mRNA_E-siliculosus-1a_F_contig14.2354.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14.2354.1
Unique NamemRNA_E-siliculosus-1a_F_contig14.2354.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: D7FLB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB7_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.990e-56
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMF+PKDLSELDAAVG
Sbjct:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 93          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A6H5KFP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.020e-51
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            MSG AFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQA MLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMF+PKDLSELDAAVG
Sbjct:  313 MSGTAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAGMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFTPKDLSELDAAVG 405          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A835ZK65_9STRA (HCO3 transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK65_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.520e-29
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            MSGN FL+R KE+  D+ LL+  S +KKVG+ TA  YT+VQ  ML LLWTLKSF +TALFFPSVIGLL++VRL  LPK+FS   L ELD+AV 
Sbjct:  322 MSGNEFLLRIKELCADQSLLKPNSSVKKVGYKTALGYTSVQLGMLGLLWTLKSFRQTALFFPSVIGLLVLVRLAVLPKLFSKDALDELDSAVA 414          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A836CJA6_9STRA (Bicarbonate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.140e-24
Identity = 55/93 (59.14%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            M GN F  R  ++ +D KL+ S S +K VG GTA +YTAVQA ML LLWTLKSF +TAL FPSVIGLL+V+RL  LPK+FS + L  LD  V 
Sbjct:  423 MCGNGFFERITDLCMDPKLMGSGSVVKAVGRGTALRYTAVQALMLALLWTLKSFSQTALLFPSVIGLLVVMRLTVLPKLFSDRSLRLLDPPVA 515          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A6U4I2T6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I2T6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.420e-21
Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
            MSGN FL R KE+  D K L S++ +++VG+ T AKYTA+Q A L  LW++KSF  TALFFPSVIG+L+++R   LP++F  +DL  LD
Sbjct:  583 MSGNDFLYRIKELCKDSKFLESDAFVRQVGYKTTAKYTAIQVACLAGLWSVKSFNSTALFFPSVIGVLVLIRKFLLPRLFLREDLVVLD 671          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7R9UCL0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCL0_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.020e-20
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            MSGN FL R KE+ +D+K L  +S I++VG     +YTA+Q   L  LW +KSF  TALFFPSVIGLL+++R   LP++FS +DL  LD A  
Sbjct:  415 MSGNDFLYRIKELAMDKKFLDEDSFIQRVGRSVVFRYTAIQVLCLMGLWAMKSFNSTALFFPSVIGLLVMIRKALLPRLFSKEDLRVLDRAAS 507          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A0G4H159_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H159_VITBC)

HSP 1 Score: 89.4 bits (220), Expect = 9.380e-19
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            M+GN FL R  + F DR+LL  ES  +++      KYTAVQ A L  L+TLKS   TALFFPSVIG L+V+R V LP++FS  +L  LDA V 
Sbjct:  739 MTGNDFLYRIGDTFADRELLPFESKFRQLPRSVVIKYTAVQLACLAGLFTLKSVRSTALFFPSVIGALMVIRAVVLPRLFSRHELDTLDATVA 831          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7S2F9D6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9D6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.360e-17
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
            M+GN+FL R + +F+D + L   + ++ +G     KYT +Q   L +LW LKSF+ TALFFPSVIGLL+V+R  ALPK+F+  +L+ LD
Sbjct:  300 MTGNSFLRRIQGLFLDMEKLPPTASVRLLGRYPVIKYTGIQMGCLAILWGLKSFKPTALFFPSVIGLLVVIRRFALPKLFNEDELAILD 388          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: A0A7S3XU58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU58_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 1.910e-17
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG 279
            M+GN FL R K V+ ++  L  +  ++  G G A +YTAVQAA L  LW LK    TAL+FPSVIG+L+ +R+  LP +FS ++L  LD++VG
Sbjct:  300 MTGNGFLGRLKSVWAEKAKLPEDHPVRAAGRGAALRYTAVQAACLGGLWALKMNPATALYFPSVIGVLMGIRIWILPHLFSEEELKALDSSVG 392          
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Match: W7TSJ0_9STRA (Anion exchanger family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSJ0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.080e-17
Identity = 41/89 (46.07%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWTLKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELD 267
            M+GN FL R K  F D+ +L ++S  K +G  T  KYT++Q   L +LW LKS   T +FFPSVIGLLI+ R++ +P++FS  +++ LD
Sbjct:  577 MTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLB7_ECTSI2.990e-5698.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFP7_9PHAE7.020e-5196.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK65_9STRA9.520e-2963.44HCO3 transporter family-domain-containing protein ... [more]
A0A836CJA6_9STRA5.140e-2459.14Bicarbonate transporter n=1 Tax=Tribonema minus Ta... [more]
A0A6U4I2T6_9STRA3.420e-2153.93Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UCL0_9STRA1.020e-2051.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4H159_VITBC9.380e-1952.69Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2F9D6_9STRA1.360e-1748.31Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3XU58_HETAK1.910e-1747.31Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TSJ0_9STRA2.080e-1746.07Anion exchanger family n=2 Tax=Monodopsidaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14contigE-siliculosus-1a_F_contig14:5176..6431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size282
Model size282
Exons3
Ec32 orthologEc-00_002640.1
Ec32 ortholog descriptionBicarbonate transporter, eukaryotic
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsKOG1172@1,KOG1172@2759
EggNOG free text desc.inorganic anion exchanger activity
Seed eggNOG ortholog45157.CMR009CT
Seed ortholog evalue2.3e-12
Seed ortholog score78.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14.2354.1prot_E-siliculosus-1a_F_contig14.2354.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14 5176..6431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.4977913-CDS-E-siliculosus-1a_F_contig14:5175..52981622927910.4977913-CDS-E-siliculosus-1a_F_contig14:5175..5298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 5176..5298 +
1696318733.6214905-CDS-E-siliculosus-1a_F_contig14:5175..52981696318733.6214905-CDS-E-siliculosus-1a_F_contig14:5175..5298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 5176..5298 +
1622927910.5109215-CDS-E-siliculosus-1a_F_contig14:5634..57601622927910.5109215-CDS-E-siliculosus-1a_F_contig14:5634..5760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 5635..5760 +
1696318733.6327538-CDS-E-siliculosus-1a_F_contig14:5634..57601696318733.6327538-CDS-E-siliculosus-1a_F_contig14:5634..5760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 5635..5760 +
1622927910.5231736-CDS-E-siliculosus-1a_F_contig14:6398..64311622927910.5231736-CDS-E-siliculosus-1a_F_contig14:6398..6431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 6399..6431 +
1696318733.6415513-CDS-E-siliculosus-1a_F_contig14:6398..64311696318733.6415513-CDS-E-siliculosus-1a_F_contig14:6398..6431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14 6399..6431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14.2354.1

>prot_E-siliculosus-1a_F_contig14.2354.1 ID=prot_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=94bp
MSGNAFLVRCKEVFVDRKLLRSESDIKKVGFGTAAKYTAVQAAMLTLLWT
LKSFERTALFFPSVIGLLIVVRLVALPKMFSPKDLSELDAAVG*
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mRNA from alignment at E-siliculosus-1a_F_contig14:5176..6431+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14.2354.1 ID=mRNA_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1256bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:5176..6431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGGAACGCTTTCTTGGTAAGGTGCAAGGAAGTCTTCGTTGACCG GAAGCTGCTGCGGAGCGAGAGCGACATCAAGAAGGTTGGCTTCGGCACCG CAGCCAAATACACCGCCGTCCAGGTGTGCACTTGCGATAATTACGCGACG ATTTTTGTTCTTTTTTTTGTGCTAACCGCGTAATTCTTTTTTTCGTCGTG CCGCTGCCGTTCTTTTACTGCCACCGCTCGTGTCTTCCTGTTCTCTCTTC GTGCCTTGACGATGGTGGTCGGGCCTTGACGACGGTGCTGGACCCGCTTT TCACCACATGCCCACACAAACGTAAAACGCCGGGGTTTCCTCTGCAGCCG TACACTGGAAGAAAAACTTTGTCGGTCCCGATCAACCCAACCCTGTTTTT TTGGCTCCGTGCGTCCGCGTCCGCCGCGCGGTTGGCGACATGACCGGTAC CGGTACCAGGCGGCCATGCTTACCCTCCTGTGGACGCTCAAGTCATTCGA GCGGACGGCGCTGTTCTTCCCGTCTGTGATCGGACTTCTCATCGTCGTCC GCCTCGTGGCGCTGCCCAAGATGTTCAGCCCGAAGGTGTGCCTATTGCCT AACCGAGCCAACCCTATCCCTAACGCTGGACAGTTTGCCCCTTCGTCAGC CCTTTCCGTCACGATGAACCGATTTGTTTCTGTTCATCGCAGGCGTTCTC TGAAGGTAGGACACTACTAAAACCCTACCATTTGATGCGGTCCCAAAACG GTTTCGTGTTTTGTTCGGGGAGAAGTGTCTATTTTTCCCTTGGGGCGGTA GTGTCGGCAATGTAGAGAGACGCGAGTTTGCAAGCGGCTCTCGCGAGTGT TGTTCGGACATTGGCGGTGTTGCCTTCTGCACCGTTACTCAACGTATCCG ACAGGTAGTTCCGTGTCATTCCACTCCTAGAAGTTCCCTTGGGGTCTCAT TGTGTGACTGCTTCAACGGCTTTCCCGACATCGAACACGCTGCGTACCAG CACATGTTCTTTACATCGATCTGGGAGGCACGGTTATGTTCTGCGTGCCC CCCAACCTTGTCTGCTGGCGACGATCTGAACGTTTTGTTTAGGGGGGGGG TTGGGTCGTTTTCACCGATGACGGCCGAGCCCTACACTCACAACAGATGG CTCTCTGCCGCGCATGCATATCTGATGCTCTGTATCTTGCGCGTGCTCGC TGTCCACCCGCTGTACTCGCTAGGACTTGTCGGAGCTGGATGCCGCGGTG GGATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14:5176..6431+

>mRNA_E-siliculosus-1a_F_contig14.2354.1 ID=mRNA_E-siliculosus-1a_F_contig14.2354.1|Name=mRNA_E-siliculosus-1a_F_contig14.2354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14:5176..6431+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGGAACGCTTTCTTGGTAAGGTGCAAGGAAGTCTTCGTTGACCG
GAAGCTGCTGCGGAGCGAGAGCGACATCAAGAAGGTTGGCTTCGGCACCG
CAGCCAAATACACCGCCGTCCAGATGAGCGGGAACGCTTTCTTGGTAAGG
TGCAAGGAAGTCTTCGTTGACCGGAAGCTGCTGCGGAGCGAGAGCGACAT
CAAGAAGGTTGGCTTCGGCACCGCAGCCAAATACACCGCCGTCCAGGCGG
CCATGCTTACCCTCCTGTGGACGCTCAAGTCATTCGAGCGGACGGCGCTG
TTCTTCCCGTCTGTGATCGGACTTCTCATCGTCGTCCGCCTCGTGGCGCT
GCCCAAGATGTTCAGCCCGAAGGCGGCCATGCTTACCCTCCTGTGGACGC
TCAAGTCATTCGAGCGGACGGCGCTGTTCTTCCCGTCTGTGATCGGACTT
CTCATCGTCGTCCGCCTCGTGGCGCTGCCCAAGATGTTCAGCCCGAAGGA
CTTGTCGGAGCTGGATGCCGCGGTGGGATAAGACTTGTCGGAGCTGGATG
CCGCGGTGGGATAA
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