGGCGCGTCACACCCTGTTTGGCGTTCAGGGATAAAGGC GTACGCGTACGCGAATCTCTGCAAACCAGGAGCGTGAGGTCCATGTCTGA ACGACGCCCAAAAAAATACGCATCCACCCAGCCGTTCACACTCACACGCC CGATTTTTTGTGACACACACCCTCGTGCGTTTGCTATACGTTACGGCTGC TACCGCGGTCAAATACTCTGAAGGCCGAGTCAAGTGTCACTGACAAGGAC CCTATCATATCAACTGACAAAGACCTCACCCTACGTTCACGGTACCCCCT CCACGCGCCAGGTGCGACACAGCGGGAATTTCAGCAACGGTAACCCCTTC GTGACGCAGGCGATGGGCGGGATAAACTACCAGATCGAGCACCACCTTTT CCCCTCCATGTCTCACATGCTGTACGCAGAGATAGCCCCAATCGTCAAGG ACGCCTGCGAGGAATTCAACATCCCGTACAAGTGAGAAGGGGGGGAATTA CGTTGTGTGTTTTGTGACCAGCTGTCTGGTGTCGCATGTTGAGGCCGTAA GTCACCTTCCACGTACAGAGGTCTGCTGGTGACTGCCGTGCCAAACTTCC AGCCCTTTCTGGTTGGTTGTGGTCGAGCCTTGGTCCATTGTTCCCACATG GTATCATGCGGTTTGGTTGCTGTCAGTTATACCCATGGGTATTTCCGTAA GAAACGAGTGGCTAATCGTAAACTAGACCGCCCTCAACGTTCGCTCGGTT GCTCCACCACCAAGTCCAGTCTTGACCGACCCACCCCCCTAGACCCTTAA CTTCCGCTCTCACCCCCTCCTCGCCGGCACTTCCTCCATGTTACACCCGA TGCGCCTGGTCTACCGTATCTCCGCCCTACGACGGCTTCTTGGTGGTATA CACGGCGTACGCCCCGGCGTTCTCGTCTCGGCCATGAAAATTGGCAGCGC TCACCCGACCTTGTGGTCGGCCTACGCGTCGTACCTGAAGCACCTCGTTG TCTGCAGCGAGATGAGTTGAGGGTTTGCGGGGGGGGGCATGCGAAGACCC ACGGTGCGCCTTTCACGGAAGGTGTCGAACGACAATGTTGTTTGCGGTGG AAGGAAGGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14:39534..40844-

>mRNA_E-siliculosus-1a_F_contig14.2356.1 ID=mRNA_E-siliculosus-1a_F_contig14.2356.1|Name=mRNA_E-siliculosus-1a_F_contig14.2356.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:39534..40844- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGGGATAAACTACCAGATCGAGCACCACCTTTTCCCCTCCATGTC
TCACATGCTGTACGCAGAGATAGCCCCAATCGTCAAGGACGCCTGCGAGG
AATTCAACATCCCGTACAAATGGGCGGGATAAACTACCAGATCGAGCACC
ACCTTTTCCCCTCCATGTCTCACATGCTGTACGCAGAGATAGCCCCAATC
GTCAAGGACGCCTGCGAGGAATTCAACATCCCGTACAACGCTCACCCGAC
CTTGTGGTCGGCCTACGCGTCGTACCTGAAGCACCTCGTTGTCTGCAGCG
AGATGAGTTGACGCTCACCCGACCTTGTGGTCGGCCTACGCGTCGTACCT
GAAGCACCTCGTTGTCTGCAGCGAGATGAGTTGA
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