mRNA_E-siliculosus-1a_F_contig13938.2329.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13938.2329.1
Unique NamemRNA_E-siliculosus-1a_F_contig13938.2329.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13938.2329.1 vs. uniprot
Match: D7FRZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ8_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1 
Query:   97 GLLQTLPNDFTPHEKEASLWSG 162
            GLLQTLP DFTPHEKEASLWSG
Sbjct:   58 GLLQTLPGDFTPHEKEASLWSG 79
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BLAST of mRNA_E-siliculosus-1a_F_contig13938.2329.1 vs. uniprot
Match: D7G040_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G040_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 2.250e-5
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1 
Query:   97 GLLQTLPNDFTPHEKEASLWSG 162
            GLLQTLP DFTPHEKEASLWSG
Sbjct:   58 GLLQTLPGDFTPHEKEASLWSG 79
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13938.2329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRZ8_ECTSI2.180e-595.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G040_ECTSI2.250e-595.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13938contigE-siliculosus-1a_F_contig13938:1..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size162
Model size162
Exons2
Ec32 orthologEc-12_007220.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.9862618-CDS-E-siliculosus-1a_F_contig13938:0..651622927905.9862618-CDS-E-siliculosus-1a_F_contig13938:0..65Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13938 1..65 -
1696318731.8546827-CDS-E-siliculosus-1a_F_contig13938:0..651696318731.8546827-CDS-E-siliculosus-1a_F_contig13938:0..65Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13938 1..65 -
1622927906.004608-CDS-E-siliculosus-1a_F_contig13938:746..8431622927906.004608-CDS-E-siliculosus-1a_F_contig13938:746..843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13938 747..843 -
1696318731.8634534-CDS-E-siliculosus-1a_F_contig13938:746..8431696318731.8634534-CDS-E-siliculosus-1a_F_contig13938:746..843Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13938 747..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13938.2329.1prot_E-siliculosus-1a_F_contig13938.2329.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13938 1..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13938.2329.1

>prot_E-siliculosus-1a_F_contig13938.2329.1 ID=prot_E-siliculosus-1a_F_contig13938.2329.1|Name=mRNA_E-siliculosus-1a_F_contig13938.2329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=54bp
MSTQHGAKPDGSVGVQGSTILVDLSDDGHSSSGLLQTLPNDFTPHEKEAS
LWSG
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mRNA from alignment at E-siliculosus-1a_F_contig13938:1..843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13938.2329.1 ID=mRNA_E-siliculosus-1a_F_contig13938.2329.1|Name=mRNA_E-siliculosus-1a_F_contig13938.2329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=843bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13938:1..843- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCACACAGCACGGGGCCAAACCGGATGGATCGGTTGGAGTGCAAGG
GTCTACTATACTCGTCGATCTCTCAGATGATGGCCACAGCAGCTCAGGTG
CTTGTCGTGCAGGCGTCCTATCCGAAGAGATCAGCAACTCGAGCAACACT
GACGACCTGCGGCGAGTCTATTCGAGGATCCTGGAAATCAATTTGAATTT
TTTCAGCGATTTCTTGAGAGAATGTAGGTTGCCCTCAGAAGGCGCAGCCA
CGAGAACGAAGAGACGCAATTCACCACACGGTCTGCATAGTGACATATCG
AAAGTGTAGCAGTTGGTTTGGGCGGAATCAGCCATGACTCCGGGCCGTGA
GCCTGACCCACAAATTCACGTGTAGCTCTCCCGCTCACCCGCTCTCATCT
CATGGTCTGTTCGCTGAGGTATGCAGCGTACACTGGTTCCGGTGCCGGTT
CGCGAGCGGAACCGTCAGCGAAGGTCGTCTGGTTCTTTGCTGCTGTACGC
TGCACACGTCCTCAGCTCCTCCGCCCTCCGCTCGGTGCCAGCTGCTCTAT
GCACATTGGTCGTTGTTGTTGAGCTTCTGATCTCCGAACTCCGAACTCCG
GTGGTGCCATGGTAGGACGGGCTGGGTGATGTGATGTGCCTCTCTGCCCC
TCGTGCTTTCCGTCCCGCGTGCTCCACAGCCTTCCACACCAACTTGTCCA
CTCACTTGTCCACATTGGTCGGCCTTCTGCCGTCTGCTGTGTCATGCTCC
TGCTCTTGCCTACTTCTGTACGGACAAGGCTTGCTGCAAACCCTGCCCAA
CGACTTCACACCCCATGAAAAGGAGGCAAGCCTGTGGAGTGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13938:1..843-

>mRNA_E-siliculosus-1a_F_contig13938.2329.1 ID=mRNA_E-siliculosus-1a_F_contig13938.2329.1|Name=mRNA_E-siliculosus-1a_F_contig13938.2329.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=324bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13938:1..843- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCACACAGCACGGGGCCAAACCGGATGGATCGGTTGGAGTGCAAGG
GTCTACTATACTCGTCGATCTCTCAGATGATGGCCACAGCAGCTCAGATG
AGCACACAGCACGGGGCCAAACCGGATGGATCGGTTGGAGTGCAAGGGTC
TACTATACTCGTCGATCTCTCAGATGATGGCCACAGCAGCTCAGGCTTGC
TGCAAACCCTGCCCAACGACTTCACACCCCATGAAAAGGAGGCAAGCCTG
TGGAGTGGAGCTTGCTGCAAACCCTGCCCAACGACTTCACACCCCATGAA
AAGGAGGCAAGCCTGTGGAGTGGA
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