mRNA_E-siliculosus-1a_F_contig1395.2337.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1395.2337.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1395.2337.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: D7G2Q9_ECTSI (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q9_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 3.410e-165
Identity = 247/265 (93.21%), Postives = 253/265 (95.47%), Query Frame = 2

Query:  269 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVILMEK 1063
            MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQ            +++ALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDE+RAALRVKGEQTVK+RTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLR+EAEVILMEK
Sbjct:    1 MAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQ------------VEAALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEVRAALRVKGEQTVKNRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRDEAEVILMEK 253

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A7S0VQZ5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VQZ5_9CRYP)

HSP 1 Score: 170 bits (431), Expect = 3.010e-45
Identity = 116/321 (36.14%), Postives = 172/321 (53.58%), Query Frame = 2

Query:  107 CVSLAIVAIACVVLPGDGF-VARSPAPLMRQASRHVSAGRSRLTTSAALGRRT--TMMAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVE-EGGTKMGHTVIMNWD--AKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEP-RAVVEFLRNEAEV 1048
            C++  ++     +   D F ++ +PA +  Q+   +S         AA+GR      M G     K   V L +Y G +VT+  P  E++EA             +   L+++ K Y+L   RF + EGG +MGHTV++N+   +   G  + G K   +ELE KEG  EPW+TFA+ +AVGMGQ E K F  TFP D+ +  L+GKQ   +  VK I +K  K+P+TR ++  RA    + E  ++    + VD+A++  L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+   AV EFLR+   V
Sbjct:   10 CIATGVLVFLVFLSSSDAFGISSAPARMFVQSRVGISHPPPLRAAHAAMGRSALGASMQGGSGGDKNAEVTLGQYTGLSVTL--PRAEVSEA------------AVAKILKENAKDYRLESARFTDGEGGARMGHTVLINFVGYSPETGAELKGTKANMYELELKEGQKEPWSTFASNIAVGMGQDEMKSFVVTFPGDYAVPALQGKQVRFETYVKKIMKKVAKDPDTRQEEVQRADAVAQLEAAIERNNLEKVDQALRLELMKTCAADTTKATEAVSWAKFGERSTLDLQWQIIKEAIGREEGIKDIGAVEEFLRDSNTV 316

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A4D9CVA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVA6_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.020e-42
Identity = 112/279 (40.14%), Postives = 152/279 (54.48%), Query Frame = 2

Query:  269 MAGDLDET--KGVTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV------------DGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAV-DEAVKKF---LLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVI 1051
            M G++  T  KG  V L  YK GA++   P   +++A+   Q +             +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P A  +NF LE KE   EP A+FA  +A GMGQMETKVF    PE   IE  RG  A +  +V++I  KE    + RS +E +AA+R +    ++++TD A   EA+  F   LL +     +K+  +VSWAKFGE S  DFKW+ I+E IA AEGI+   V  FL  E  V+
Sbjct:    1 MTGEMASTSAKGA-VTLGPYKNGALSFTYPKPTVSDAEVEAQVKTA-----------AKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGMGQMETKVFEVAMPESATIESWRGVTAKIMLLVRSINIKENLAADGRSIEEKQAAVRAE----LQAKTDAAARQEAIAHFRAILLETTQTETEKMQESVSWAKFGENSLKDFKWSLIQEAIAAAEGIDFSEVPSFLLRENPVV 263

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A7S1MV31_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MV31_HEMAN)

HSP 1 Score: 127 bits (319), Expect = 7.070e-31
Identity = 74/171 (43.27%), Postives = 99/171 (57.89%), Query Frame = 2

Query:  542 VPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRA-ALRVKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVE-FLRNEAEV 1048
            + G K   +ELE K  H EPW+TF   +AVGMGQ E K F  TFP+D+ +  L GKQ   +  VK I  +  KE + R + E RA A+        +S  DK VD+A+++ L+ +C  +  K   AVSWAKFGE+STLD +W  IKE I   EGI+    +E FLR +  V
Sbjct:    2 MKGTKANMYELELKGDHKEPWSTFTENIAVGMGQDEMKSFVVTFPDDYAVPALVGKQVRFETYVKKIMNRVAKEADARPEAEQRAEAIAALEASMERSNLDK-VDQAIRQELMKTCTADTTKATEAVSWAKFGEKSTLDLQWQIIKEAIGRKEGIKDIDAIENFLRQKNTV 171

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A388KP71_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KP71_CHABU)

HSP 1 Score: 129 bits (324), Expect = 3.570e-29
Identity = 83/256 (32.42%), Postives = 131/256 (51.17%), Query Frame = 2

Query:  299 VTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV-----DGRPVPGAKKENFELEFKEGHPEPWATFATKMA-VGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEV 1048
            V V L  YKGG + V+    E+T+ +             ++  +K +K ++   + F   G  K+GHTV +N++ K       G+ + G K + ++LE KE    PW  F  ++   GMGQ E+K F   FP DF+   LR  +A     VK I  K+    +TR + E R  ++ +     + +++  +D  ++  LL S   + DK+ + VSWAKFGE S  DFKWN + E++A  E I    V+ FLR EA++
Sbjct:  181 VKVVLGPYKGGVIKVKATKHEVTDEEVE-----------RAFKEKREKTHEFERINFTGSGA-KLGHTVKINFEGKYAEGPKSGQLIQGTKADMYDLELKERPDYPWKRFVEEITGTGMGQEESKTFMVVFPPDFKAPHLRNVKARFTVTVKAIGVKKELPKDTRPEHEQREEIKDELVAAEERKSNAQIDPEIRSALLESSEADVDKIASNVSWAKFGENSLKDFKWNLLMEEVARVENIAFEDVMPFLRREADI 424

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A7R9Y821_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y821_9VIRI)

HSP 1 Score: 124 bits (310), Expect = 1.090e-28
Identity = 87/262 (33.21%), Postives = 131/262 (50.00%), Query Frame = 2

Query:  299 VTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVD------GRPVPGAKKENFELEFKEGHPEPWATFATKMA-VGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALR----VKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVE-FLRNEAEV 1048
            V V L EYKGGA+ VR       EA    + +           ++  K ++L+ V F   G   MGHTV +   A         G+PVPG   ++  ++ K  +P P   F   +   GMGQME+K FP  FP+D++ E LRG   L   ++K IA K      T +D   RA LR     + ++  +  + K  D A++  LL  C V+  K + +V+WAKFGE+S  D+ ++ I E+I   EG+  +  ++ FLR EA +
Sbjct:    7 VDVKLCEYKGGALCVRADKSVADEAAVDAELE-----------EEMAKEFELVRVNFTGSGAA-MGHTVKLEMSATFGPGHQHAGQPVPGMTVDDLSVDLKTSNPFPLNHFVQAIVEAGMGQMESKTFPVAFPDDYQSERLRGVTCLFTIMIKEIAEKRPLPARTEAD---RATLREEIAARHDEQARRASAKRADLAIRNALLDGCEVDTQKTVESVAWAKFGEESIRDYAYSMILEEIGGREGLATQDDIKRFLREEASI 253

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A1Y1I108_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I108_KLENI)

HSP 1 Score: 125 bits (313), Expect = 3.050e-28
Identity = 86/257 (33.46%), Postives = 129/257 (50.19%), Query Frame = 2

Query:  299 VTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQ-KSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRP-----VPGAKKENFELEFKEGHPEPWATFATKMAV-GMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSRTDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEV 1048
            V + L  YK GA+ V     E++  +            ++ AL+ K  K Y    + F   G  K+GH V ++++ K    P     + G K + FELE +    +PW TF  ++   GMGQ E+K F  TFP D++   LR   A     V  I  K++ E + R +  IRA +      T + +T+  +D+ V++ LL +   + DKV  +VSWAKFGE+S  DFKWN + E++A  E IE      FLR +A V
Sbjct:  102 VKIALGPYKDGAIKVSAKKFEVSNDE------------IEKALKAKLGKTYDFERINFTGSGA-KIGHMVKVSFEGKYSDGPNAGQLIRGTKADFFELELQPREDDPWKTFVEQIVKNGMGQEESKSFTLTFPADYKAVPLRNVAARFTVTVHEIGIKKMLEKDPRPEAAIRADIEADLRATAERKTNDLIDQEVRRVLLETSEADVDKVAASVSWAKFGEKSLQDFKWNLLLEEVARNEKIEFEEAKAFLRRQATV 345

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A4D9DGH6_9STRA (ABC transporter domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGH6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.830e-11
Identity = 52/137 (37.96%), Postives = 70/137 (51.09%), Query Frame = 2

Query:  269 MAGDLDET--KGVTVDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKV------------DGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGM 637
            M G++  T  KG  V L  YK GA++   P   +++A+   Q +             +KK +KL PVRFVEEGGT+MGHTV+ +W A               G  +P A  +NF LE KE   EP A+FA  +A GM
Sbjct:   61 MTGEMASTSAKGA-VTLGPYKNGALSFTYPKPTVSDAEVEAQVKTA-----------AKKTFKLTPVRFVEEGGTRMGHTVVCDWKATYVSGGDPAKHSLRPGAVLPRADIKNFVLELKEDQSEPLASFARAVASGM 185

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: D5WUL5_KYRT2 (Trigger factor n=6 Tax=Kyrpidia TaxID=1129704 RepID=D5WUL5_KYRT2)

HSP 1 Score: 63.9 bits (154), Expect = 2.970e-7
Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 2

Query:  305 VDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIM-NWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFAT---KMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQAVVKNIARKEVKE---------PETRSDDEIRAALRVKGEQTVKS--RT-------DKAVDEAV 862
            V+L  YKG  VTV      +TE              +   L+  ++ +  I V  V EGG      ++M +++  VDG P+ G + E+++LE   G      TF     +  +GM Q E +    TFP+D+ +EGLRGK+AL +  + +I RK + E          E  + +E+RA L+ K EQ  +   RT       DK V+EAV
Sbjct:  118 VELGTYKG--VTVEDKEFPVTEED------------VDKELENLRRQHAQIEV--VGEGGRVQNEDLVMIDFEGFVDGEPLEGGQGEDYQLEIGSG------TFVRGFEEQLIGMTQGEDREIRVTFPDDYHVEGLRGKEALFKVHLHDIKRKRLPELDDEFAKDISEFETLEELRADLKNKLEQRAEQDHRTYLENQVVDKVVEEAV 303

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BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Match: A0A088T2G1_9BACT (Trigger factor n=1 Tax=Candidatus Izimaplasma sp. HR1 TaxID=1541959 RepID=A0A088T2G1_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 5.190e-7
Identity = 75/285 (26.32%), Postives = 127/285 (44.56%), Query Frame = 2

Query:  305 VDLAEYKGGAVTVRVPLIEITEAQARTQEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDGRPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDFEIEGLRGKQALVQA-----------VVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKS-----RTDKAVDEAVK--------KFLLSSCNVNADKV--------LNAVSWAKFGEQSTLDFKWNCIKEKIAVAEGIEPRAVVEFLRNEAEVILMEK 1063
            V L EYKG  +++     E+ E Q  T+        +Q  L+++ +      +   EEG  + G T I ++D  VDG P  G K EN+EL    G   P   F  +M +GM   E K    +FPE+++ E L+GK A+ +            V+ +   K++++ +  + +E++A    K E++V++     R D AV EA K        + +    N   D V        L   ++ +F   +  DF+ N +K+    A  I    VVE +  + E+   E+
Sbjct:  117 VTLGEYKG--LSMPKQSTEVKEEQIETE--------LQKLLEQNAE------LVLKEEGTLENGDTAIFDFDGYVDGEPFEGGKSENYELAIGSGQFIPG--FEEQM-IGMALGEEKDLNVSFPEEYQAENLKGKDAIFKVKLHEMKVRELPVMSDEFVKDLEKEDINTVEELKADTVKKLEESVEAQNKSARVDFAVSEATKNASYELPEEMIEEEKNRLVDNVKQQAKQYNLELDTYLQFSGVTKEDFEANLLKD---AARSISYNLVVEAIGKQEEITATEE 379

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1395.2337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2Q9_ECTSI	3.410e-165	93.21	FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ...	[more]
A0A7S0VQZ5_9CRYP	3.010e-45	36.14	Hypothetical protein n=1 Tax=Hemiselmis tepida Tax...	[more]
A0A4D9CVA6_9STRA	2.020e-42	40.14	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A7S1MV31_HEMAN	7.070e-31	43.27	Hypothetical protein n=1 Tax=Hemiselmis andersenii...	[more]
A0A388KP71_CHABU	3.570e-29	32.42	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]
A0A7R9Y821_9VIRI	1.090e-28	33.21	Hypothetical protein n=1 Tax=Prasinoderma colonial...	[more]
A0A1Y1I108_KLENI	3.050e-28	33.46	Uncharacterized protein n=1 Tax=Klebsormidium nite...	[more]
A0A4D9DGH6_9STRA	8.830e-11	37.96	ABC transporter domain-containing protein n=1 Tax=...	[more]
D5WUL5_KYRT2	2.970e-7	31.25	Trigger factor n=6 Tax=Kyrpidia TaxID=1129704 RepI...	[more]
A0A088T2G1_9BACT	5.190e-7	26.32	Trigger factor n=1 Tax=Candidatus Izimaplasma sp. ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1395	contig	E-siliculosus-1a_F_contig1395:18829..24219 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	981
Model size	1490
Exons	9
Ec32 ortholog	Ec-11_003150.1
Ec32 ortholog description	Secreted hypothetical protein
Hectar predicted targeting category	signal peptide
BRITE	ko00000
Best eggNOG OG	NA\|NA\|NA
Best tax level	Alicyclobacillaceae
COG Functional cat.	D
EggNOG OGs	1TQQ8@1239,277WA@186823,4H9Q8@91061,COG0544@1,COG0544@2
EggNOG free text desc.	Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
KEGG ko	ko:K03545
Preferred name	tig
Seed eggNOG ortholog	1356854.N007_04035
Seed ortholog evalue	2.6e-10
Seed ortholog score	73.2
Taxonomic scope	Bacteria

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927907.216714-UTR-E-siliculosus-1a_F_contig1395:18828..19252	1622927907.216714-UTR-E-siliculosus-1a_F_contig1395:18828..19252	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1395 18829..19252 -
1696318732.2998514-UTR-E-siliculosus-1a_F_contig1395:18828..19252	1696318732.2998514-UTR-E-siliculosus-1a_F_contig1395:18828..19252	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1395 18829..19252 -
1622927907.9296422-UTR-E-siliculosus-1a_F_contig1395:24134..24219	1622927907.9296422-UTR-E-siliculosus-1a_F_contig1395:24134..24219	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1395 24135..24219 -
1696318732.3953233-UTR-E-siliculosus-1a_F_contig1395:24134..24219	1696318732.3953233-UTR-E-siliculosus-1a_F_contig1395:24134..24219	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1395 24135..24219 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1395.2337.1	prot_E-siliculosus-1a_F_contig1395.2337.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1395 19253..24134 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1395:18829..24219-
coding sequence from alignment at E-siliculosus-1a_F_contig1395:18829..24219-

protein sequence of mRNA_E-siliculosus-1a_F_contig1395.2337.1

>prot_E-siliculosus-1a_F_contig1395.2337.1 ID=prot_E-siliculosus-1a_F_contig1395.2337.1|Name=mRNA_E-siliculosus-1a_F_contig1395.2337.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=327bp
MMSSACSCVSLAIVAIACVVLPGDGFVARSPAPLMRQASRHVSAGRSRLT
TSAALGRRTTMMAGDLDETKGVTVDLAEYKGGAVTVRVPLIEITEAQART
QEQAPRTTMMQSALQKSKKPYKLIPVRFVEEGGTKMGHTVIMNWDAKVDG
RPVPGAKKENFELEFKEGHPEPWATFATKMAVGMGQMETKVFPATFPEDF
EIEGLRGKQALVQAVVKNIARKEVKEPETRSDDEIRAALRVKGEQTVKSR
TDKAVDEAVKKFLLSSCNVNADKVLNAVSWAKFGEQSTLDFKWNCIKEKI
AVAEGIEPRAVVEFLRNEAEVILMEK*

mRNA from alignment at E-siliculosus-1a_F_contig1395:18829..24219-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1395.2337.1 ID=mRNA_E-siliculosus-1a_F_contig1395.2337.1|Name=mRNA_E-siliculosus-1a_F_contig1395.2337.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5391bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1395:18829..24219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGACTCGAGCCCAGAGTCTAAAGACGGAGGCAGAGGATAGACTGAAAAC
TTACGTAGCTCACGGGACACACTGGAGCTCACGATATGATGTCTTCAGCC
TGCTCGTGTGTTTCGTTGGCGATCGTAGCGATAGCATGCGTCGTCTTGCC
CGGCGATGGCTTTGTTGCGAGATCGCCAGCACCGCTCATGAGGCAAGCCT
CCCGGCACGTGTCAGCCGGGCGAAGTAGATTAACGACATCCGCCGCATTG
GGCCGAAGAACGACGATGATGGCTGGCGATCTCGATGTGAGTCTTCTTCT
ACCTCTGCGTGGATTGTGAGGATATTGGCGGCAGCCCGGTTTATGTCGTG
ATACCGCTGTATCCATCTTGCAGGTTTGGCTTCGGTTGGGGCTTTGCAGT
GAAGACACAGCAGCGGCCCTGGGTGCTGGTACACCACCTACTACTTTACG
CTGCCAATGGACGAGCGAATCCCCTAGCCGACTATCTAGCTCAACACGAA
TGAGACTCCACAAAACACTGCTGTTGTGCGCATCTCATTAAACCATGGCT
ACGCTGTGTCCAACGCCACGTCGTCAAGCACAGCGATATTGCATGCTACA
CTGCTGTTACCGACCAAGCAGGATACATGTATAGTGGTTTGAAGAGTGGT
TGTTGCAGGCCGGCCGTTGTCGTTAACCTCGCTTCCGGCAACCACTGCTC
AACACTTCCGTATGCACGATCTCTCTGCTGCCACTGCCAGGAAACGAAAG
GAGTCACCGTAGACCTAGCGGAGTACAAGGGTGGGGCGGTTACCGTGCGG
GTCCCGCTCATCGAGATCACCGAAGCGCAGGCAAGAACACAAGAACAGGC
GCCGCGCACGACGATGATGCAATGTTTCCCTCCTTGTTGCCCACACTACT
TCTCGTTAGAAGCAGGCCGAAGACTAGACTGTTGGTGCTGCTGCACGTGC
TATGCACCGCAGGCAGAGTTTATCTCCCGTGAAACGATGGGTGTGTAAGG
ATTCGTATAGACAAATCTAAGCGACTTTTCTTCATGCCCATACGTCGCAC
CTATGTATACGCTTTCGTCTTCCGTATTCTGAGTATGCGTTTGCTCTTCC
GACGGGGTACGGTGTGGGTGTACATGTACTCCATAGTCTCATCTCGGTAT
GATTGCGGACTTTCCAATGATTGTCAGCTTCGTACTGCTAGTTCTCGCAT
GCTACACTGACGGTATGTGACTGTGGTGTGTCGGCCCTTCCCACCACGCA
GGTGGAAGCGGCCTTGCAGAAGTCGAAAAAGCCGTACAAGCTTATTCCGG
TCCGATTCGTCGAGGAGGGGGGAACAAAGATGGGCCACACGGTCATCATG
AACTGGGACGCCAAGGTGCAACGGTTATTGCTATCTTGAAGTAATAAATC
CTCGCATGTTAAATATATGGTGGTACACGTAGGGGGGTGCTCACACCAGC
ACGGCCGATGTGCCGTGTGTTTTTCTTATTAGTGCCGAAGCTTGGATACA
AAGTTAAAGTTTACAAGCTGAGAGCAGCCAGTTGCAACACGCATCTCGAC
GCCGCTTAACACAGCCGTGAGCACTTAGTGGGAATCCTGAACGGTTGGTC
GAGAAGAGCTTGTTTTGCCCACGAACGGTTTGTAGGCGTCCATAAACACA
AGCCTGTCCCTCCCCCCTCCCCCGACCCCGCTCCGTTGCTCCTACTGCTT
TGCATTTTATCATTATTTCCCGGCCTTCGGACGTGCCACCCGCCTTATTG
CTCTTCCCAACATCTTCTTGTGTTCCCAAAAATCTTTCCTTTGTTTCTCG
GCGGCTTGTTTGCATGTCTTTTTTCGCGGTGGCGTCGACGTGAACCATCT
GGTTGCCTAAGGTCGACGGCCGGCCCGTCCCTGGCGCTAAGAAGGAGAAC
TTCGAACTAGAATTCAAGGTGAGAGGGTGATCACCACGACGAGATTTTGT
CTGCACTGCTAATATAGTGTGCGAGTTCGTGTAATCCATCCTATCCTACG
CATGTACGACTTGGCGCGGTGTGTCCGCGCAGACCTTATCGGGACAAAAC
ACAACAGCTGGAAAGGTTCATGTGCCCACGTGTGTGGGTGTACCGTGCAC
CAAATAATCCCGAACGCAACACATACACGTGATACCGCCGCGCGTTCGAT
GTCAGGCAGCTGTCACCATGCCTCTAACGGTGGCACTATTTAAATGTATC
AAGGCCACAGCGTTCTAAATGAACGAAGATGTAGCACACAACACGCGAAA
ACGACGTGTTTTTGGCCTGGTTGTGGCCGTGTCGCGCTCGGATCGTGTTG
TCTCCGCGGCGTGACGGAAAAAAAACAGGAGGGACACCCCGAGCCGTGGG
CAACTTTTGCTACGAAAATGGCCGTCGGGATGGGACAGATGGAGACCAAG
GTCTTCCCGGCAACCTTCCCGGAAGACTTCGAGGTACGGACAAACGAGAC
AGGATTGATAACCATGGCGGTGTTCTTGCGACCGAAGCAATTCTGACGGA
AAGTCGTCCTAAAAGGGAACCGTTTTTTGTTGGTTGCTGGTGGGTAGGCA
CTGGTTCAGTATGGAGTCTTAGCACTGCTGTGTCGTAAATACAGGTACCT
GATACACCACAAGACACCACTGGTGCTTTTCGACATGCCACAAGAGCCAC
TGCTTCCTCCACCTTGCTTTAGTCACTTCTTTGAGCAGGACACGTGCGAC
CTGCAGCTCTGGATGCGCTGTATCGGTATGAACGCGTGCTTGCCCGCGTT
CCAAATGTTTGTGTATGTGCGTCGTTCGTTATTGGCCCGCCATGGAGTTT
CACGTCGCCACAGATATCGTGCGTCGTGTTGTTACCATTGCACATGTAGC
TGTAGATATCTACTGTTGAGACTGAAAGTTGCTTGTAATCTTCACATCTC
AGATGTTGCGGTCTTTTCTTCCGGTACATATCTGGTCCGCCAAAATAACC
CGAGCAAGCGTGTATTCTTTCGTATGCGACAAATCCTCTTGCTCTGTGTC
GCTCGCGTGGAGAGAAGATCGAGGGCTTGAGGGGCAAGCAGGCGCTAGTC
CAGGCTGTGGTGAAGAACATCGCCAGGAAGGAGGTCAAGGTACGTTAACA
ATATCAAAACACATGTACGTACACGTGATTGTTTGTTTTCCCCTTTGGAA
GAACAGGGCTTGCTACTAGTAGAACCCCGTTCTTTTTTTTCGGTGGAGTG
ACTGCACAGCCGGGTGCCCGAGGTGACCACAAAATGAGGGGTTGCAGCGG
AGAGCCTCGCCCCCATTTACGTATATCTGTGGCATGTTTTCCCTCAGATC
TTTGTAGATGCTCCAACGTGCGGATTCCCTTCTTCAAAACATGCAAAAGC
GAGGCCAAAGTGAACATGCAACAGAGTTAAGGTTTTTCCCCACGATCAAG
ACACCTCTTGCACCCATTCACCGAAAACGAAGGAGCCCGAGACCAGGAGC
GACGACGAGATCAGGGCCGCTCTCCGGGTCAAGGGAGAGCAGACCGTAAA
GGTGAGCCAGCGGGCAAACATGATGGAACGATTTTTGCCTTGGCTTGCTC
GTTTTCAACCGGCAGCGTGCATGGTTGTGCGCACCGGCTTCATGGCAGTT
GAATGGGCGGACATTTTTTCGCAAGGGTGGGTGGGAAAACCCGATGCTGT
ACCGATGGTCAAGTGCAAGCAGTTCGAGCACCGGCCGGGAGAAACACGTA
CTGCATGTGATCGTGAAGCCGGCGGTGGGGTATGGCAGTACCAGTGAGAC
CCAACCCACAGATCTAATCTCAGGCGGGTTTGCTCGGACCAAAGTGACTG
AAGAGATATTTTTGATTCTAGTCTATGCCGGCGTCGTCGGTATAGACCTT
TAGCACGAAAACCATCCGGGTCCCCTCGAACGACTGTCGGTATGCAAGGT
GGTGGCCTCGGTATTTTGTCGCATCGAATGTGAGTTGGAGCATCAGGAAT
TGGTCCCGCCGTGCCTTCCGGGAGTCACACCGATGGTCGCCACTGTTGTG
TAGCACCATGCCAATCCATAGAATCAATTTAGTGGTGTCCAAAGGCAATG
ATGGGCATAGCGGCACGCTCGCGCGTCAGGACTCTCATGGCACTGTTGTC
TCGTAGAAGAGCGGGACACGGCATTTCTTGGTTTAGATTGTTCGTTGCTG
GTATGTATCAGACACCCAGCCCATCGTCAACCCCCCCCCCGGCCACTCGC
TGAACATCAACTATCATTTTCTGCCGATCCCGCATGTACGACATGAAATG
GCGTGACAATAACTCTTGCTCTCTGGTAATACTGTATGTTCCCTTTGGTT
TCTGAAACTGTCGACAACAGAGCCGCACCGACAAGGCCGTCGACGAGGCT
GTGAAGAAGTTCCTCCTGAGTTCTTGCAACGTCAACGCCGATAAGGTATC
TTCGTGCTTTATCTATGCTTTGGTTTGGATTGGCAAACGGCGTGTTTGAT
TCCTTAGCAACGAGCACGCGCGTGAGCAGGGCCGCAAGTAGGGCAGTAGG
TGATGTTGGGTTTTCGTCTGCTTTTTATGCGTTTGGGATGAACCTCAGAC
CCCATTTCGTTCACCCAGACGCATCGTTGGCGTTTTGCTTGTTGTACATA
GGCACCGTGTGATCGCCAAGGCTTGCCCAACAGTCCGACTGCTGCACACA
TGCGAGAAAAACGTGTTGAGTCTTTCAACGGACCCTTGAGGCATATGCCG
AAAGTATGAAGTAATGCATATATAAATATTAGAGAGCTGTACAATATGTA
ACACCAGCCGACCCCCCACCCCTACCCCCCCGAATTCGGGATGCCCCTGT
CGCAGGTCTTGAACGCTGTGTCGTGGGCGAAGTTCGGGGAGCAATCGACA
CTAGACTTCAAGTGGAACTGCATCAAGGAGAAGATCGCCGTTGCCGAGGG
CATCGAGCCTCGCGCGGTGGTGGAGTTCCTGCGAAATGAAGCCGAAGTGA
TTCTCATGGAGAAGTGAACCATCCACTTTTTCAAACGATATACAGGATCG
TATTGCGTGCCGCTTTCTCTTCGCTACTATTCTCGGAATTGGAGCCCCCC
GTTTTGTGCACTGCAAAGGCCTCCTGTGTCACCCACGAGGATGCTTCGTT
CTGGTATTCTCCAAAACGGCTTGTTACTTGAGATGGCATCGTTTTGGCAC
CCGGCGAACACCTCGTTGGCGGGGGGGGTGTTGCTATGGATTCGTTAGTA
CGCGTAGACCCTGTACGGTTTAGAACGACATGACACGCGGCGTTGTAGAG
TTGTCGAGAGGTCTCAGTCACCTTCCACCGAGGAGGACAATTTTGAGTGT
TTGGACCGAGCCCTAGCTGATCCAGCTGGGATTTTGATCTGTGTGTTCTC
GGTACTTGTACTTGGTAGAAGAAGAAGAAGAGCAGATGGAC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1395:18829..24219-

>mRNA_E-siliculosus-1a_F_contig1395.2337.1 ID=mRNA_E-siliculosus-1a_F_contig1395.2337.1|Name=mRNA_E-siliculosus-1a_F_contig1395.2337.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1962bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1395:18829..24219- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGTCTTCAGCCTGCTCGTGTGTTTCGTTGGCGATCGTAGCGATAGC
ATGCGTCGTCTTGCCCGGCGATGGCTTTGTTGCGAGATCGCCAGCACCGC
TCATGAGGCAAGCCTCCCGGCACGTGTCAGCCGGGCGAAGTAGATTAACG
ACATCCGCCGCATTGGGCCGAAGAACGACGATGATGGCTGGCGATCTCGA
TATGATGTCTTCAGCCTGCTCGTGTGTTTCGTTGGCGATCGTAGCGATAG
CATGCGTCGTCTTGCCCGGCGATGGCTTTGTTGCGAGATCGCCAGCACCG
CTCATGAGGCAAGCCTCCCGGCACGTGTCAGCCGGGCGAAGTAGATTAAC
GACATCCGCCGCATTGGGCCGAAGAACGACGATGATGGCTGGCGATCTCG
ATGAAACGAAAGGAGTCACCGTAGACCTAGCGGAGTACAAGGGTGGGGCG
GTTACCGTGCGGGTCCCGCTCATCGAGATCACCGAAGCGCAGGCAAGAAC
ACAAGAACAGGCGCCGCGCACGACGATGATGCAATGAAACGAAAGGAGTC
ACCGTAGACCTAGCGGAGTACAAGGGTGGGGCGGTTACCGTGCGGGTCCC
GCTCATCGAGATCACCGAAGCGCAGGCAAGAACACAAGAACAGGCGCCGC
GCACGACGATGATGCAATCGGCCTTGCAGAAGTCGAAAAAGCCGTACAAG
CTTATTCCGGTCCGATTCGTCGAGGAGGGGGGAACAAAGATGGGCCACAC
GGTCATCATGAACTGGGACGCCAAGCGGCCTTGCAGAAGTCGAAAAAGCC
GTACAAGCTTATTCCGGTCCGATTCGTCGAGGAGGGGGGAACAAAGATGG
GCCACACGGTCATCATGAACTGGGACGCCAAGGTCGACGGCCGGCCCGTC
CCTGGCGCTAAGAAGGAGAACTTCGAACTAGAATTCAAGGTCGACGGCCG
GCCCGTCCCTGGCGCTAAGAAGGAGAACTTCGAACTAGAATTCAAGGAGG
GACACCCCGAGCCGTGGGCAACTTTTGCTACGAAAATGGCCGTCGGGATG
GGACAGATGGAGACCAAGGTCTTCCCGGCAACCTTCCCGGAAGACTTCGA
GGAGGGACACCCCGAGCCGTGGGCAACTTTTGCTACGAAAATGGCCGTCG
GGATGGGACAGATGGAGACCAAGGTCTTCCCGGCAACCTTCCCGGAAGAC
TTCGAGATCGAGGGCTTGAGGGGCAAGCAGGCGCTAGTCCAGGCTGTGGT
GAAGAACATCGCCAGGAAGGAGGTCAAGATCGAGGGCTTGAGGGGCAAGC
AGGCGCTAGTCCAGGCTGTGGTGAAGAACATCGCCAGGAAGGAGGTCAAG
GAGCCCGAGACCAGGAGCGACGACGAGATCAGGGCCGCTCTCCGGGTCAA
GGGAGAGCAGACCGTAAAGGAGCCCGAGACCAGGAGCGACGACGAGATCA
GGGCCGCTCTCCGGGTCAAGGGAGAGCAGACCGTAAAGAGCCGCACCGAC
AAGGCCGTCGACGAGGCTGTGAAGAAGTTCCTCCTGAGTTCTTGCAACGT
CAACGCCGATAAGAGCCGCACCGACAAGGCCGTCGACGAGGCTGTGAAGA
AGTTCCTCCTGAGTTCTTGCAACGTCAACGCCGATAAGGTCTTGAACGCT
GTGTCGTGGGCGAAGTTCGGGGAGCAATCGACACTAGACTTCAAGTGGAA
CTGCATCAAGGAGAAGATCGCCGTTGCCGAGGGCATCGAGCCTCGCGCGG
TGGTGGAGTTCCTGCGAAATGAAGCCGAAGTGATTCTCATGGAGAAGTGA
GTCTTGAACGCTGTGTCGTGGGCGAAGTTCGGGGAGCAATCGACACTAGA
CTTCAAGTGGAACTGCATCAAGGAGAAGATCGCCGTTGCCGAGGGCATCG
AGCCTCGCGCGGTGGTGGAGTTCCTGCGAAATGAAGCCGAAGTGATTCTC
ATGGAGAAGTGA