mRNA_E-siliculosus-1a_F_contig1393.2327.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1393.2327.1
Unique NamemRNA_E-siliculosus-1a_F_contig1393.2327.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Match: D8LCY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY9_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 3.560e-129
Identity = 201/214 (93.93%), Postives = 206/214 (96.26%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYDFDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            MGAFLCLEE EYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPG MD LTNEQICLLPAACV DSI RLQESGTEESPAYDF+T TDAMLAITKTSSEGRGDGG D+FGETSDEDAKTQLLALVVLLN+ALPEGLSCPGSLHF+RILADQSGLSDTRTDQELE+FFDQTDK VRTAVLNGLLRTLSPSDIARGAF
Sbjct:  808 MGAFLCLEEMEYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLQESGTEESPAYDFNTATDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLLALVVLLNEALPEGLSCPGSLHFIRILADQSGLSDTRTDQELENFFDQTDKRVRTAVLNGLLRTLSPSDIARGAF 1021
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BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Match: D8LFU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU0_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 6.290e-107
Identity = 161/177 (90.96%), Postives = 165/177 (93.22%), Query Frame = 1 
Query:   31 EYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYDFDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQ 561
            EYPR RAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPG MD LTNEQICLLPAACV DSI RL ESGTEESPA DF+TVTDAMLAITKTSSEGRGDGG D+FGETSDEDAKTQL ALVVLLN+ALPEGLSCP SLHF+RILADQSGL  TRTDQELEDFFDQ
Sbjct:    2 EYPRYRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGFMDGLTNEQICLLPAACVGDSICRLLESGTEESPACDFNTVTDAMLAITKTSSEGRGDGGSDIFGETSDEDAKTQLFALVVLLNNALPEGLSCPESLHFIRILADQSGLCGTRTDQELEDFFDQ 178
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BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Match: A0A6H5JXL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL9_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 1.720e-72
Identity = 138/214 (64.49%), Postives = 144/214 (67.29%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYDFDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            MG FLCLEEREYPRCRAGYEN+EEGQAKWALSVIGKIADAIDAPTHTVTLAA+TLGVAGGVPGLMDAL+NEQI LLPAACVADSI RLQESGTEESPAYD +  TDAML ITKTSSEGRGDGG                                                           + F+QTDK VRTAVL  LLRTLSPSDIARGAF
Sbjct:  689 MGVFLCLEEREYPRCRAGYENLEEGQAKWALSVIGKIADAIDAPTHTVTLAAITLGVAGGVPGLMDALSNEQIYLLPAACVADSICRLQESGTEESPAYDLNRATDAMLTITKTSSEGRGDGGA---------------------------------------------------------RELFNQTDKRVRTAVLEDLLRTLSPSDIARGAF 845
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BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Match: A0A6H5K4P3_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4P3_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.310e-60
Identity = 115/214 (53.74%), Postives = 146/214 (68.22%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYDFDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            + A LCLEE+ YPRCR GYE++ EG+ +WALSVI +I D I+ PT  V LAA+TLGV   +PG +   ++E +CLLPAACV+ +I RL +   +ES + D   + D MLAITK +SEGRG  G  VFG+    D KT LLAL   L   LPE L+CPG + ++ + A+QSGL  T T QEL   +D+ D+ VR   LNGLLRTLSPSDIARGAF
Sbjct:  838 VDAHLCLEEKAYPRCREGYESIPEGKVRWALSVIREITDTINVPTPIVALAAITLGVTAAIPGFLSRRSDEDLCLLPAACVSHAISRLDK--LDES-SVDLYGIMDQMLAITKAASEGRGKNGGPVFGQPGAGDPKTILLALFFYLMLTLPEELTCPGPMDYMEVFAEQSGLDHTLTGQELGCVYDEYDRFVRAVALNGLLRTLSPSDIARGAF 1048
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BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Match: D7G7D9_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.740e-30
Identity = 81/214 (37.85%), Postives = 103/214 (48.13%), Query Frame = 1 
Query:    1 MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTLAAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYDFDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDALPEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQTDKGVRTAVLNGLLRTLSPSDIARGAF 642
            + A+LCLEER YPRCR GY+++ EG+                                                          + +L ES        D     D ML ITK +SEGRG  G  VFG+   +D KT LLAL   L   +PE L+CPG + ++ + A+QSG+  T T QEL   +D+ D+ VR A LNGLLRTLSPSDIARGAF
Sbjct:  777 VDAYLCLEERAYPRCREGYKSIPEGKVS-------------------------------------------------------RLDKLDESSV------DLYGTMDQMLVITKAASEGRGKNGGPVFGQPGADDPKTILLALFYYLMLTMPEELTCPGPMDYMEVFAEQSGIDHTLTGQELGGVYDEYDRFVRAAALNGLLRTLSPSDIARGAF 929
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1393.2327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCY9_ECTSI3.560e-12993.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFU0_ECTSI6.290e-10790.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXL9_9PHAE1.720e-7264.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4P3_9PHAE2.310e-6053.74Protein kinase domain-containing protein n=2 Tax=E... [more]
D7G7D9_ECTSI1.740e-3037.85N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1393contigE-siliculosus-1a_F_contig1393:32395..33036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size642
Model size644
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.8045888-CDS-E-siliculosus-1a_F_contig1393:32394..330361622927905.8045888-CDS-E-siliculosus-1a_F_contig1393:32394..33036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1393 32395..33036 +
1696318731.831914-CDS-E-siliculosus-1a_F_contig1393:32394..330361696318731.831914-CDS-E-siliculosus-1a_F_contig1393:32394..33036Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1393 32395..33036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1393.2327.1prot_E-siliculosus-1a_F_contig1393.2327.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1393 32395..33036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1393.2327.1

>prot_E-siliculosus-1a_F_contig1393.2327.1 ID=prot_E-siliculosus-1a_F_contig1393.2327.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2327.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=214bp
MGAFLCLEEREYPRCRAGYENVEEGQAKWALSVIGKIADAIDAPTHTVTL
AAMTLGVAGGVPGLMDALTNEQICLLPAACVADSIYRLQESGTEESPAYD
FDTVTDAMLAITKTSSEGRGDGGRDVFGETSDEDAKTQLLALVVLLNDAL
PEGLSCPGSLHFVRILADQSGLSDTRTDQELEDFFDQTDKGVRTAVLNGL
LRTLSPSDIARGAF
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mRNA from alignment at E-siliculosus-1a_F_contig1393:32395..33036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1393.2327.1 ID=mRNA_E-siliculosus-1a_F_contig1393.2327.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2327.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1393:32395..33036+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGCCTTCCTCTGCCTGGAAGAGAGAGAGTACCCCAGATGCAGGGC
GGGCTACGAGAACGTTGAGGAAGGCCAGGCGAAGTGGGCTCTGTCGGTCA
TCGGAAAGATCGCGGACGCGATCGATGCGCCAACGCACACCGTCACGCTT
GCGGCCATGACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGC
GCTGACCAATGAACAGATCTGCCTCCTCCCCGCGGCGTGTGTGGCGGACT
CCATCTATCGACTGCAAGAATCTGGGACTGAGGAGAGCCCCGCCTATGAC
TTCGACACGGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGA
GGGCAGGGGTGACGGCGGTAGGGACGTGTTCGGCGAGACAAGCGACGAAG
ACGCCAAGACTCAGTTGCTCGCTCTCGTCGTCCTTCTGAACGACGCCTTG
CCGGAAGGCCTCTCCTGCCCGGGGTCCCTGCACTTCGTACGCATCCTCGC
CGACCAGTCAGGCCTCTCCGACACCCGCACCGACCAGGAGCTCGAGGACT
TCTTCGACCAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGCTTG
CTGCGCACACTTTCGCCGTCGGACATAGCGCGCGGTGCCTTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1393:32395..33036+

>mRNA_E-siliculosus-1a_F_contig1393.2327.1 ID=mRNA_E-siliculosus-1a_F_contig1393.2327.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2327.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1393:32395..33036+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGCCTTCCTCTGCCTGGAAGAGAGAGAGTACCCCAGATGCAGGGC
GGGCTACGAGAACGTTGAGGAAGGCCAGGCGAAGTGGGCTCTGTCGGTCA
TCGGAAAGATCGCGGACGCGATCGATGCGCCAACGCACACCGTCACGCTT
GCGGCCATGACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGC
GCTGACCAATGAACAGATCTGCCTCCTCCCCGCGGCGTGTGTGGCGGACT
CCATCTATCGACTGCAAGAATCTGGGACTGAGGAGAGCCCCGCCTATGAC
TTCGACACGGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGA
GGGCAGGGGTGACGGCGGTAGGGACGTGTTCGGCGAGACAAGCGACGAAG
ACGCCAAGACTCAGTTGCTCGCTCTCGTCGTCCTTCTGAACGACGCCTTG
CCGGAAGGCCTCTCCTGCCCGGGGTCCCTGCACTTCGTACGCATCCTCGC
CGACCAGTCAGGCCTCTCCGACACCCGCACCGACCAGGAGCTCGAGGACT
TCTTCGACCAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGCTTG
CTGCGCACACTTTCGCCGTCGGACATAGCGCGCGGTGCCTTCATGGGCGC
CTTCCTCTGCCTGGAAGAGAGAGAGTACCCCAGATGCAGGGCGGGCTACG
AGAACGTTGAGGAAGGCCAGGCGAAGTGGGCTCTGTCGGTCATCGGAAAG
ATCGCGGACGCGATCGATGCGCCAACGCACACCGTCACGCTTGCGGCCAT
GACCCTCGGAGTGGCCGGCGGCGTGCCGGGACTCATGGACGCGCTGACCA
ATGAACAGATCTGCCTCCTCCCCGCGGCGTGTGTGGCGGACTCCATCTAT
CGACTGCAAGAATCTGGGACTGAGGAGAGCCCCGCCTATGACTTCGACAC
GGTGACAGACGCGATGCTGGCGATCACGAAGACCTCGTCGGAGGGCAGGG
GTGACGGCGGTAGGGACGTGTTCGGCGAGACAAGCGACGAAGACGCCAAG
ACTCAGTTGCTCGCTCTCGTCGTCCTTCTGAACGACGCCTTGCCGGAAGG
CCTCTCCTGCCCGGGGTCCCTGCACTTCGTACGCATCCTCGCCGACCAGT
CAGGCCTCTCCGACACCCGCACCGACCAGGAGCTCGAGGACTTCTTCGAC
CAGACCGACAAGGGCGTTCGTACCGCGGTCTTGAACGGCTTGCTGCGCAC
ACTTTCGCCGTCGGACATAGCGCGCGGTGCCTTC
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