mRNA_E-siliculosus-1a_F_contig1397.2345.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: D7FX00_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX00_ECTSI) HSP 1 Score: 612 bits (1578), Expect = 5.850e-206 Identity = 364/413 (88.14%), Postives = 368/413 (89.10%), Query Frame = 1
Query: 1552 VPRGTAAERGRGSRPLSDADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSTGGLSRRNSFGAXXRRGTARGALAGXXXXXXXXXXD---FEGDSGMMRTASGGSLRGVGGYASRNQXXXXXXXXXXPYDXXXXXXXXXXXXXXXXXXXXXXXX-AGYDSDTMSVMDQDAIRASMKKRGARGTAGTGGRRGDTVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFT 2778
VPRGTAAERGRGSRPLS+ADPFGSNSGRHGAPPSQSAQQQGQGGRASRGST XX XXXXXXXXXX FEGDSGMMRTASGGSLRGVGGYASRNQ PYD XXXXXXXXXXXXXXXXX AGYDSDTMSVMDQDAIRASM+KRGARGTAG GGRRGDTV+YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPA+IRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFT
Sbjct: 54 VPRGTAAERGRGSRPLSEADPFGSNSGRHGAPPSQSAQQQGQGGRASRGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEGDSGMMRTASGGSLRGVGGYASRNQRQQQQRRGRDPYDNTYDAEEXXXXXXXXXXXXXXXXXXAGYDSDTMSVMDQDAIRASMRKRGARGTAGAGGRRGDTVDYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAKIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFT 466
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A6H5JZ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ01_9PHAE) HSP 1 Score: 347 bits (889), Expect = 1.500e-106 Identity = 231/308 (75.00%), Postives = 235/308 (76.30%), Query Frame = 1
Query: 292 ADLPGARTSNNNSGFPAPATQNPFETQALNTGAFHTAGGAAAGXXXASRGVAGGLNEASAGTNSGAGVVEDLFGVAGGEGPGAMVPYGQQQPLESHPLHQHHHRHPAAXXXXHPTYQGAIVPFQXXXXXXXXXXXXGTPVTASNPFDDLLGGVSTAVGTGSGAGILQQQHTQQPHQQQWPGHPFAGSQQQYPXXXXXXXQQQSWLGQGGAARNGDATADGGLQLMQPQYPPHQQQLQIAPVQQPFQQQXXXXLQTVAPGNPFFHAAQDVPQQQQK------------APGADLFGDDPFGSVNSGSKV 1179
ADLPGARTSNNNSGFP PATQNPFE QA XXX VAGGL EA A TNSGAGVVEDLFGV GG GPGAMVPYGQQQPLESHPLH H XXXX XXXXXXXXXXXX T VTASNPFDDLLGGVSTAVGTGSGAGILQQQ+TQQPHQQQWPGHPFAGS QQYP XXXXXX SWLGQGGAARNGDA ADGGLQ MQ QYPPHQQQLQIAPVQQPFQQQ LQTVAPGNPFF AAQD+PQQQQK APGA+LFGDDPFGSVNSGSK+
Sbjct: 10 ADLPGARTSNNNSGFPTPATQNPFENQAXXXXXXXXXXXXXXXXXXXXXXVAGGLIEAPASTNSGAGVVEDLFGVGGGAGPGAMVPYGQQQPLESHPLHLHXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXTSVTASNPFDDLLGGVSTAVGTGSGAGILQQQYTQQPHQQQWPGHPFAGSLQQYPQXXXXXXXXXSWLGQGGAARNGDAAADGGLQPMQSQYPPHQQQLQIAPVQQPFQQQQQ--LQTVAPGNPFFDAAQDLPQQQQKGCSAASERRIRQAPGANLFGDDPFGSVNSGSKM 313
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A6H5JQ14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ14_9PHAE) HSP 1 Score: 274 bits (700), Expect = 9.090e-82 Identity = 143/166 (86.14%), Postives = 146/166 (87.95%), Query Frame = 1
Query: 2317 TYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIK------------VKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKFT 2778
T L +NAARPLRVEFERGQL+QEDNVGQILFKKTVGVPRS+SAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIK VKSFKGHPTPLYFFTVK PKSRLKQLNFASQNLGDLQHLRTSISKFT
Sbjct: 7 TDTSRLSWHQNAARPLRVEFERGQLDQEDNVGQILFKKTVGVPRSFSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKASICCYRRERSVVKSFKGHPTPLYFFTVKPPKSRLKQLNFASQNLGDLQHLRTSISKFT 172
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A6H5JUS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS7_9PHAE) HSP 1 Score: 220 bits (560), Expect = 1.950e-62 Identity = 142/173 (82.08%), Postives = 146/173 (84.39%), Query Frame = 1
Query: 1828 MMRTASGGSLRGVGGYASRNQXXXXXXXXXXPYDXXXXXXXXXXXXXXXXXXXXXXXXAGYDSDTMSVMDQDAIRASMKKRGARGTAGTGGRRGDTVEYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIK 2346
MMRTASGGSLRGVGG ASRNQ P D XXXXXXXXXXXXXXXXX G+DSDTMSVMDQDAIRASM+KRGAR TAG GGRRGDTVE +RARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNG+TVEGLTYQQTLECIK
Sbjct: 1 MMRTASGGSLRGVGGNASRNQRQQQHRGRD-PCDDTYDDEXXXXXXXXXXXXXXXXX-TGFDSDTMSVMDQDAIRASMRKRGARATAGAGGRRGDTVE-----QRARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGETVEGLTYQQTLECIK 166
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A835ZA47_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA47_9STRA) HSP 1 Score: 214 bits (544), Expect = 9.440e-60 Identity = 111/203 (54.68%), Postives = 144/203 (70.94%), Query Frame = 1
Query: 2158 MLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSI 2766
MLLER DEW G E+R ERA+V +VVD GPAQ GVTVGSKV VNGD+VEG+TY + L+ IK A RP+RV F RG +E NVG+ L+K G PRSY W+RRYFV+GGAVA+ +VLQ+Y SKQ++D +V+AVF+ + +RVKA KL + + PI+ K + G P PL+ F VK KQ+NFAS++L +L+ LR I
Sbjct: 1 MLLERKDEWVPGSEQRRERAVVSLVVDMGPAQGHGVTVGSKVLAVNGDSVEGMTYAEVLQAIKAAPRPMRVTFARGGGGEEANVGRCLYKTCAGAPRSYKVWKRRYFVIGGAVARPNVLQLYNSKQAFDHVVIAVFQRAPVTQRVKAVKLGSAWWTSPIRAKQYDGAP-PLHTFFVKKSGWHFKQMNFASESLPELERLREQI 202
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A7S3XPD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPD0_HETAK) HSP 1 Score: 200 bits (508), Expect = 4.650e-53 Identity = 106/221 (47.96%), Postives = 148/221 (66.97%), Query Frame = 1
Query: 2119 EYIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNV-GQILFKKTV-GVPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINERVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKF 2775
EY V F A KLGMLLER DEW G EKR E VKMVV+ A RGVTVGSK+ +NG TYQ+TLE +K RP+ V E + +++D G L+K +V G PR+Y W+RRY+V+GGAVA+ +VLQ+Y SK SY+++V+++F+ ++I +RVKA+KL+ FK IK K ++ TP+ +F +K PKSR+KQ+ FAS+N+ +Q L +F
Sbjct: 128 EYEVVFHEA-KLGMLLERRDEWKPGSEKRFETTTVKMVVEGQAAAARGVTVGSKILTINGQNCLRKTYQETLELVKTLPRPIFVVLEAPRDQEDDTTQGWCLYKSSVAGAPRAYEKWKRRYYVVGGAVARPNVLQIYESKTSYEQVVVSMFQQKKITQRVKAWKLTRKFKISGIKSKVYRTRATPVKYFALKSPKSRMKQICFASENMAGIQALYAHTKRF 347
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A6U0X2E0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X2E0_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.160e-42 Identity = 91/220 (41.36%), Postives = 140/220 (63.64%), Query Frame = 1
Query: 2122 YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISK 2772
Y V F KLGMLLER D+W + K ER +VKMVV+ G A++RGV VGSK+ +NG+ V G Y QTL+ +K RPLRV FE + + G+IL KK +G P + ++W+ ++V+GGAVA+ +VLQ+Y SK Y+ +V+ +F+++ + + KAY+L F+CGP+++K + G + L +F +K P+S+ K L AS+N + L ++K
Sbjct: 267 YDVTFPHETKLGMLLERIDQWDETENKSKERTLVKMVVEGGAAEVRGVVVGSKIYSLNGENVVGKPYNQTLDMVKMLPRPLRVTFEYAGNYHDMSQGEILLKKDIGYHPPSAITSWKPVFYVIGGAVARENVLQLYQSKSEYESVVVNLFQDKTVKDFNFKAYRLDLSFRCGPVQIKEYPGRKS-LSWFWIKNPQSKTKVLKVASENSSVITALHNQVAK 485
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A6S8UPM6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UPM6_9STRA) HSP 1 Score: 162 bits (410), Expect = 3.020e-39 Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1
Query: 2107 GDTVEYIVEFERARKLGMLLERHDEWPDG-----REKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKF 2775
G Y V F+R KLGMLLER + G ++ R E+ +V MV++ G A +GV VGS++ +NG L Y + LE +K+ RPL + FE+ + G +L KK+ G P S + WQR +FV+GGAVAK HVLQ+Y SK Y+ +V+ +F+ + + + KAY LS FKC I+ K +KG P+ +F ++ P SR K + FASQN + L + +F
Sbjct: 197 GSLPTYTVTFDREAKLGMLLERRAAFAPGATAAQKKARPEQTVVTMVIEGGAAAQKGVAVGSRLLLINGQDATALPYARCLELVKSLPRPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRF 427
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A8J2SCY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCY5_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.030e-37 Identity = 91/231 (39.39%), Postives = 133/231 (57.58%), Query Frame = 1
Query: 2107 GDTVEYIVEFERARKLGMLLERHDEWPDG-----REKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVGV--PRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFASQNLGDLQHLRTSISKF 2775
G Y V F+R KLGMLLER + G ++ R E+ +V MV++ G A +GV VGS++ +NG L Y + LE +K+ RPL + FE+ + G +L KK+ G P S + WQR +FV+GGAVAK HVLQ+Y SK Y+ +V+ +F+ + + + KAY LS FKC I+ K +KG P+ +F ++ P SR K + FASQN + L + +F
Sbjct: 424 GSLPTYTVTFDREAKLGMLLERRAAFAPGATAAQKKARPEQTVVTMVIEGGAAAQKGVAVGSRLLLINGQDATALPYARCLELVKSLPRPLHLVFEKSMAACDSAKGWVLVKKSAGSGPPSSMAGWQRMFFVVGGAVAKRHVLQLYSSKAQYEDIVVRMFQGQPLTGMKYKAYALSGTFKCSAIQSKVYKGEHQPVKYFALRNPYSRTKTMKFASQNPSIVAALHNHVMRF 654
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Match: A0A7S2DWQ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ1_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.890e-35 Identity = 88/205 (42.93%), Postives = 124/205 (60.49%), Query Frame = 1
Query: 2122 YIVEFERARKLGMLLERHDEWPDGREKRSERAIVKMVVDSGPAQIRGVTVGSKVKRVNGDTVEGLTYQQTLECIKNAARPLRVEFERGQLEQEDNVGQILFKKTVG--VPRSYSAWQRRYFVLGGAVAKVHVLQVYVSKQSYDRMVLAVFENRRINE-RVKAYKLSNLFKCGPIKVKSFKGHPTPLYFFTVKLPKSRLKQLNFAS 2727
Y++EF KLGMLLE+ +E K ER IVKMV+D G A RGV +GSK+ +VNG+ V G Y TL+ ++N RPL VEFE ++ + G + +K G P + W + YFV+GGAVAK HVLQ+Y SK Y+++V+ +F+N I R KAY L++ F+ I KS++ ++F T+K PKS+ K L S
Sbjct: 242 YVIEFPHESKLGMLLEKSEEVRGC--KVVERTIVKMVIDGGAADTRGVKLGSKIVKVNGNNVVGADYLTTLDQVRNLPRPLTVEFESVGHVEDTSQGYCIVRKAPGYKAPPALHMWNKAYFVIGGAVAKPHVLQIYDSKLEYEQVVVNMFQNTPIKGIRYKAYNLTSNFRVSGIHKKSYRLSKKNVHFVTLKNPKSKTKVLKIGS 444 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1397.2345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1397.2345.1 >prot_E-siliculosus-1a_F_contig1397.2345.1 ID=prot_E-siliculosus-1a_F_contig1397.2345.1|Name=mRNA_E-siliculosus-1a_F_contig1397.2345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=938bp MAQDPFQGWGRSQGGAGTVDPFGEFPFQMPTQQPQQQQQQQQQQQQPQRQback to top mRNA from alignment at E-siliculosus-1a_F_contig1397:19341..31007- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1397.2345.1 ID=mRNA_E-siliculosus-1a_F_contig1397.2345.1|Name=mRNA_E-siliculosus-1a_F_contig1397.2345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11667bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1397:19341..31007- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1397:19341..31007- >mRNA_E-siliculosus-1a_F_contig1397.2345.1 ID=mRNA_E-siliculosus-1a_F_contig1397.2345.1|Name=mRNA_E-siliculosus-1a_F_contig1397.2345.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5628bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1397:19341..31007- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |