mRNA_E-siliculosus-1a_F_contig1393.2325.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1393.2325.1
Unique NamemRNA_E-siliculosus-1a_F_contig1393.2325.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1393.2325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1393contigE-siliculosus-1a_F_contig1393:23687..24099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size327
Model size414
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.1733272-CDS-E-siliculosus-1a_F_contig1393:23686..240131622927905.1733272-CDS-E-siliculosus-1a_F_contig1393:23686..24013Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1393 23687..24013 +
1696318731.609159-CDS-E-siliculosus-1a_F_contig1393:23686..240131696318731.609159-CDS-E-siliculosus-1a_F_contig1393:23686..24013Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1393 23687..24013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.1948485-UTR-E-siliculosus-1a_F_contig1393:24013..240991622927905.1948485-UTR-E-siliculosus-1a_F_contig1393:24013..24099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1393 24014..24099 +
1696318731.6171036-UTR-E-siliculosus-1a_F_contig1393:24013..240991696318731.6171036-UTR-E-siliculosus-1a_F_contig1393:24013..24099Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1393 24014..24099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1393.2325.1prot_E-siliculosus-1a_F_contig1393.2325.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1393 23687..24013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1393.2325.1

>prot_E-siliculosus-1a_F_contig1393.2325.1 ID=prot_E-siliculosus-1a_F_contig1393.2325.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2325.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
FSFLSSSEGCLLRARTSSPPPRATASLFPNQTVAVRISPLVSIVHHLGRL
LPFRVTFFVEATATVFTRGLRLVFIPREDRFLYRCYAAGNCSPGQRDYCS
CGPTGVRL*
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mRNA from alignment at E-siliculosus-1a_F_contig1393:23687..24099+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1393.2325.1 ID=mRNA_E-siliculosus-1a_F_contig1393.2325.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2325.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=413bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1393:23687..24099+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCATTTCTTTCATCATCTGAAGGGTGTCTGCTCCGAGCACGTACCTC
TTCCCCCCCCCCTCGTGCTACTGCGTCTCTCTTCCCAAACCAGACGGTAG
CTGTGAGAATTAGTCCCCTTGTTTCTATTGTCCATCATCTTGGGAGGCTA
CTGCCATTTCGTGTGACATTTTTCGTTGAAGCCACGGCCACCGTTTTCAC
TCGGGGCTTGCGTCTTGTTTTCATACCGCGGGAGGATAGGTTCTTATATA
GATGTTATGCCGCGGGCAACTGCTCACCGGGGCAGCGGGACTACTGTAGC
TGTGGTCCCACAGGTGTGCGACTCTAACACGTACGGCAATGGGAGCAGGG
AGGGGAGTGAGGGGACGAGACAACCAACGCTAATTAATGATGAACCAGGG
TCGTTGTTTTTCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1393:23687..24099+

>mRNA_E-siliculosus-1a_F_contig1393.2325.1 ID=mRNA_E-siliculosus-1a_F_contig1393.2325.1|Name=mRNA_E-siliculosus-1a_F_contig1393.2325.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1393:23687..24099+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTTCATTTCTTTCATCATCTGAAGGGTGTCTGCTCCGAGCACGTACCTC
TTCCCCCCCCCCTCGTGCTACTGCGTCTCTCTTCCCAAACCAGACGGTAG
CTGTGAGAATTAGTCCCCTTGTTTCTATTGTCCATCATCTTGGGAGGCTA
CTGCCATTTCGTGTGACATTTTTCGTTGAAGCCACGGCCACCGTTTTCAC
TCGGGGCTTGCGTCTTGTTTTCATACCGCGGGAGGATAGGTTCTTATATA
GATGTTATGCCGCGGGCAACTGCTCACCGGGGCAGCGGGACTACTGTAGC
TGTGGTCCCACAGGTGTGCGACTCTAATTTTCATTTCTTTCATCATCTGA
AGGGTGTCTGCTCCGAGCACGTACCTCTTCCCCCCCCCCTCGTGCTACTG
CGTCTCTCTTCCCAAACCAGACGGTAGCTGTGAGAATTAGTCCCCTTGTT
TCTATTGTCCATCATCTTGGGAGGCTACTGCCATTTCGTGTGACATTTTT
CGTTGAAGCCACGGCCACCGTTTTCACTCGGGGCTTGCGTCTTGTTTTCA
TACCGCGGGAGGATAGGTTCTTATATAGATGTTATGCCGCGGGCAACTGC
TCACCGGGGCAGCGGGACTACTGTAGCTGTGGTCCCACAGGTGTGCGACT
CTAA
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