mRNA_E-siliculosus-1a_F_contig14.2355.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14.2355.1
Unique NamemRNA_E-siliculosus-1a_F_contig14.2355.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 679 bits (1752), Expect = 1.290e-238
Identity = 352/392 (89.80%), Postives = 360/392 (91.84%), Query Frame = 2
Query:  281 MRVARTLVQLGLLAAVVVGTGYLFVFGPRASAPKEHQADTTTKVDGLRSPDNLDTVPGSEHRPPGKDIPAAAXXXXXXXPAXXXXXATT--AATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGRVVPPP 1450
            MRV R LVQL LLAA+V+GTGYLF FGPRASAP   QADTTT VDGLRSPDNLDTVPGSEHRPPGKDIPAA XXXXXXX  XXXXX     AATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPA SSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDY+MF+SEK+RLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK             DLDYEFYEAVLRDAAESAAGPPETVWVVGEF DEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGV TEVHFPLT+Q++GVTGPSIAVDEGRYVYRDEAGRVVPPP
Sbjct:    1 MRVVRKLVQLLLLAAIVIGTGYLFAFGPRASAPAPQQADTTTTVDGLRSPDNLDTVPGSEHRPPGKDIPAAXXXXXXXXXXXXXXXXXXXXAATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPARSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK-------------DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRDEAGRVVPPP 379          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 1.800e-141
Identity = 205/225 (91.11%), Postives = 210/225 (93.33%), Query Frame = 2
Query:  776 MVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGRVVPPP 1450
            MVGLETVKFRGVR+ELGDPTPRSIEMEGWFQDY+MF+SEK+RLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK             DLDYEFYEAVLRDAAESAAGPPETVWVVGEF DEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGV TEVHFPLTKQ+KGVTGPSIAVDEGRYVYRDEAGRVVPPP
Sbjct:    1 MVGLETVKFRGVRQELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK-------------DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRDEAGRVVPPP 212          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI000E65365C (hypothetical protein n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI000E65365C)

HSP 1 Score: 80.9 bits (198), Expect = 1.780e-12
Identity = 95/304 (31.25%), Postives = 130/304 (42.76%), Query Frame = 2
Query:  572 VRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGM-----------ACFPGVRPVGPAPSSPE--MVGLETVKFRGVRRELG----DPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSK-GVTGPSIAVD--EGRYVYRD 1423
            V L+F+G LGNNLF+YA AR LA+ LG AL  +PA   R  F  + R  G+           A  P  RP G     P+   V  E   + G   +L         R I + G+FQ        ++R+R+   L P      A GP D+VIH    R  L      KL+ +A             L+  FY   L    ES    P TV V G   D+  L   L    P  +R ++  D       L+ A R+V+A+STFSWW A+L    +V  P   +    +  P +A++  E RY   D
Sbjct:    3 VELHFVGHLGNNLFQYALARVLAEELGLALQCRPAR-ERPGFEAVERASGIVDRLDQWHHRFADVPLQRP-GREIDHPQWRQVMGEQDGWHGHGVDLPFLLRSGRERRIVLRGYFQRTEYVHPWRDRVRRWYRLPPPAPA-FAAGPRDVVIH---VRQSLDM----KLLGRA-------------LEPSFYARAL----ESMTPAPRTVHVCGLGLDDPALTAALAPWRP--RRLDL--DAVGTLAVLAHARRIVLANSTFSWWGAYLATEAQVIHPRPVRGYWSLDRPEVALEVPEDRYTVVD 275          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI00114CC053 (hypothetical protein n=2 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI00114CC053)

HSP 1 Score: 77.0 bits (188), Expect = 8.180e-11
Identity = 74/272 (27.21%), Postives = 121/272 (44.49%), Query Frame = 2
Query:  569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKF-----GLLTR-PEGMACFPGVRPVGPAPSSPEMV--GLE--TVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPL 1354
            +++L   G +GNNLF+YA AR LA+ LG+AL ++ + Y   K       LL+   +      G R   P   +  M   G +   +   G+R    D   R I ++G+F+ Y +FR+ K R+R   A+DP   G     P D+VIH R  R +        ++F  +            +   FY  +L     +       +++ G FG +E +     +  P       ++D    F F+    R++ + STF+WW  FL  A E+H P+
Sbjct:    1 MIQLRMQGLIGNNLFQYAFARILAEDLGYALEVKHSSYKPGKNIPQLEDLLSHFRDAPLAIDGKRFSRPVDRTALMGHNGFDGFRIDLEGMRNCRQD---RKILIKGFFERYEIFRTHKSRIRSWFAVDPIDLGYHI-APDDIVIHIR--RGDF-------IVFSRA------------ISLSFYLDLLEKLDFAR------LYICG-FGLDEEVKASFSKFGPIYIEGSPIDD----FRFMIGFNRIIQSQSTFAWWAGFLSKAEEIHAPV 236          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A7C7C2S9_9FLAO (Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7C2S9_9FLAO)

HSP 1 Score: 70.1 bits (170), Expect = 1.310e-9
Identity = 63/285 (22.11%), Postives = 124/285 (43.51%), Query Frame = 2
Query:  569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHR--NYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPS--IAVDEGRY 1411
            ++++N++GR+GNN+F+Y+  R LA+ LG  L   P P  R  +            PG        ++ +++ ++    + +  +      +S+ + G+FQ Y +++  KERLR+     P      A    D+VIH R  +Y + L                    P    L  E+Y + +  ++       + + +V +  +         + +P +    +++D    F +L+ A +++++ S+FS+WV FL  A E++ P   +     G       DE RY
Sbjct:    1 MIKVNYIGRMGNNMFQYSFGRILAEELGMHLVSNPIPEFRATY---------QSVPGKS------NNTDVLIVDDSNCKDILDKKESLVDKSLLLNGFFQQYTLYKPYKERLRQW--FKPKKMIEKAK-EADIVIHIRLGDYMSTLI-------------------PSHWALPAEYYLSCIEMSS------AKNIHIVTDDPNHS-FLNNFSKLNPKIINGNVIQD----FTYLTSAKKIILSRSSFSFWVGFLSEAEEIYSPNPDKGLWADGRQDLFVDDEERY 237          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A7R9SV16_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV16_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 2.170e-7
Identity = 80/311 (25.72%), Postives = 125/311 (40.19%), Query Frame = 2
Query:  566 GIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTR--------PEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRR----ELGDPTPRSIEMEGWFQDYNMFRSEKERLR-------KIMALDPSCCGPT-APGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLD--YEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTK--QSKGVTGPSIAVD-EGRYVYRD 1423
            G+V L++ GR GNNLF+YA AR L   LGF +    A   R      +R        PE +      +           V + + KF         E   P    I ++ +  DY +F+  K  LR       +  A +        APG  D+V+H R           E  + ++   +G ++   L +     +Y+ VL     S       + +V       PL   L ++      A   +D    F +L  A ++VM+ S+F+WW A L  ATE+H+PL      + V    + +D E RY+Y D
Sbjct:  133 GVVSLDYNGRFGNNLFQYAFARILNLELGFEVQTVQAHAGRSNLYEASRIMHERSVVPESVPARTRTKLSDDFMEDQPNVVVRSNKFGNADMCSLIETCRPAIVHI-IDAFLHDYQLFKPYKRLLRCHWFNFPRFEASNSETVRRVGAPGAEDVVVHVR-------LGDLETRLDRSFEESGKNEKLFLHIPAPLAYYKQVLSGIQFSRV-----LLLVEPQSVNHPLVLDLVKEFDAKVLAS--QDFLLDFWYLLEAKKIVMSPSSFAWWGALLSNATEIHYPLIGYYHHQNVRRVKLIIDDEPRYIYHD 428          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.280e-6
Identity = 63/223 (28.25%), Postives = 98/223 (43.95%), Query Frame = 2
Query:  791 TVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLR---KIMALDPSCCGPTAPGPGDLVIHHR-----NYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGR 1435
            T   + +RR L       ++  G++Q Y ++R     LR   ++  L+ S     +P   D++IH R     N+    T E Y + +F       LD+          +   ++  A   A  P  V  + +  +   +  R++ D     R   VE  F    +L+RA RLV+  ST+SWW A++G ATEVH P      GV    +  DE RYV+ D A R
Sbjct:   28 TPLHKQLRRALNRDHFTCLKTLGYWQHYALYRGLGSPLRSHFRLRDLELS----ESPRKTDVIIHVRLCKTQNHYKLYTYENYFRHVFAR-----LDN----------WRGRVKVCAACDAARPGVVRDLVKHLNATVVSPRIRGDG----RGRSVEADF---AYLARATRLVVTESTYSWWAAYVGQATEVHAP------GVGTVPVPADERRYVFHDIASR 218          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: I7DV43_PHAIB (Uncharacterized protein n=18 Tax=Roseobacteraceae TaxID=2854170 RepID=I7DV43_PHAIB)

HSP 1 Score: 58.9 bits (141), Expect = 1.150e-5
Identity = 71/277 (25.63%), Postives = 108/277 (38.99%), Query Frame = 2
Query:  569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTR-------------------PEGMACFPGV-RPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATG--LDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRA---EMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFL 1324
            I RL+  GRLGN +F+YAA RALADRLG ++++       +  G+LTR                   P G A + G+ + +G  P     VGL      G   +  D +  S  + G++Q    F    ER+R+                     +     AE+ A   E          G  L     +  D  +YEA L    +   G P TV+V   F D+ P + +     P  K        +  +     +S     ++ +S+FSWW A+L
Sbjct:    3 ITRLH--GRLGNQMFQYAAGRALADRLGVSVALDSRGAELRGEGVLTRVFDLDLATPDILPPLRQRAPLGYALWRGLGQHLGTGPKLRREVGL------GYNPDFVDWSDNSY-LHGYWQSERYFAQSAERIRRDFTFPE---------------YSNQQNAEMAARIGETNAISLHVRRGDYLTLAAHVLCDQAYYEAALAQVLDGLEGQP-TVYV---FSDD-PQWAKENLPLPCDKVVVDFNGADTDYEDMRLMSLCKHNIIGNSSFSWWAAWL 250          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI001E60A3E3 (alpha-1,2-fucosyltransferase n=1 Tax=Pseudophaeobacter sp. MA21411-1 TaxID=2899119 RepID=UPI001E60A3E3)

HSP 1 Score: 57.4 bits (137), Expect = 3.600e-5
Identity = 67/263 (25.48%), Postives = 103/263 (39.16%), Query Frame = 2
Query:  590 GRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGV------RRELGDPTPRSIE-------MEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMV-----EDQFHAFCFLSRAPRLVMAHSTFSWWVAFL 1324
            GRLGN +F+YAAARALA RL   +++      R+  G+LTR   +     + P  P P   +   L    +RG+      RRE G     + E       + G++Q    F     ++R                P      +    A++T +    L  +      L     +  D  +YEA L    +  AG   TV+V   F D+    K    + P   R  +V     E  F     +S     ++ +S+FSWW A+L
Sbjct:    8 GRLGNQMFQYAAARALAHRLHCPVALDSRGAERRGEGVLTRVFDLP----LTPPAPLPPLKDEALLRYALWRGLGLAPKFRRERGLGYNPAFENWGDDSYLHGYWQSERYFAGIANQIRADFTF-----------PEVSNTQNAEMAAQITGDNAISLHVRRGDYVALS--AHVLCDQAYYEAALARLLDGLAGGDPTVYV---FSDDPDWAKA---NLPLPCRKVVVDFNGPETDFEDMRLMSLCQHNIIGNSSFSWWAAWL 247          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A1G7W6K7_9RHOB (Glycosyl transferase family 11 n=1 Tax=Sulfitobacter delicatus TaxID=218672 RepID=A0A1G7W6K7_9RHOB)

HSP 1 Score: 56.2 bits (134), Expect = 8.400e-5
Identity = 71/263 (27.00%), Postives = 112/263 (42.59%), Query Frame = 2
Query:  590 GRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLT--------RPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELG-------DPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVE--DQFHA-FCFLSRAPRLVMAHSTFSWWVAFL 1324
            GRLGN +F+YAA  ALA R+G  L++     + K  G LT        +PE M      RP+  A ++  ++G    KFR   RE G       +     I + G++Q    F + ++ L ++  + P    P +P   ++        A + +     L  +      L    + D  Y  Y+  L   A+    PP TV+V   F D+ P + R   + P  K    +   D  H     +S     ++A+STFSWW A+L
Sbjct:    8 GRLGNQMFQYAAGAALARRVGVPLALDWRRADAKGEGRLTDIFDLPVAKPERMPPGQDARPL--AYAAWRLLGRRP-KFR---REKGLGYNPAFETWGDEIYLHGYWQSQRYFENIRDHLHEVFTVVP----PMSPANAEMA-------ARIASVPSVALHVRRGDYVALGATAACDQAY--YDRALAAVADGLGQPP-TVFV---FSDD-PNWARDNLEVPFEKVIVDLNGPDTAHEDMRLMSLCQHNIIANSTFSWWSAWL 246          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G104_ECTSI1.290e-23889.80Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
D7G107_ECTSI1.800e-14191.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI000E65365C1.780e-1231.25hypothetical protein n=2 Tax=Calidifontimicrobium ... [more]
UPI00114CC0538.180e-1127.21hypothetical protein n=2 Tax=Candidatus Thiosymbio... [more]
A0A7C7C2S9_9FLAO1.310e-922.11Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteria... [more]
A0A7R9SV16_9CHLO2.170e-725.72Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A8J2T2Q7_9STRA1.280e-628.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
I7DV43_PHAIB1.150e-525.63Uncharacterized protein n=18 Tax=Roseobacteraceae ... [more]
UPI001E60A3E33.600e-525.48alpha-1,2-fucosyltransferase n=1 Tax=Pseudophaeoba... [more]
A0A1G7W6K7_9RHOB8.400e-527.00Glycosyl transferase family 11 n=1 Tax=Sulfitobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14contigE-siliculosus-1a_F_contig14:20962..26359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1173
Model size2410
Exons5
Ec32 orthologEc-22_001510.1
Ec32 ortholog descriptionalpha-1,2-fucosyltransferase, putative
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D12B@1,2SGFI@2759
Seed eggNOG ortholog2880.D7G104
Seed ortholog evalue9.4e-193
Seed ortholog score679.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.5661092-UTR-E-siliculosus-1a_F_contig14:20961..210141622927910.5661092-UTR-E-siliculosus-1a_F_contig14:20961..21014Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 20962..21014 +
1696318733.6511674-UTR-E-siliculosus-1a_F_contig14:20961..210141696318733.6511674-UTR-E-siliculosus-1a_F_contig14:20961..21014Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 20962..21014 +
1622927910.5787325-UTR-E-siliculosus-1a_F_contig14:22032..222591622927910.5787325-UTR-E-siliculosus-1a_F_contig14:22032..22259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 22033..22259 +
1696318733.6618297-UTR-E-siliculosus-1a_F_contig14:22032..222591696318733.6618297-UTR-E-siliculosus-1a_F_contig14:22032..22259Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 22033..22259 +
1622927910.6401708-UTR-E-siliculosus-1a_F_contig14:25402..263591622927910.6401708-UTR-E-siliculosus-1a_F_contig14:25402..26359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 25403..26359 +
1696318733.7117355-UTR-E-siliculosus-1a_F_contig14:25402..263591696318733.7117355-UTR-E-siliculosus-1a_F_contig14:25402..26359Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig14 25403..26359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.5933459-CDS-E-siliculosus-1a_F_contig14:22259..228891622927910.5933459-CDS-E-siliculosus-1a_F_contig14:22259..22889Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 22260..22889 +
1696318733.6709752-CDS-E-siliculosus-1a_F_contig14:22259..228891696318733.6709752-CDS-E-siliculosus-1a_F_contig14:22259..22889Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 22260..22889 +
1622927910.606643-CDS-E-siliculosus-1a_F_contig14:23490..236521622927910.606643-CDS-E-siliculosus-1a_F_contig14:23490..23652Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 23491..23652 +
1696318733.6823204-CDS-E-siliculosus-1a_F_contig14:23490..236521696318733.6823204-CDS-E-siliculosus-1a_F_contig14:23490..23652Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 23491..23652 +
1622927910.6204123-CDS-E-siliculosus-1a_F_contig14:24399..245521622927910.6204123-CDS-E-siliculosus-1a_F_contig14:24399..24552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 24400..24552 +
1696318733.690448-CDS-E-siliculosus-1a_F_contig14:24399..245521696318733.690448-CDS-E-siliculosus-1a_F_contig14:24399..24552Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 24400..24552 +
1622927910.630324-CDS-E-siliculosus-1a_F_contig14:25174..254021622927910.630324-CDS-E-siliculosus-1a_F_contig14:25174..25402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 25175..25402 +
1696318733.703-CDS-E-siliculosus-1a_F_contig14:25174..254021696318733.703-CDS-E-siliculosus-1a_F_contig14:25174..25402Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 25175..25402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14.2355.1prot_E-siliculosus-1a_F_contig14.2355.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14 22260..25402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14.2355.1

>prot_E-siliculosus-1a_F_contig14.2355.1 ID=prot_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=391bp
MRVARTLVQLGLLAAVVVGTGYLFVFGPRASAPKEHQADTTTKVDGLRSP
DNLDTVPGSEHRPPGKDIPAAAAAAGAERPATNDDDATTAATRGPGIVRL
NFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMAC
FPGVRPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNM
FRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIF
KASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEP
LFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGV
ATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGRVVPPP*
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mRNA from alignment at E-siliculosus-1a_F_contig14:20962..26359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14.2355.1 ID=mRNA_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:20962..26359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCACACCACCGCGGGCTACCACGGCTTTCGAGGAACACGCCAGATAGC AACGTGAGTGCGTGCAACTTGAGGGCGAAAGAGAGCGTGAGATTGACTCC GTGCTTATCGGCGTATGTAGGCGTACCACGACGCAAACACAACTCTCCGC TCATGACGCTGTTTACCCCCCCCCCAAACACCAGCAAATCCGGGAGGTCG TCTTACAGCGGGGGGCTTGAGTAGCTGCATAGGATGCGTAGCGTCCGTAC TAGCGAGGTGGCTCTGCTGGGATGGATGTAGCGGTCACGAATGGAGTTGG TGCTCTGTGAGGTTGTCGATTGTATTGGGTGTGCGAGGTCCAACGTCACA CCTGCTGCTGATGTACTTGTACCAGTGTCAAGACACCAACACTCGACGTA TGATAAGTATTGCATCGCTTTTACGTATAGTATGGTCAATGATACTTCAG CGGCAATGAGAGCCCACAATCGCTACGCACGGTGTGCCTATTCACCTGGG TGGGCCGAGTACCTCCAACTTGAACTTTTTTCATCCGATCTTCGGAGACG CCGCACGAACACACAGGGCGGGCCCAAAGTACGGCAGAGACTGCTGCATG ACCGCGGCCGTGGTATCTGACTCCTCTTAACGATCGCGGTTCTATGTATC ACTTCCATTTTTACTCGGAGCGATGCTCCAATTTGTCAGTACATGTGCCG GTGCGTTTGAGGGACAGCAACCTCGTGTGTACACAGATTGGCGAAGGCAT GCCTGCACGCAGCGACTCGAGAGCGTCCACTACAGCTTCCACCCTTCAGG ACGGTAGACAATGGCGCGTGACAAAGTGCTACAGTAGGCACGAACAACAT CGGCACAACTTTGTAGCACTGTGCGCAGCACGCGTGGTGGTTGCTTCGTA CTCGTACACTAAAGACTAAACGATCTGCTACATGTATTTTCCGAAACACA CCGAACCACCAACCCTGTTCGTACCCTTCAATTGCAGCCGTTGTTCTCTC GCGCCCAGAAGAAACCCTACCCATTCATGATGACCCCCCCCCCGCGCGCG CTGTTGGCCCGATGAAATCAGTGGCCCCGTACCGGGAGATGCCGTGGCTG GCAGGCCAGAGAGACGTTACTGCCAGACAGAGCCCACGGCAAGTCTGGCT TGGCAGCGTCGTGGCGCAATAAAGCACTGGACGGAGAAAATCGTGCCTTT GCTACAAGCAGTGCCGAGGGCGGTTTTCGTGAACGGATTTTTGCTAACAG AGTCCGCACGCGTGGTACCGGGCGCGGGAGTATCTGTTCTCGCCGCAAAT GCGAGTGGCGCGGACGCTTGTACAACTGGGGTTGCTGGCAGCCGTCGTCG TCGGGACTGGGTACCTGTTCGTGTTCGGCCCCCGCGCCTCAGCGCCAAAG GAGCATCAGGCAGACACAACAACCAAAGTCGACGGCTTGAGGAGCCCGGA CAACCTCGACACGGTGCCCGGTTCCGAGCACCGACCACCGGGCAAGGACA TACCGGCGGCGGCGGCGGCGGCGGGAGCGGAGCGGCCGGCGACTAATGAC GATGATGCCACCACCGCCGCCACCAGGGGCCCGGGTATCGTGCGGCTCAA CTTCATGGGCCGACTGGGCAACAACCTCTTCGAGTACGCCGCCGCCCGGG CGCTCGCGGACCGCCTGGGCTTCGCCCTGTCGATCCAGCCGGCGCCGTAC AACCGCAAGAAGTTCGGCCTCCTCACGAGGCCGGAGGGGATGGCGTGCTT CCCCGGGGTGCGGCCGGTGGGACCTGCGCCGTCGAGCCCGGAGATGGTCG GGTTGGAGACGGTCAAGTTTCGCGGGGTCCGCCGGGAGCTGGGGGACCCC ACGCCCAGGTCCATCGAGATGGAAGGGTGGTTCCAGGACTACAACATGTT TAGGTCGGAGAAGGAGCGGCTCCGCAAGGTCAGCGGCGTATTTGTTTGGG GGGGGCGGGGGGACGATTCCAGAATGTTTAGGGCGGAGAAGGAACTGCTC CGCAGGTCATCGCGGGCTAATTTTGTTTTTTTTTGGGGTGGTTCCAGAAC TACGGCATGTTTTGGTCGGATAAGGAGCGGTTCTGCAGGGTCGGCAAGCA GCGCCTGCTGTTTTTTTCGTTTCTGTTGCGTTCTGTCTCCGAACCGAGGA TCATTTCATGTAAGTTTGTGTTGGATGAGGCCTCCTGCGGCGGGGAGGCG TCCTCGCCTGGCATGTCACCTGCGCTGAGAAAAAACACGGCGGTTGGTTT TGTAGTTCCGACCTCCCCCCGGTGGTAGTGTGGTGTTCGGAAGGAGCGTT CCCTGTATGTGGTAGCCAGCTGGCGGACAAAGTGTGGCCTATCAGGCGGC ACACCCATCAGTTGCAGCCATAACCCCGCTTGAAGCACGTGCACCAGTAG CACGAGCACCAAGACAACGGTTGTACGGTGAGATGCAGCAGCGCTAGACT ACCCTGACAACCCATACTCTCCTCTCCGTTATTGGGCTTCTTGTGCCCCT TCGGGCATTAATTCCCCTGGCTCGGTCAGATAATGGCGCTGGACCCATCG TGTTGCGGCCCGACCGCTCCCGGCCCTGGCGACCTCGTGATCCACCACCG CAACTACAGGGCGGAGCTAACCGCTGAGCAGTACGAAAAACTCATCTTCA AGGCAAGCAGCGCTACTGGCCTAGATGATCCGTGTTCTCTTGTTGTTTTT CTGGTCGGACGTGATGGACCGTTGCGTCGATGGGGTCATTGCACTGTGGT CTCTCATTGGACTGAATCCTCTCCATTCAAACCCCTCCCCTATTGCACCC GGGGGTTTCCCGAGCCGAGAATTCTTTTGAGCGCCTAACCGCAGGCATCA ATAACTTTTTCGTATGTATTATGCGCGCTCTCTTTTCCTCCGTTGGTTCA CGTTGGAGTGCTTCGTCTCTTTTGTAACACAGCAGCCTTCACAGGGTTTT TCGCTTAAGTAAACACGTTGGATAAATCATGCAATGGGGGAAATTGGGTT TGGATTAGGGGTAGGGATAGGGTCTGCGCACACACACCCCTGTTCTATAT CCTCGGAAAATTATTTTCTCGCGTAGGCGTTCCTACGAACAACCGTAACC CCCCCTATACCCGTACCCCCTTACTGCACATGATACCCGGGCAATCCTCG AACCGAGAGAATTGCTTGGAGCAAGTAGTGCAGTTCCGCCATTTTCCTTT CCTCCGTTCGCTCCGTTCCTGAGACGCCCCACATCGTGATCCGTGACAAC CGGCCTTTTTTGGCAAACGAGGCGTGTCTGTGGCAAGGGGCTGCATGTTG GCCACGCCATGGCGTGCAGTTGCCGGTTGGTCCCTCGGATGGTGCGAATG GTATTTTGGGGTTCCACGTTCTGGCCGCACGCCCCCCCCCCCCCCTCTAA CAACGTAATTTCTGTTTCCCGGGCCCCGTTTGTTGAAGGACTTGGACTAC GAGTTCTACGAGGCGGTGCTGCGGGATGCCGCAGAATCTGCGGCCGGCCC GCCCGAAACAGTGTGGGTGGTGGGAGAGTTCGGCGACGAGGAGCCTCTGT TCAAGCGTCTGCAACAGGACCACCCCAACGTGAAAAGAGCTGTGAGTTTT TTGTTATTTTTTTTCAATTTTTTAGGAAACGCGGCCGTTTCGCGGATGGG TCATTGTGGCGTTGTTCGAAAGATGCCGGCATGCATACAAAACAAGGCAA GAACGGTACCAGAGAAATGTTAGTATTTCGGTGTGTGATGCATTGAGCTA GACGCGAAGGATGAATGTAGCCAGATTTTTGTCTTAGGGTTACCTGTTTA GCGTGCCCCTTGGATTCCCAGCCTACTGTGTGTTCTACCAACGCGCACGT GTACGGCGGAAAGCCCCGGGACCGACGGGCCTCGAAGCAGTCGACCCGCC CGCCCATAAACTGCCGGTCCCCGTTTACATACGCAGCAACAACAGAGGCT TGTAAATATGGTAGTTGTCAGGGTTTTAGGCCCTTGGCAGATGTGTCAAG GCCGAAGTCCCACACTAAACTAGTATACTTGCCGTCAAAAACGCTCTTGA CAAGCCTGAACAAGCCTGTCAACCCCTGTCAACCCCTGTCAACTGCCATC TTGATTAAAAAGGCAGCTTGAATAATCTTCCCGCCGCTGCACGATTGCCG CAATCTTTGCCGCTCGGCGGCGAACGGCCGAACTAATGACAACACGAACG ACGCGACGTGCAGGAAATGGTGGAAGACCAGTTCCACGCGTTCTGCTTCC TGTCTCGAGCCCCCCGGCTGGTCATGGCCCACAGCACGTTCAGCTGGTGG GTGGCTTTCCTCGGCGTTGCGACGGAGGTGCACTTCCCCCTGACCAAGCA GAGCAAGGGGGTCACCGGGCCGAGCATAGCGGTGGACGAGGGCCGGTACG TCTACCGCGATGAGGCGGGACGCGTGGTCCCCCCTCCGTAGGCCTGATTT ATCTCGCAACCGTTCGTCCGTGAAGCTGGCGTTTCGTCGCACGCCCTGTG AACCGATTTTCATAGCCAGATATCCTCCACAGGATTGACAGCGCCAACAA CAAGCGGCGTGGAAGCCGGTCTCGTCGAGGGGTTTCCGGTGACGTATCGG ATAAGTTATGCATGCATCGGATAGTTTCTGCATCCTCTTCGTCGTTGAGC ATTCGGGTTTTGAAAATGGGTCAAAAGGGGGTGTGGTATTCGTTTCGGTT CCTGTTGTTGGTTGGGTGTGTTCGAATGTCTGGTATTTGCGGTTCACTGC TAGAGAACCTCGGGTGTTGATACCACCCCGGTTTCGTTCGTTGGCCCCCC TCCAAGGCCGGTCCTCGTGTTTAGGAGGTAAATCCTACAAGGATGGCAGC ACGAGGTGCCTTATTGTGTGCATGGCGGGGAGAACGGGGGCCAGTTGGAG GCTGGGAACAGTGTCGACCAAGGCAATGTGGCGTACGTGTGTGGGCCGCG TGCGGAATTGAGTTATTTAGTCAGATCTGGTGTGTTGTGTGTCCAGAAGA TATGGGAATTTGGGGGGTCTCGAGCCATCCACTGAGCCCCTACGTATGGA TGTTTTGTGTGATTCAACTGGTGCTGCTGCTCGGATGGAGGCTAACGTAC TCGCGACTGGGACACCTCCTACGGTGCCAGACTTAGCACGCGACCAACAC TGTATACATTCTATGATAGAGCTCGTACAGAGAGCGAGAGTGTGGCTTGT CGTTCGGGACAGGGAATTTGGACGGGGAGTAAGAGTCTACGTCACGGTTT GTGCGCCCGGGACATCATCTGAGAACACGTACCCTTTATTGGCAGTACTC GCTTGGTCTCAGGTCAGGCGGAGGGCGTATCTACGCGCCACCGGCACTCA CTCCGCCACTCCAGGGTTGAAAACCCGCAGTTTCTTTTCAAAATTGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14:20962..26359+

>mRNA_E-siliculosus-1a_F_contig14.2355.1 ID=mRNA_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2346bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:20962..26359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGAGTGGCGCGGACGCTTGTACAACTGGGGTTGCTGGCAGCCGTCGT
CGTCGGGACTGGGTACCTGTTCGTGTTCGGCCCCCGCGCCTCAGCGCCAA
AGGAGCATCAGGCAGACACAACAACCAAAGTCGACGGCTTGAGGAGCCCG
GACAACCTCGACACGGTGCCCGGTTCCGAGCACCGACCACCGGGCAAGGA
CATACCGGCGGCGGCGGCGGCGGCGGGAGCGGAGCGGCCGGCGACTAATG
ACGATGATGCCACCACCGCCGCCACCAGGGGCCCGGGTATCGTGCGGCTC
AACTTCATGGGCCGACTGGGCAACAACCTCTTCGAGTACGCCGCCGCCCG
GGCGCTCGCGGACCGCCTGGGCTTCGCCCTGTCGATCCAGCCGGCGCCGT
ACAACCGCAAGAAGTTCGGCCTCCTCACGAGGCCGGAGGGGATGGCGTGC
TTCCCCGGGGTGCGGCCGGTGGGACCTGCGCCGTCGAGCCCGGAGATGGT
CGGGTTGGAGACGGTCAAGTTTCGCGGGGTCCGCCGGGAGCTGGGGGACC
CCACGCCCAGGTCCATCGAGATGGAAGGGTGGTTCCAGGACTACAACATG
TTTAGGTCGGAGAAGGAGCGGCTCCGCAAGATGCGAGTGGCGCGGACGCT
TGTACAACTGGGGTTGCTGGCAGCCGTCGTCGTCGGGACTGGGTACCTGT
TCGTGTTCGGCCCCCGCGCCTCAGCGCCAAAGGAGCATCAGGCAGACACA
ACAACCAAAGTCGACGGCTTGAGGAGCCCGGACAACCTCGACACGGTGCC
CGGTTCCGAGCACCGACCACCGGGCAAGGACATACCGGCGGCGGCGGCGG
CGGCGGGAGCGGAGCGGCCGGCGACTAATGACGATGATGCCACCACCGCC
GCCACCAGGGGCCCGGGTATCGTGCGGCTCAACTTCATGGGCCGACTGGG
CAACAACCTCTTCGAGTACGCCGCCGCCCGGGCGCTCGCGGACCGCCTGG
GCTTCGCCCTGTCGATCCAGCCGGCGCCGTACAACCGCAAGAAGTTCGGC
CTCCTCACGAGGCCGGAGGGGATGGCGTGCTTCCCCGGGGTGCGGCCGGT
GGGACCTGCGCCGTCGAGCCCGGAGATGGTCGGGTTGGAGACGGTCAAGT
TTCGCGGGGTCCGCCGGGAGCTGGGGGACCCCACGCCCAGGTCCATCGAG
ATGGAAGGGTGGTTCCAGGACTACAACATGTTTAGGTCGGAGAAGGAGCG
GCTCCGCAAGATAATGGCGCTGGACCCATCGTGTTGCGGCCCGACCGCTC
CCGGCCCTGGCGACCTCGTGATCCACCACCGCAACTACAGGGCGGAGCTA
ACCGCTGAGCAGTACGAAAAACTCATCTTCAAGGCAAGCAGCGCTACTGG
CCTAGATGATCCGTGTTCTCTTATAATGGCGCTGGACCCATCGTGTTGCG
GCCCGACCGCTCCCGGCCCTGGCGACCTCGTGATCCACCACCGCAACTAC
AGGGCGGAGCTAACCGCTGAGCAGTACGAAAAACTCATCTTCAAGGCAAG
CAGCGCTACTGGCCTAGATGATCCGTGTTCTCTTGACTTGGACTACGAGT
TCTACGAGGCGGTGCTGCGGGATGCCGCAGAATCTGCGGCCGGCCCGCCC
GAAACAGTGTGGGTGGTGGGAGAGTTCGGCGACGAGGAGCCTCTGTTCAA
GCGTCTGCAACAGGACCACCCCAACGTGAAAAGAGCTGACTTGGACTACG
AGTTCTACGAGGCGGTGCTGCGGGATGCCGCAGAATCTGCGGCCGGCCCG
CCCGAAACAGTGTGGGTGGTGGGAGAGTTCGGCGACGAGGAGCCTCTGTT
CAAGCGTCTGCAACAGGACCACCCCAACGTGAAAAGAGCTGAAATGGTGG
AAGACCAGTTCCACGCGTTCTGCTTCCTGTCTCGAGCCCCCCGGCTGGTC
ATGGCCCACAGCACGTTCAGCTGGTGGGTGGCTTTCCTCGGCGTTGCGAC
GGAGGTGCACTTCCCCCTGACCAAGCAGAGCAAGGGGGTCACCGGGCCGA
GCATAGCGGTGGACGAGGGCCGGTACGTCTACCGCGATGAGGCGGGACGC
GTGGTCCCCCCTCCGTAGGAAATGGTGGAAGACCAGTTCCACGCGTTCTG
CTTCCTGTCTCGAGCCCCCCGGCTGGTCATGGCCCACAGCACGTTCAGCT
GGTGGGTGGCTTTCCTCGGCGTTGCGACGGAGGTGCACTTCCCCCTGACC
AAGCAGAGCAAGGGGGTCACCGGGCCGAGCATAGCGGTGGACGAGGGCCG
GTACGTCTACCGCGATGAGGCGGGACGCGTGGTCCCCCCTCCGTAG
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