mRNA_E-siliculosus-1a_F_contig1399.2351.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1399.2351.1
Unique NamemRNA_E-siliculosus-1a_F_contig1399.2351.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: F0YDV4_AURAN (Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YDV4_AURAN)

HSP 1 Score: 100 bits (248), Expect = 7.570e-27
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK TL KKMKQNRPIPQWIR+RTDN IR+NAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRTLAKKMKQNRPIPQWIRMRTDNKIRWNAKRRHWRRTKLGL 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: H3G5I2_PHYRM (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=H3G5I2_PHYRM)

HSP 1 Score: 99.4 bits (246), Expect = 1.530e-26
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK  L KK KQNRPIPQWIRLRTDNTI+YNAKRRHWRRTKLGL
Sbjct:    1 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: A0A225VYY8_9STRA (60S ribosomal protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYY8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.550e-26
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 QPSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            QPSHKTFRTK  L KK KQNRPIPQWIRLRTDNTI+YNAKRRHWRRTKLGL
Sbjct:   21 QPSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGL 71
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: A0A835YZW6_9STRA (Ribosomal protein L39e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.240e-26
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK TL  K+KQNRPIP WIRLRTDNTIRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRTLAVKLKQNRPIPNWIRLRTDNTIRYNAKRRHWRRTKLGL 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: A0A024TQR4_9STRA (60S ribosomal protein L39 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TQR4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.790e-25
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KK KQNRPIPQWIRL+T NTIRYNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKTILAKKQKQNRPIPQWIRLKTGNTIRYNAKRRHWRRTKLGL 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: T0QFN5_SAPDV (60S ribosomal protein L39 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QFN5_SAPDV)

HSP 1 Score: 97.1 bits (240), Expect = 1.840e-25
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHK+FRTK  L KKMKQNRPIPQWIRL+T NTIRYNAKRRHWRRTKLGL
Sbjct:   17 PSHKSFRTKTILAKKMKQNRPIPQWIRLKTGNTIRYNAKRRHWRRTKLGL 66
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: W4GQW8_9STRA (60S ribosomal protein L39 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQW8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.610e-25
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KK KQNRPIPQWIRL+T NTIRYNAKRRHWRRTKLGL
Sbjct:   29 PSHKTFRTKTILAKKQKQNRPIPQWIRLKTGNTIRYNAKRRHWRRTKLGL 78
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BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: G5AEA8_PHYSP (Uncharacterized protein n=14 Tax=Stramenopiles TaxID=33634 RepID=G5AEA8_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-25
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KK KQNRPIPQWIRLRT+NTI+YNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKRILAKKAKQNRPIPQWIRLRTNNTIKYNAKRRHWRRTKLGL 51
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: M4B7W1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7W1_HYAAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.730e-25
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KK KQNRPIPQWIRLRTDNTI+YNAKRRHWRRTKLG 
Sbjct:    2 PSHKTFRTKRILAKKAKQNRPIPQWIRLRTDNTIKYNAKRRHWRRTKLGF 51
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Match: K3WT32_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WT32_GLOUD)

HSP 1 Score: 95.9 bits (237), Expect = 6.030e-25
Identity = 44/50 (88.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    4 PSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLGL 153
            PSHKTFRTK  L KK KQNRPIPQWIRLRT NTI+YNAKRRHWRRTKLGL
Sbjct:    2 PSHKTFRTKQILAKKQKQNRPIPQWIRLRTGNTIKYNAKRRHWRRTKLGL 51
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1399.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YDV4_AURAN7.570e-2790.20Ribosomal protein L39 (Fragment) n=2 Tax=Pelagomon... [more]
H3G5I2_PHYRM1.530e-2690.20Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A225VYY8_9STRA2.550e-2690.2060S ribosomal protein n=1 Tax=Phytophthora megakar... [more]
A0A835YZW6_9STRA6.240e-2690.00Ribosomal protein L39e n=1 Tax=Tribonema minus Tax... [more]
A0A024TQR4_9STRA1.790e-2588.0060S ribosomal protein L39 n=2 Tax=Aphanomyces inva... [more]
T0QFN5_SAPDV1.840e-2588.0060S ribosomal protein L39 n=1 Tax=Saprolegnia dicl... [more]
W4GQW8_9STRA3.610e-2588.0060S ribosomal protein L39 n=2 Tax=Aphanomyces asta... [more]
G5AEA8_PHYSP3.620e-2588.00Uncharacterized protein n=14 Tax=Stramenopiles Tax... [more]
M4B7W1_HYAAE4.730e-2588.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
K3WT32_GLOUD6.030e-2588.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1399contigE-siliculosus-1a_F_contig1399:25455..26533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size156
Model size156
Exons2
Ec32 orthologEc-26_001730.1
Ec32 ortholog descriptionRibosomal protein L39e domain
Hectar predicted targeting categoryno signal peptide or anchor
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01007,ko03011,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC6.1.1.18
EggNOG OGsCOG0008@1,KOG0002@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000003,GO:0000184,GO:0000956,GO:0002181,GO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019731,GO:0019953,GO:0022414,GO:0022625,GO:0022626,GO:0032501,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042742,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045047,GO:0045087,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048232,GO:0048519,GO:0048609,GO:0050789,GO:0050830,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061844,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
KEGG ModuleM00177,M00179,M00359,M00360
KEGG Pathwayko00970,ko01100,ko03010,map00970,map01100,map03010
KEGG ReactionR03652
KEGG koko:K01886,ko:K02924
KEGG rclassRC00055,RC00523
Preferred nameRPL39
Seed eggNOG ortholog2880.D8LSX1
Seed ortholog evalue1.5e-21
Seed ortholog score107.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.281425-CDS-E-siliculosus-1a_F_contig1399:25454..255031622927910.281425-CDS-E-siliculosus-1a_F_contig1399:25454..25503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1399 25455..25503 -
1696318733.5012555-CDS-E-siliculosus-1a_F_contig1399:25454..255031696318733.5012555-CDS-E-siliculosus-1a_F_contig1399:25454..25503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1399 25455..25503 -
1622927910.2935326-CDS-E-siliculosus-1a_F_contig1399:26426..265331622927910.2935326-CDS-E-siliculosus-1a_F_contig1399:26426..26533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1399 26427..26533 -
1696318733.5181515-CDS-E-siliculosus-1a_F_contig1399:26426..265331696318733.5181515-CDS-E-siliculosus-1a_F_contig1399:26426..26533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1399 26427..26533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1399.2351.1prot_E-siliculosus-1a_F_contig1399.2351.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1399 25455..26533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1399.2351.1

>prot_E-siliculosus-1a_F_contig1399.2351.1 ID=prot_E-siliculosus-1a_F_contig1399.2351.1|Name=mRNA_E-siliculosus-1a_F_contig1399.2351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=52bp
QPSHKTFRTKVTLGKKMKQNRPIPQWIRLRTDNTIRYNAKRRHWRRTKLG
L*
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mRNA from alignment at E-siliculosus-1a_F_contig1399:25455..26533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1399.2351.1 ID=mRNA_E-siliculosus-1a_F_contig1399.2351.1|Name=mRNA_E-siliculosus-1a_F_contig1399.2351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1079bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1399:25455..26533- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCTTCCCACAAGACCTTCCGCACCAAGGTCACCTTGGGCAAGAAGAT
GAAGCAGAACAGGCCCATCCCCCAGTGGATCCGTCTCCGCACGGACAACA
CGATCCGGTGAGTTACCATGAATTAACAAGCACATTTTTTTTTTGTCTAT
GGGGAAAACTAGGTCGTGCGGGCTTTGTGTTGCGAATACGAGGATTTTGT
AGAGCGTTGCTCAGCGGTGACATTTCGAAGATGGCATGAGCCTCACCATC
GAATGGTTATTTGCTGGTTCGCTGCTGTATATCTGCTAACTCGCCGCCAG
ATGTAGCCACATGACGGCCGACTAGTGACGCCTACAAGGGGGATAATCGC
AGGTGGATGGGTGACGACTAACGCGAATTGCAAAACGTAGCGAGAAACGT
GGCTTGTCAAAGTGACCCTGCCTGTAACACTCTATGCTTGTACCATTTCA
CACTACCGTCCTCCGGCTCAACGCTGCCATTGTTGCTGTTGCTGCTGTCA
CTACAATTGGGCTTTTGAAACTTCTCTCAAGCGCCTCCCCTTGCCCCATT
CCGTTCAAAGCAAAGAAGGCAGCGAAAAACAAAATCGTAGAATCGGAAAG
GATGAGGCTCGTTGTAGCCGTCTCTCCTGTTCGTCATGGCTCCCATCATT
CTTGCTGCAGCGGCGTATCCGTGTTTGATGGCGCTCTTGTCTTGTCCCAC
ACATGCCCAGTGAGGCACACTCGCGGTGACACTGCCACTCCATACAGAGC
TGATGCAAGTCGCGCAGATGTTAACACGCGTTGAAATCTCGACGGCACAA
CGACCGCGGGCATGCCGATGCTCCTTTTTTTTTTGTTAAACAGTTTTCGG
TTGTGGCCGTGGTTTTTCTTCCGCTCGCGAAGGAACATCGACGCATCCGA
GCCTTGTGCCAAATGTCTTGGTCCGCAGGTCGGTCCTGTGAAAGGCGTTT
TGTTTCTGACGCCATTGCCCCCCCACCGCTTGCGCTCGTCCACCACTCTT
GGTGTTCGCTCGTTTCCTTTTCGTTCTCAGCTACAACGCCAAGCGCCGCC
ACTGGCGCCGCACGAAGCTCGGCCTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1399:25455..26533-

>mRNA_E-siliculosus-1a_F_contig1399.2351.1 ID=mRNA_E-siliculosus-1a_F_contig1399.2351.1|Name=mRNA_E-siliculosus-1a_F_contig1399.2351.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1399:25455..26533- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCCTTCCCACAAGACCTTCCGCACCAAGGTCACCTTGGGCAAGAAGAT
GAAGCAGAACAGGCCCATCCCCCAGTGGATCCGTCTCCGCACGGACAACA
CGATCCGCAGCCTTCCCACAAGACCTTCCGCACCAAGGTCACCTTGGGCA
AGAAGATGAAGCAGAACAGGCCCATCCCCCAGTGGATCCGTCTCCGCACG
GACAACACGATCCGCTACAACGCCAAGCGCCGCCACTGGCGCCGCACGAA
GCTCGGCCTGTAGCTACAACGCCAAGCGCCGCCACTGGCGCCGCACGAAG
CTCGGCCTGTAG
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