mRNA_E-siliculosus-1a_F_contig1391.2317.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: D7G9D4_ECTSI (Spherulin 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI) HSP 1 Score: 941 bits (2432), Expect = 0.000e+0 Identity = 490/555 (88.29%), Postives = 497/555 (89.55%), Query Frame = 1
Query: 100 LRGTTTLFAVAAAGLLNVAVSQEFPEMEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAPHLLTDAVNLEIYTAHNTFAHSTLDSTTEEARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFVEASRNIPTVESCGDGGLKIIAPLLGSDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQQKTFLQPTVVFAPEVQNYSDGFESSYSFSYDFVEVDEDDWYSTNNWDSTTNFELPWEDVMTETDLVALAESLTVGLGDGATAGEIVVAEAMDGGSVIPEAPEPNEGTAALITGYAGPPE---RERESRPAGRRRSERRLPEFKTHDTR 1755
+ G TTLFAVAAAGLLNVAVSQEFP MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTD SYP+VIDYVKGAGAKMLCYVATTYGNKTTGSVEEEI AYQS EARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAF+EASRNIPTVESCGDGGLKIIAPLLG+DDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQ KTFLQPTVVFAPEVQ+YSDGFESSYSFSYDFVEVDEDDWYSTNNWDSTTNFELPWEDVMTETDLVALAESLTVGLGDGATAGEIVVAEA+DGGSVIPEAPEPNE TAAL+TGYAG PE RERE RPAGRR SER LPEFK HDTR
Sbjct: 1 MMGGTTLFAVAAAGLLNVAVSQEFPAMEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDASYPDVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEITAYQS-------------------------------------------EARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFIEASRNIPTVESCGDGGLKIIAPLLGNDDADTEAIMATADPGDYGDRIMVAMNVEITETGESTDRAAAVRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPLNEICGGFFFGAFNILLAIEDMPGMQSLYLKTQ-KTFLQPTVVFAPEVQDYSDGFESSYSFSYDFVEVDEDDWYSTNNWDSTTNFELPWEDVMTETDLVALAESLTVGLGDGATAGEIVVAEAIDGGSVIPEAPEPNESTAALVTGYAGAPENGDRERERRPAGRRPSERWLPEFKPHDTR 511
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: D8LFB3_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB3_ECTSI) HSP 1 Score: 173 bits (438), Expect = 1.700e-42 Identity = 121/408 (29.66%), Postives = 190/408 (46.57%), Query Frame = 1
Query: 157 VSQEFPEMEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTD--TSYPEVIDYVKGAG-------------AKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAPHLLTD-----AVNLEIYTAHNTFAHSTLDSTTEEA--------RVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPET-SDISTPPQNMLLLHSAT-----ELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEG-----NPWDNPPTFWTAFVEASRNIPTVE--SCGDGGLKIIAPLLGSDDADTEAIMATADPGDYGDRIMVAMNVEI-TETGESTDRAAA-VRDAGAKVLCYIEADKYGNDLATLEEVVETYTFFPL-NEICGGFF 1248
VS + P ME ++PLY P D P W L T TG + ILNP SGP V + Y +++ G M+CYV+T YG+++ V +I Y++ +PG CDGIFFDEAP +TD ++Y +N + TE+ V FN G D YF+FS V+ YEN+++ ++ +G+P T S + P Q+ L +H+ + E L++ V +A C GWG +Y+T D D G NPW+ +W VEA + PT+ SC + ++ P+ + +A +A+ + + + V + G+ T+ A +RDAGA+VLCY + + Y + + E+ E+CGG +
Sbjct: 6 VSAQTPMMEIILPLYQFPYSDFQVEA---PMWEQLLATTITGTPITAILNPMSGPNVVDNDLALYKTILNTFLNLGDDRADPSADEHDSLTMICYVSTDYGDRSEDEVNADIDQYETNFPGVCDGIFFDEAPADITDEGGNPTATGDLYERYNNYVVEKEFPDTEDPDLLQDRSWTVTFNPGGGVDPAYFAFSGNPTVMSYENFYRVMKNVGMPRTPSSVLDPSQHALAVHTTSPDLDGNTEETRALVEAIVQEAACSGWGKIYLTSDSQDPGSDDGGNPWNVLTNYWDTLVEAVKAYPTLPPPSCSGPEMALMVPVWLAGEALEDAVDDVLGVVTKSNFLEGGVTVVLDARDGDGTNPTATQLRDAGARVLCYFDFNSYTDVYDLIGELTSADPPAAFATEVCGGLY 410
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A517XLQ9_9BACT (Spherulation-specific family 4 n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517XLQ9_9BACT) HSP 1 Score: 95.1 bits (235), Expect = 3.390e-18 Identity = 72/230 (31.30%), Postives = 107/230 (46.52%), Query Frame = 1
Query: 241 DPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAPHLLTD-AVNLEIYTAHNTFAHSTLDSTTEEARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKG--WGTVYVTDDLFDEGNPWDNPPTFWTAFVEA 921
D +W LA+ A G + I+NPASGPG+VTD +Y VID V+ AG + YV+T+Y + V ++ + LYP GIF DE P + A LE+ + + + ++ N G D YF P V +EN + R+ P + P + L+H+ P+ P + A +G +G V+VTD NPWD PT+W + A
Sbjct: 41 DARWQQLADAAKNGVPLTVIVNPASGPGKVTDPNYTAVIDGVQKAGVTTVGYVSTSYARRPAADVLADVKTWLKLYP-TTQGIFLDEQPSGAAEVAAYLELCES--------IRRLNPKLTILSNPGTVCDAGYFGTGGPDVVCVHENE-GSFRKYARPAKA--YPPGRTAGLVHTT------PQGANPAAEVALARGHGFGMVFVTDARMP--NPWDRLPTYWDDLLTA 250
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A533ULB9_9ARCH (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Thaumarchaeota archaeon TaxID=2026795 RepID=A0A533ULB9_9ARCH) HSP 1 Score: 73.2 bits (178), Expect = 5.420e-10 Identity = 63/220 (28.64%), Postives = 98/220 (44.55%), Query Frame = 1
Query: 262 AETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAPHLLTDAVNLEIYTAHNTFAHSTLDSTTEEARVVFNTGQAADEQYFSFSPPAEVLG-YEN-YFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFV 915
A+ A + I+NP+SGP D++Y I ++ AG K+L YV T+YG ++T S+E +I +Y + Y +GIFFDE + + V E Y +S L S + + G + S+ ++L YEN A+ L TS P N + +I D +Y +Y+TDD NP+D P++ A V
Sbjct: 3 AKNAYPSVPIVAIINPSSGPSSSIDSNYVSGIQQLQAAGVKVLGYVYTSYGTRSTSSIESDINSYNNWYH--VNGIFFDE----MANKVGFETY-------YSNLSSYAKSLSMTMTVGNPGTDTLSSYIGTVDILDIYENPSLPALTSLTGWHTS---YPKSNFGFIGFGVSSLPNQSIIT--ADSSYV---AYMYITDDTLP--NPYDTVPSYLNAEV 199
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A518HBN0_9BACT (Spherulation-specific family 4 n=1 Tax=Tautonia plasticadhaerens TaxID=2527974 RepID=A0A518HBN0_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 2.610e-9 Identity = 66/253 (26.09%), Postives = 108/253 (42.69%), Query Frame = 1
Query: 178 MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVI-DYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAPHLLTDAVNLEIYTAHNTFAHSTLDSTTEEARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFVEASRNI 933
++ ++P Y P +D W L T+A + ++NPASGPGE+ + Y +++ AG M+ YV T + + +E +I + YP GIF D ++ N + Y + + ++D A VV N G A E YF + +EN + +P PP + A + AE E + +A KG G ++VTD + NPW + P +W V+A +
Sbjct: 209 LKILVPAYFFPAASG-----LD-DWKRLL-TSARRVPIVAVVNPASGPGELPNRDYADIVRGGTATAGLTMIGYVNTAFATRPRPEIEADIDRWVRFYP-EIQGIFLDAQS---SEGQNEDFYADLSDYVRRSIDG----AIVVTNPGTACAEGYFESGAADIAIVFENSH-GFDEFELPLWR-FRYPPGRFAAVPYAVKTAEAME---DAIRQAGEKGIGYLFVTDGVMP--NPWRSLPPYWAELVDAVEAV 439
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: UPI001F46EA5D (spherulation-specific family 4 protein n=1 Tax=Streptomyces glomeratus TaxID=284452 RepID=UPI001F46EA5D) HSP 1 Score: 63.2 bits (152), Expect = 1.350e-7 Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 1
Query: 178 MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFD 498
M ++PLY+ P D G W L A T +LNPASGPG D ++ V ++ AGA++L YV T YGN+ + E++ +Q Y A DG F D
Sbjct: 1 MTLLVPLYVHPAEDPG-------AWHRLIRAAT--RTYAIVLNPASGPGTGPDRAFTAVAGALRAAGARLLGYVDTDYGNRDRAEIAEDLRRHQRWY--AADGCFLD 96
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A069K0T2_9ACTN (Uncharacterized protein n=11 Tax=Streptomyces TaxID=1883 RepID=A0A069K0T2_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 4.420e-7 Identity = 39/110 (35.45%), Postives = 52/110 (47.27%), Query Frame = 1
Query: 178 MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFDEAP 507
M ++PLY+ P D G W L AA T +LNPASGPG D +Y ++ AGA +L YV T YG + V +E+ ++ Y DG F D P
Sbjct: 1 MSLLVPLYVHPAEDPG-------AWHRLI--AAARRTYAVVLNPASGPGTAPDPAYVSAAAALRSAGAHVLGYVDTDYGERPPSEVADEVAKHRDWYQA--DGCFLDRTP 99
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A1I2K2G6_9ACTN (Spherulation-specific family 4 n=9 Tax=Streptomyces TaxID=1883 RepID=A0A1I2K2G6_9ACTN) HSP 1 Score: 61.6 bits (148), Expect = 6.980e-7 Identity = 37/107 (34.58%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 178 MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFD 498
M +IPLY+ P D G W L AA T ++NPA+GPG D ++ ++ AGA++L YV T YG ++T V E+++ ++ Y DG F D
Sbjct: 1 MSLLIPLYVHPAEDPG-------AWHQLVTAAA--RTYAVVINPANGPGPSPDPAFTAAAGALRAAGARLLGYVDTDYGARSTAEVAEDVVRHREWY--GADGCFLD 96
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A369K2H8_HYPMA (Spherulin-4 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K2H8_HYPMA) HSP 1 Score: 61.6 bits (148), Expect = 8.520e-7 Identity = 76/258 (29.46%), Postives = 113/258 (43.80%), Query Frame = 1
Query: 187 VIPLYIAPMFDNGTTVTIDPQWTALAETAATGATV--FGILNPASGPGEV---TDTSYPEVIDYVKGAGA------KMLCYVATTYGNKTTGSVEEEIMAY-QSLYPGACDGIFFDEAPHLLTDAVNLEIYTAHNTFAHSTLDSTTEEARVVFNTGQA-ADEQYFSFSPPAEVL-GYENYFKAVRQLGVPETSDISTPPQNMLLLHSA-TELAEKPELIQPFVDKAYCKGWGTVYVTDDLFDEGNPWDNPPTFWTAFV 915
+ PLYI P DN W L T + + I+NPASGPG DT+Y I ++ GA K+L YVAT YG++T+ V +I Y Q +GIFFDE + T A L Y ++T H+ + + +VFN G A Y+ S G+ N F A + P S + ++LH+ T++ +++Q + A G ++TD F + N PT W F+
Sbjct: 30 IFPLYIYPG-DNCV------AWAPLISAIRTNTVLQFYLIINPASGPGAAGTQPDTTYQACIATLRSTGAAAGGNVKLLGYVATGYGSRTSSLVTTDIHTYSQWATTYRPEGIFFDE---VATAANQLSTYQTYSTKVHTDFGT----SYIVFNPGAVPATTGYYGISDLIVTFEGFYNDFDASDLIIGPS----SPSRKQAVILHTGPTQIPS--QIVQ---NLASIIKVGASFITD--FPNAIAYQNFPTDWNGFL 262
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Match: A0A2K8PQ96_STRLA (Spherulation-specific family 4 n=1 Tax=Streptomyces lavendulae subsp. lavendulae TaxID=58340 RepID=A0A2K8PQ96_STRLA) HSP 1 Score: 60.5 bits (145), Expect = 1.100e-6 Identity = 38/107 (35.51%), Postives = 50/107 (46.73%), Query Frame = 1
Query: 178 MEFVIPLYIAPMFDNGTTVTIDPQWTALAETAATGATVFGILNPASGPGEVTDTSYPEVIDYVKGAGAKMLCYVATTYGNKTTGSVEEEIMAYQSLYPGACDGIFFD 498
M ++PLY+ P D G W L A T +LNPASGPG D ++ + AGA++L YV T YG + V EI+ Y+ Y DG F D
Sbjct: 1 MTLLVPLYVHPAEDPG-------AWARLIGAAP--RTYAVVLNPASGPGPRPDPAFTAAASALHAAGARLLAYVDTAYGQRDAAEVNYEILRYREWY--GVDGCFLD 96 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1391.2317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1391.2317.1 >prot_E-siliculosus-1a_F_contig1391.2317.1 ID=prot_E-siliculosus-1a_F_contig1391.2317.1|Name=mRNA_E-siliculosus-1a_F_contig1391.2317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=586bp PTHLLPQTPATRCAALLLAISHPPPFRYSSPKMLRGTTTLFAVAAAGLLNback to top mRNA from alignment at E-siliculosus-1a_F_contig1391:15739..27298- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1391.2317.1 ID=mRNA_E-siliculosus-1a_F_contig1391.2317.1|Name=mRNA_E-siliculosus-1a_F_contig1391.2317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11560bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1391:15739..27298- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1391:15739..27298- >mRNA_E-siliculosus-1a_F_contig1391.2317.1 ID=mRNA_E-siliculosus-1a_F_contig1391.2317.1|Name=mRNA_E-siliculosus-1a_F_contig1391.2317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1391:15739..27298- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |