mRNA_E-siliculosus-1a_F_contig1394.2332.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1394.2332.1
Unique NamemRNA_E-siliculosus-1a_F_contig1394.2332.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 2.530e-62
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = -1 
Query:    7 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQVWRGDGPVATVVAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 333
            SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQVWRGDGPVATVVAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG
Sbjct: 1528 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQVWRGDGPVATVVAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 1636
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.050e-58
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = -1 
Query:    7 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTTNAAAVSGAWGKKPQVWRGDGPVATVVAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 333
            SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSG SNS TT A+AVSGAWGKKPQVWRGDGPVATV APPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG
Sbjct: 2060 SAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGGSNSCTTTASAVSGAWGKKPQVWRGDGPVATVAAPPAPPATAAAEKEPSHRVEASLRALFRELSEVDGG 2168
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A7S3UU50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU50_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 4.740e-9
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -1 
Query:  226 PRGLVNATGQNNCFLNVVVQSLWHLEAFRAQF 321
            PRGL N TGQNNCFLNVVVQSLWHL+AFR  F
Sbjct:  270 PRGLTNETGQNNCFLNVVVQSLWHLDAFREPF 301
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: L8GH96_ACACA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GH96_ACACA)

HSP 1 Score: 62.4 bits (150), Expect = 7.710e-9
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = -1 
Query:  193 VPSPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSNSGTT 345
            VPSP+  + +GL+N  G+NNCFLNVV+QSLWHL++FR +F G+ + +  +T
Sbjct:   15 VPSPNTNL-KGLINPLGENNCFLNVVIQSLWHLDSFRTRFEGTEEKHQHST 64
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A7R8UZA6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UZA6_HERIL)

HSP 1 Score: 57.8 bits (138), Expect = 1.740e-8
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = -1 
Query:  226 SPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQF 339
            SP  P  +GL+NA GQNNCFLN  VQ LWHL+AFR  F
Sbjct:   30 SPVEPSSKGLLNAPGQNNCFLNCAVQVLWHLDAFRRSF 67
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A7S3C552_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C552_9VIRI)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-7
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = -1 
Query:  229 PSPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQ 342
            PSP+     GL NATG+ NCFLNVVVQSLWHL  FR Q
Sbjct:   16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQ 53
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A7S3FJS1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FJS1_9VIRI)

HSP 1 Score: 56.2 bits (134), Expect = 9.800e-7
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = -1 
Query:  229 PSPSAPMPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQ 342
            PSP+     GL NATG+ NCFLNVVVQSLWHL  FR Q
Sbjct:   16 PSPAVRGTTGLANATGEYNCFLNVVVQSLWHLPPFRQQ 53
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A7S4GGM6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GGM6_9EUGL)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = -1 
Query:  220 RGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGG 318
            +G+VNA G+NNCFLNVV+QSLWH  AFR  F G
Sbjct:    7 KGIVNALGENNCFLNVVIQSLWHTSAFREAFKG 39
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A2P6NRT8_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRT8_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.070e-6
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = -1 
Query:  226 MPRGLVNATGQNNCFLNVVVQSLWHLEAFRAQF 324
            M +GL N +GQNNCFLNV++QSLWHL  FR  F
Sbjct:  232 MDKGLTNKSGQNNCFLNVIIQSLWHLRTFRRSF 264
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BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Match: A0A2P6N077_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N077_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = -1 
Query:  205 RGLVNATGQNNCFLNVVVQSLWHLEAFRAQFGGSGDSN 318
            +GL+N+ G+ NCF+N V+Q+LWHLE+FR  FG   D N
Sbjct:  372 KGLINSKGEQNCFINSVIQALWHLESFRKAFGSCADHN 409
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1394.2332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW9_ECTSI2.530e-62100.00USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE2.050e-5895.41USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UU50_HETAK4.740e-984.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8GH96_ACACA7.710e-952.94Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Acan... [more]
A0A7R8UZA6_HERIL1.740e-865.79Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A7S3C552_9VIRI3.450e-768.42Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S3FJS1_9VIRI9.800e-768.42Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S4GGM6_9EUGL1.020e-669.70Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A2P6NRT8_9EUKA1.070e-666.67USP domain-containing protein n=1 Tax=Planoprotost... [more]
A0A2P6N077_9EUKA1.560e-655.26USP domain-containing protein n=1 Tax=Planoprotost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1394contigE-siliculosus-1a_F_contig1394:4840..5208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size369
Model size370
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927906.1144576-CDS-E-siliculosus-1a_F_contig1394:4839..52081622927906.1144576-CDS-E-siliculosus-1a_F_contig1394:4839..5208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 4840..5208 +
1696318731.8866963-CDS-E-siliculosus-1a_F_contig1394:4839..52081696318731.8866963-CDS-E-siliculosus-1a_F_contig1394:4839..5208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1394 4840..5208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1394.2332.1prot_E-siliculosus-1a_F_contig1394.2332.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1394 4840..5208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1394.2332.1

>prot_E-siliculosus-1a_F_contig1394.2332.1 ID=prot_E-siliculosus-1a_F_contig1394.2332.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=123bp
AAAAVDLGELSEQRSERRLDAMARLLLRSRRCRWCGRRYYRCDWAVAPPD
LRLLSPSAAYRRRVGGAAIAVPAPPELRPERFEVPQRLDDDVQEAVVLPG
RVNEPPGHRRGGRRDVLLRRLPR
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mRNA from alignment at E-siliculosus-1a_F_contig1394:4840..5208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1394.2332.1 ID=mRNA_E-siliculosus-1a_F_contig1394.2332.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=369bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1394:4840..5208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCCGCCGCCGTCGACCTCGGAGAGCTCTCGGAACAACGCTCGGAGAG
ACGCCTCGACGCGATGGCTCGGCTCCTTCTCCGCAGCCGCCGTTGCCGGT
GGTGCGGGCGGCGCTACTACCGTTGCGACTGGGCCGTCGCCCCTCCAGAC
CTGCGGCTTCTTTCCCCAAGCGCCGCTTACCGCCGCCGCGTTGGTGGTGC
CGCTATTGCTGTCCCCGCTCCCCCCGAACTGCGCCCGGAACGCTTCGAGG
TGCCACAGAGACTGGACGACGACGTTCAAGAAGCAGTTGTTCTGCCCGGT
CGCGTTAACGAGCCCCCTGGGCATCGGCGCGGAGGGCGAAGGGACGTCCT
TCTTCGCCGCCTCCCCCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1394:4840..5208+

>mRNA_E-siliculosus-1a_F_contig1394.2332.1 ID=mRNA_E-siliculosus-1a_F_contig1394.2332.1|Name=mRNA_E-siliculosus-1a_F_contig1394.2332.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1394:4840..5208+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGCCGCCGCCGTCGACCTCGGAGAGCTCTCGGAACAACGCTCGGAGAG
ACGCCTCGACGCGATGGCTCGGCTCCTTCTCCGCAGCCGCCGTTGCCGGT
GGTGCGGGCGGCGCTACTACCGTTGCGACTGGGCCGTCGCCCCTCCAGAC
CTGCGGCTTCTTTCCCCAAGCGCCGCTTACCGCCGCCGCGTTGGTGGTGC
CGCTATTGCTGTCCCCGCTCCCCCCGAACTGCGCCCGGAACGCTTCGAGG
TGCCACAGAGACTGGACGACGACGTTCAAGAAGCAGTTGTTCTGCCCGGT
CGCGTTAACGAGCCCCCTGGGCATCGGCGCGGAGGGCGAAGGGACGTCCT
TCTTCGCCGCCTCCCCCGGGCCGCCGCCGCCGTCGACCTCGGAGAGCTCT
CGGAACAACGCTCGGAGAGACGCCTCGACGCGATGGCTCGGCTCCTTCTC
CGCAGCCGCCGTTGCCGGTGGTGCGGGCGGCGCTACTACCGTTGCGACTG
GGCCGTCGCCCCTCCAGACCTGCGGCTTCTTTCCCCAAGCGCCGCTTACC
GCCGCCGCGTTGGTGGTGCCGCTATTGCTGTCCCCGCTCCCCCCGAACTG
CGCCCGGAACGCTTCGAGGTGCCACAGAGACTGGACGACGACGTTCAAGA
AGCAGTTGTTCTGCCCGGTCGCGTTAACGAGCCCCCTGGGCATCGGCGCG
GAGGGCGAAGGGACGTCCTTCTTCGCCGCCTCCCCCGG
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