mRNA_E-siliculosus-1a_F_contig1390.2314.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1390.2314.1
Unique NamemRNA_E-siliculosus-1a_F_contig1390.2314.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1390.2314.1 vs. uniprot
Match: D7G4F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.800e-10
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   25 SNHMEPTA*ISRFYPDRKTAIAMVAAALIAGVCV-ATTSAQVTDGDGI 165
            SNH  PTA   RFYPDRKTA+A+VAAAL+ G C  A TSAQ TD D I
Sbjct:    7 SNHTAPTACFPRFYPDRKTAVAIVAAALVGGACCFAMTSAQATDADAI 54
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1390.2314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4F5_ECTSI3.800e-1066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1390contigE-siliculosus-1a_F_contig1390:21628..22201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size111
Model size169
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1390.2314.1prot_E-siliculosus-1a_F_contig1390.2314.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1390 21675..22190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.2997115-UTR-E-siliculosus-1a_F_contig1390:21627..216741622927903.2997115-UTR-E-siliculosus-1a_F_contig1390:21627..21674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1390 21628..21674 +
1696318730.7393546-UTR-E-siliculosus-1a_F_contig1390:21627..216741696318730.7393546-UTR-E-siliculosus-1a_F_contig1390:21627..21674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1390 21628..21674 +
1622927903.3507838-UTR-E-siliculosus-1a_F_contig1390:22190..222011622927903.3507838-UTR-E-siliculosus-1a_F_contig1390:22190..22201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1390 22191..22201 +
1696318730.7657156-UTR-E-siliculosus-1a_F_contig1390:22190..222011696318730.7657156-UTR-E-siliculosus-1a_F_contig1390:22190..22201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1390 22191..22201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927903.317435-CDS-E-siliculosus-1a_F_contig1390:21674..216861622927903.317435-CDS-E-siliculosus-1a_F_contig1390:21674..21686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1390 21675..21686 +
1696318730.748071-CDS-E-siliculosus-1a_F_contig1390:21674..216861696318730.748071-CDS-E-siliculosus-1a_F_contig1390:21674..21686Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1390 21675..21686 +
1622927903.332602-CDS-E-siliculosus-1a_F_contig1390:22091..221901622927903.332602-CDS-E-siliculosus-1a_F_contig1390:22091..22190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1390 22092..22190 +
1696318730.7568836-CDS-E-siliculosus-1a_F_contig1390:22091..221901696318730.7568836-CDS-E-siliculosus-1a_F_contig1390:22091..22190Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1390 22092..22190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1390.2314.1

>prot_E-siliculosus-1a_F_contig1390.2314.1 ID=prot_E-siliculosus-1a_F_contig1390.2314.1|Name=mRNA_E-siliculosus-1a_F_contig1390.2314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=37bp
MNLTFLPRPEDRNCYGSSSSDCGSLRRHDVGPGDRR*
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mRNA from alignment at E-siliculosus-1a_F_contig1390:21628..22201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1390.2314.1 ID=mRNA_E-siliculosus-1a_F_contig1390.2314.1|Name=mRNA_E-siliculosus-1a_F_contig1390.2314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=574bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1390:21628..22201+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCAAATGCCGATCGCGTGCCGTTCGAACCACATGGAGCCAACCGCATG
AATCTCACGGTGCGCCACGTAGGAGGGGGGGGGTCGAAGCCATGACGCGC
GGCGTGTGTTGACGGGGTGGTTGTTGTCGTCGTCGTCGTCATTGTTGTTG
TTGTTGTTGGTTGGGATATGGTGCACGTGGTCCAGCAAGCAACTTGTCTT
GTTCTCCACGCGGAAGTTCCGATTCAGGGCGAGGGGGGGGGGGGTGAGCC
TGGCTTGAGGAAATGAGGTAGATTCTCAAGCTGGCTCGCTGGTGTTGTGC
GATGCCGCGAGACTGCAAATACGCTATGGGACATTCGTTCGCATGGTTAT
GGCTCTTCCCGCTGTTGGGGAACTGCGGCGTACTTTTGGGGAAAACCAAA
GGCGTCAACTACGCCCTTTCTTCCCGCGTGGTTTCGTGCTCCTTCTTTCT
GTCCGTGCTGGCAGTTTTTACCCCGACCGGAAGACCGCAATTGCTATGGT
AGCAGCAGCTCTGATTGCGGGAGTTTGCGTCGCCACGACGTCGGCCCAGG
TGACAGACGGTGACGGCATCTTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1390:21628..22201+

>mRNA_E-siliculosus-1a_F_contig1390.2314.1 ID=mRNA_E-siliculosus-1a_F_contig1390.2314.1|Name=mRNA_E-siliculosus-1a_F_contig1390.2314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=222bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1390:21628..22201+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATCTCACGATGAATCTCACGTTTTTACCCCGACCGGAAGACCGCAA
TTGCTATGGTAGCAGCAGCTCTGATTGCGGGAGTTTGCGTCGCCACGACG
TCGGCCCAGGTGACAGACGGTGATTTTTACCCCGACCGGAAGACCGCAAT
TGCTATGGTAGCAGCAGCTCTGATTGCGGGAGTTTGCGTCGCCACGACGT
CGGCCCAGGTGACAGACGGTGA
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