mRNA_E-siliculosus-1a_F_contig14.2354.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: D7FLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB7_ECTSI) HSP 1 Score: 177 bits (449), Expect = 2.990e-56 Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMF+PKDLSELDAAVG
Sbjct: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 93
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE) HSP 1 Score: 173 bits (439), Expect = 7.020e-51 Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
MSG AFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQA MLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMF+PKDLSELDAAVG
Sbjct: 313 MSGTAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAGMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 405
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA) HSP 1 Score: 115 bits (289), Expect = 9.520e-29 Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
MSGN FL+R KE+ D+ LL+ S +KKVG+ TA YT+VQ ML LLWTLKSF +TALFFPSVIGLL++VRL LPK+FS L ELD+AV
Sbjct: 322 MSGNEFLLRIKELCADQSLLKPNSSVKKVGYKTALGYTSVQLGMLGLLWTLKSFRQTALFFPSVIGLLVLVRLAVLPKLFSKDALDELDSAVA 414
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA) HSP 1 Score: 103 bits (258), Expect = 5.140e-24 Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
M GN F R ++ +D KL+ S S +K VG GTA +YTAVQA ML LLWTLKSF +TAL FPSVIGLL+V+RL LPK+FS + L LD V
Sbjct: 423 MCGNGFFERITDLCMDPKLMGSGSVVKAVGRGTALRYTAVQALMLALLWTLKSFSQTALLFPSVIGLLVVMRLTVLPKLFSDRSLRLLDPPVA 515
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A6U4I2T6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I2T6_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 3.420e-21 Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
MSGN FL R KE+ D K L S++ +++VG+ T AKYTA+Q A L LW++KSF TALFFPSVIG+L+++R LP++F +DL LD
Sbjct: 583 MSGNDFLYRIKELCKDSKFLESDAFVRQVGYKTTAKYTAIQVACLAGLWSVKSFNSTALFFPSVIGVLVLIRKFLLPRLFLREDLVVLD 671
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7R9UCL0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL0_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.020e-20 Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
MSGN FL R KE+ +D+K L +S I++VG +YTA+Q L LW +KSF TALFFPSVIGLL+++R LP++FS +DL LD A
Sbjct: 415 MSGNDFLYRIKELAMDKKFLDEDSFIQRVGRSVVFRYTAIQVLCLMGLWAMKSFNSTALFFPSVIGLLVMIRKALLPRLFSKEDLRVLDRAAS 507
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC) HSP 1 Score: 89.4 bits (220), Expect = 9.380e-19 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
M+GN FL R + F DR+LL ES +++ KYTAVQ A L L+TLKS TALFFPSVIG L+V+R V LP++FS +L LDA V
Sbjct: 739 MTGNDFLYRIGDTFADRELLPFESKFRQLPRSVVIKYTAVQLACLAGLFTLKSVRSTALFFPSVIGALMVIRAVVLPRLFSRHELDTLDATVA 831
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7S2F9D6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9D6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.360e-17 Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
M+GN+FL R + +F+D + L + ++ +G KYT +Q L +LW LKSF+ TALFFPSVIGLL+V+R ALPK+F+ +L+ LD
Sbjct: 300 MTGNSFLRRIQGLFLDMEKLPPTASVRLLGRYPVIKYTGIQMGCLAILWGLKSFKPTALFFPSVIGLLVVIRRFALPKLFNEDELAILD 388
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7S3XU58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU58_HETAK) HSP 1 Score: 85.1 bits (209), Expect = 1.910e-17 Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
M+GN FL R K V+ ++ L + ++ G G A +YTAVQAA L LW LK TAL+FPSVIG+L+ +R+ LP +FS ++L LD++VG
Sbjct: 300 MTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 392
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.080e-17 Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1
Query: 1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
M+GN FL R K F D+ +L ++S K +G T KYT++Q L +LW LKS T +FFPSVIGLLI+ R++ +P++FS +++ LD
Sbjct: 577 MTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig14.2354.1 >prot_E-siliculosus-1a_F_contig14.2354.1 ID=prot_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=94bp MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTback to top mRNA from alignment at E-siliculosus-1a_F_contig14:5176..6431+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig14.2354.1 ID=mRNA_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1256bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:5176..6431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14:5176..6431+ >mRNA_E-siliculosus-1a_F_contig14.2354.1 ID=mRNA_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:5176..6431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |