mRNA_E-siliculosus-1a_F_contig14.2355.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI) HSP 1 Score: 679 bits (1752), Expect = 1.290e-238 Identity = 352/392 (89.80%), Postives = 360/392 (91.84%), Query Frame = 2
Query: 281 MRVARTLVQLGLLAAVVVGTGYLFVFGPRASAPKEHQADTTTKVDGLRSPDNLDTVPGSEHRPPGKDIPAAAXXXXXXXPAXXXXXATT--AATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGRVVPPP 1450
MRV R LVQL LLAA+V+GTGYLF FGPRASAP QADTTT VDGLRSPDNLDTVPGSEHRPPGKDIPAA XXXXXXX XXXXX AATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPA SSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDY+MF+SEK+RLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK DLDYEFYEAVLRDAAESAAGPPETVWVVGEF DEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGV TEVHFPLT+Q++GVTGPSIAVDEGRYVYRDEAGRVVPPP
Sbjct: 1 MRVVRKLVQLLLLAAIVIGTGYLFAFGPRASAPAPQQADTTTTVDGLRSPDNLDTVPGSEHRPPGKDIPAAXXXXXXXXXXXXXXXXXXXXAATRGPGIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPARSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK-------------DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEGRYVYRDEAGRVVPPP 379
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI) HSP 1 Score: 424 bits (1091), Expect = 1.800e-141 Identity = 205/225 (91.11%), Postives = 210/225 (93.33%), Query Frame = 2
Query: 776 MVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGRVVPPP 1450
MVGLETVKFRGVR+ELGDPTPRSIEMEGWFQDY+MF+SEK+RLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK DLDYEFYEAVLRDAAESAAGPPETVWVVGEF DEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGV TEVHFPLTKQ+KGVTGPSIAVDEGRYVYRDEAGRVVPPP
Sbjct: 1 MVGLETVKFRGVRQELGDPTPRSIEMEGWFQDYSMFKSEKDRLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFK-------------DLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEGRYVYRDEAGRVVPPP 212
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI000E65365C (hypothetical protein n=2 Tax=Calidifontimicrobium TaxID=2828371 RepID=UPI000E65365C) HSP 1 Score: 80.9 bits (198), Expect = 1.780e-12 Identity = 95/304 (31.25%), Postives = 130/304 (42.76%), Query Frame = 2
Query: 572 VRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGM-----------ACFPGVRPVGPAPSSPE--MVGLETVKFRGVRRELG----DPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSK-GVTGPSIAVD--EGRYVYRD 1423
V L+F+G LGNNLF+YA AR LA+ LG AL +PA R F + R G+ A P RP G P+ V E + G +L R I + G+FQ ++R+R+ L P A GP D+VIH R L KL+ +A L+ FY L ES P TV V G D+ L L P +R ++ D L+ A R+V+A+STFSWW A+L +V P + + P +A++ E RY D
Sbjct: 3 VELHFVGHLGNNLFQYALARVLAEELGLALQCRPAR-ERPGFEAVERASGIVDRLDQWHHRFADVPLQRP-GREIDHPQWRQVMGEQDGWHGHGVDLPFLLRSGRERRIVLRGYFQRTEYVHPWRDRVRRWYRLPPPAPA-FAAGPRDVVIH---VRQSLDM----KLLGRA-------------LEPSFYARAL----ESMTPAPRTVHVCGLGLDDPALTAALAPWRP--RRLDL--DAVGTLAVLAHARRIVLANSTFSWWGAYLATEAQVIHPRPVRGYWSLDRPEVALEVPEDRYTVVD 275
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI00114CC053 (hypothetical protein n=2 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI00114CC053) HSP 1 Score: 77.0 bits (188), Expect = 8.180e-11 Identity = 74/272 (27.21%), Postives = 121/272 (44.49%), Query Frame = 2
Query: 569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKF-----GLLTR-PEGMACFPGVRPVGPAPSSPEMV--GLE--TVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPL 1354
+++L G +GNNLF+YA AR LA+ LG+AL ++ + Y K LL+ + G R P + M G + + G+R D R I ++G+F+ Y +FR+ K R+R A+DP G P D+VIH R R + ++F + + FY +L + +++ G FG +E + + P ++D F F+ R++ + STF+WW FL A E+H P+
Sbjct: 1 MIQLRMQGLIGNNLFQYAFARILAEDLGYALEVKHSSYKPGKNIPQLEDLLSHFRDAPLAIDGKRFSRPVDRTALMGHNGFDGFRIDLEGMRNCRQD---RKILIKGFFERYEIFRTHKSRIRSWFAVDPIDLGYHI-APDDIVIHIR--RGDF-------IVFSRA------------ISLSFYLDLLEKLDFAR------LYICG-FGLDEEVKASFSKFGPIYIEGSPIDD----FRFMIGFNRIIQSQSTFAWWAGFLSKAEEIHAPV 236
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A7C7C2S9_9FLAO (Alpha-1,2-fucosyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7C2S9_9FLAO) HSP 1 Score: 70.1 bits (170), Expect = 1.310e-9 Identity = 63/285 (22.11%), Postives = 124/285 (43.51%), Query Frame = 2
Query: 569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHR--NYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPS--IAVDEGRY 1411
++++N++GR+GNN+F+Y+ R LA+ LG L P P R + PG ++ +++ ++ + + + +S+ + G+FQ Y +++ KERLR+ P A D+VIH R +Y + L P L E+Y + + ++ + + +V + + + +P + +++D F +L+ A +++++ S+FS+WV FL A E++ P + G DE RY
Sbjct: 1 MIKVNYIGRMGNNMFQYSFGRILAEELGMHLVSNPIPEFRATY---------QSVPGKS------NNTDVLIVDDSNCKDILDKKESLVDKSLLLNGFFQQYTLYKPYKERLRQW--FKPKKMIEKAK-EADIVIHIRLGDYMSTLI-------------------PSHWALPAEYYLSCIEMSS------AKNIHIVTDDPNHS-FLNNFSKLNPKIINGNVIQD----FTYLTSAKKIILSRSSFSFWVGFLSEAEEIYSPNPDKGLWADGRQDLFVDDEERY 237
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A7R9SV16_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV16_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 2.170e-7 Identity = 80/311 (25.72%), Postives = 125/311 (40.19%), Query Frame = 2
Query: 566 GIVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTR--------PEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRR----ELGDPTPRSIEMEGWFQDYNMFRSEKERLR-------KIMALDPSCCGPT-APGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLD--YEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTK--QSKGVTGPSIAVD-EGRYVYRD 1423
G+V L++ GR GNNLF+YA AR L LGF + A R +R PE + + V + + KF E P I ++ + DY +F+ K LR + A + APG D+V+H R E + ++ +G ++ L + +Y+ VL S + +V PL L ++ A +D F +L A ++VM+ S+F+WW A L ATE+H+PL + V + +D E RY+Y D
Sbjct: 133 GVVSLDYNGRFGNNLFQYAFARILNLELGFEVQTVQAHAGRSNLYEASRIMHERSVVPESVPARTRTKLSDDFMEDQPNVVVRSNKFGNADMCSLIETCRPAIVHI-IDAFLHDYQLFKPYKRLLRCHWFNFPRFEASNSETVRRVGAPGAEDVVVHVR-------LGDLETRLDRSFEESGKNEKLFLHIPAPLAYYKQVLSGIQFSRV-----LLLVEPQSVNHPLVLDLVKEFDAKVLAS--QDFLLDFWYLLEAKKIVMSPSSFAWWGALLSNATEIHYPLIGYYHHQNVRRVKLIIDDEPRYIYHD 428
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.280e-6 Identity = 63/223 (28.25%), Postives = 98/223 (43.95%), Query Frame = 2
Query: 791 TVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLR---KIMALDPSCCGPTAPGPGDLVIHHR-----NYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVATEVHFPLTKQSKGVTGPSIAVDEGRYVYRDEAGR 1435
T + +RR L ++ G++Q Y ++R LR ++ L+ S +P D++IH R N+ T E Y + +F LD+ + ++ A A P V + + + + R++ D R VE F +L+RA RLV+ ST+SWW A++G ATEVH P GV + DE RYV+ D A R
Sbjct: 28 TPLHKQLRRALNRDHFTCLKTLGYWQHYALYRGLGSPLRSHFRLRDLELS----ESPRKTDVIIHVRLCKTQNHYKLYTYENYFRHVFAR-----LDN----------WRGRVKVCAACDAARPGVVRDLVKHLNATVVSPRIRGDG----RGRSVEADF---AYLARATRLVVTESTYSWWAAYVGQATEVHAP------GVGTVPVPADERRYVFHDIASR 218
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: I7DV43_PHAIB (Uncharacterized protein n=18 Tax=Roseobacteraceae TaxID=2854170 RepID=I7DV43_PHAIB) HSP 1 Score: 58.9 bits (141), Expect = 1.150e-5 Identity = 71/277 (25.63%), Postives = 108/277 (38.99%), Query Frame = 2
Query: 569 IVRLNFMGRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTR-------------------PEGMACFPGV-RPVGPAPSSPEMVGLETVKFRGVRRELGDPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATG--LDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRA---EMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFL 1324
I RL+ GRLGN +F+YAA RALADRLG ++++ + G+LTR P G A + G+ + +G P VGL G + D + S + G++Q F ER+R+ + AE+ A E G L + D +YEA L + G P TV+V F D+ P + + P K + + +S ++ +S+FSWW A+L
Sbjct: 3 ITRLH--GRLGNQMFQYAAGRALADRLGVSVALDSRGAELRGEGVLTRVFDLDLATPDILPPLRQRAPLGYALWRGLGQHLGTGPKLRREVGL------GYNPDFVDWSDNSY-LHGYWQSERYFAQSAERIRRDFTFPE---------------YSNQQNAEMAARIGETNAISLHVRRGDYLTLAAHVLCDQAYYEAALAQVLDGLEGQP-TVYV---FSDD-PQWAKENLPLPCDKVVVDFNGADTDYEDMRLMSLCKHNIIGNSSFSWWAAWL 250
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: UPI001E60A3E3 (alpha-1,2-fucosyltransferase n=1 Tax=Pseudophaeobacter sp. MA21411-1 TaxID=2899119 RepID=UPI001E60A3E3) HSP 1 Score: 57.4 bits (137), Expect = 3.600e-5 Identity = 67/263 (25.48%), Postives = 103/263 (39.16%), Query Frame = 2
Query: 590 GRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLTRPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGV------RRELGDPTPRSIE-------MEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMV-----EDQFHAFCFLSRAPRLVMAHSTFSWWVAFL 1324
GRLGN +F+YAAARALA RL +++ R+ G+LTR + + P P P + L +RG+ RRE G + E + G++Q F ++R P + A++T + L + L + D +YEA L + AG TV+V F D+ K + P R +V E F +S ++ +S+FSWW A+L
Sbjct: 8 GRLGNQMFQYAAARALAHRLHCPVALDSRGAERRGEGVLTRVFDLP----LTPPAPLPPLKDEALLRYALWRGLGLAPKFRRERGLGYNPAFENWGDDSYLHGYWQSERYFAGIANQIRADFTF-----------PEVSNTQNAEMAAQITGDNAISLHVRRGDYVALS--AHVLCDQAYYEAALARLLDGLAGGDPTVYV---FSDDPDWAKA---NLPLPCRKVVVDFNGPETDFEDMRLMSLCQHNIIGNSSFSWWAAWL 247
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Match: A0A1G7W6K7_9RHOB (Glycosyl transferase family 11 n=1 Tax=Sulfitobacter delicatus TaxID=218672 RepID=A0A1G7W6K7_9RHOB) HSP 1 Score: 56.2 bits (134), Expect = 8.400e-5 Identity = 71/263 (27.00%), Postives = 112/263 (42.59%), Query Frame = 2
Query: 590 GRLGNNLFEYAAARALADRLGFALSIQPAPYNRKKFGLLT--------RPEGMACFPGVRPVGPAPSSPEMVGLETVKFRGVRRELG-------DPTPRSIEMEGWFQDYNMFRSEKERLRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKASSATGLDDPCSLDLDYEFYEAVLRDAAESAAGPPETVWVVGEFGDEEPLFKRLQQDHPNVKRAEMVE--DQFHA-FCFLSRAPRLVMAHSTFSWWVAFL 1324
GRLGN +F+YAA ALA R+G L++ + K G LT +PE M RP+ A ++ ++G KFR RE G + I + G++Q F + ++ L ++ + P P +P ++ A + + L + L + D Y Y+ L A+ PP TV+V F D+ P + R + P K + D H +S ++A+STFSWW A+L
Sbjct: 8 GRLGNQMFQYAAGAALARRVGVPLALDWRRADAKGEGRLTDIFDLPVAKPERMPPGQDARPL--AYAAWRLLGRRP-KFR---REKGLGYNPAFETWGDEIYLHGYWQSQRYFENIRDHLHEVFTVVP----PMSPANAEMA-------ARIASVPSVALHVRRGDYVALGATAACDQAY--YDRALAAVADGLGQPP-TVFV---FSDD-PNWARDNLEVPFEKVIVDLNGPDTAHEDMRLMSLCQHNIIANSTFSWWSAWL 246 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14.2355.1 >prot_E-siliculosus-1a_F_contig14.2355.1 ID=prot_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=391bp MRVARTLVQLGLLAAVVVGTGYLFVFGPRASAPKEHQADTTTKVDGLRSPback to top mRNA from alignment at E-siliculosus-1a_F_contig14:20962..26359+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14.2355.1 ID=mRNA_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:20962..26359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14:20962..26359+ >mRNA_E-siliculosus-1a_F_contig14.2355.1 ID=mRNA_E-siliculosus-1a_F_contig14.2355.1|Name=mRNA_E-siliculosus-1a_F_contig14.2355.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2346bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:20962..26359+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |