mRNA_E-siliculosus-1a_F_contig1387.2296.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: D7FMV3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMV3_ECTSI) HSP 1 Score: 761 bits (1964), Expect = 5.830e-274 Identity = 395/417 (94.72%), Postives = 399/417 (95.68%), Query Frame = 1
Query: 442 MRMMRKAVIALGVVLLISCLGIFRVWPGLRRHHVDSTGPVPTPAPTIPPFSFEYPAVVEKKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAKACPIAKALYPSLATPRTKQDYERARRELRRELENLAAYPAEFMTEGQATIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDDDTAQHLEEKMLENVKPGSASSRPGSKPSNPTMEWTKQQGRLPNGAMNYHPKDPRYGPHRAKYDGNQFLKAGTAEQAAELETAAAEXXXXXXXXXEAERAKEEARDRDSWDLSFELVVARLQQKLDKIEEVVCTTTATTMGTSDGSA 1692
MRMMRKAVIALGVVLL+SCLGIFRVWPGLRRHHVDSTGPVPTPAPTIPPFSFEYPAVVEKKTVSS+LRVMFLVGLEGTGHHYFLNVFDD CTTAAVPCA ACPIAKALYPSLATP TKQDYERARRELRRELENLAAYPAEFMTEGQA IAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQ HRVARFIAPD+DTAQ LE KMLENVKPGSAS RP SNPTMEWTKQQGRLPNGAMNYHPKDPRYGPHRAKYDGNQFL AGTAEQAAELE AAA XXXXXX EAERAKEEARDRDSWDLSFELVVARLQQKLDKIEE+VCTTTATTMGTSDGSA
Sbjct: 1 MRMMRKAVIALGVVLLMSCLGIFRVWPGLRRHHVDSTGPVPTPAPTIPPFSFEYPAVVEKKTVSSQLRVMFLVGLEGTGHHYFLNVFDDACTTAAVPCANACPIAKALYPSLATPSTKQDYERARRELRRELENLAAYPAEFMTEGQAAIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQTHRVARFIAPDEDTAQRLEGKMLENVKPGSASPRP----SNPTMEWTKQQGRLPNGAMNYHPKDPRYGPHRAKYDGNQFLNAGTAEQAAELEAAAAXXXXXXXTTIEAERAKEEARDRDSWDLSFELVVARLQQKLDKIEEIVCTTTATTMGTSDGSA 413
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: D7FMV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV4_ECTSI) HSP 1 Score: 298 bits (762), Expect = 1.160e-92 Identity = 147/237 (62.03%), Postives = 185/237 (78.06%), Query Frame = 1
Query: 592 SFEYPAVVEKKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAKACPIAKALYPSLATPRTKQDYERARRELRRELENLAAYPAEFMTEGQATIAQFVTCRSK-SGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDDDTAQHLEEKMLENVK 1299
SF YP VVEKK VSSR+RV+FLVGLEGTGHHY +V +DVC V C K C +AK LYP L+ P+++ Y AR+ LR E+E LAA+P E + EG++T+ F CR + +GMMS+PNFNG++KALQYVDFRL+AEEAERAGVD+RFVYLARSA IL SD+ H++YGG+F+RESR L+NN AVV STFQEL P F TCFRY M+DP QA RVA F+AP++ TA+ L +++L +VK
Sbjct: 92 SFRYPVVVEKKAVSSRMRVVFLVGLEGTGHHYMADVLEDVCKKDKVRCPKLCVMAKVLYPELSLPKSRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSGHHNYGGSFIRESRILLNNLAVVHSTFQELDPSFTTCFRYGEMADPAQAARVAGFLAPNNHTAEKLADQILSHVK 328
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A6H5KIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA1_9PHAE) HSP 1 Score: 243 bits (620), Expect = 4.330e-73 Identity = 121/203 (59.61%), Postives = 155/203 (76.35%), Query Frame = 1
Query: 694 NVFDDVCTTAAVPCAKACPIAKALYPSLATPRTKQDYERARRELRRELENLAAYPAEFMTEGQATIAQFVTCRSK-SGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDDDTAQHLEEKMLENVK 1299
+V +DVC V C K C +AK LYP L+ P ++ Y AR+ LR E+E LAA+P E + EG++T+ F CR + +GMMS+PNFNG++KALQYVDFRL+AEEAERAGVD+RFVYLARSA IL SD+ H++YGG+F+RESR L+NN AVV STFQEL P F TCFRY M+DP QA RVA F+AP++ TA+ L ++ML +VK
Sbjct: 3 DVLEDVCKKDKVRCPKLCVMAKVLYPELSLPESRNAYWDARKRLREEMEKLAAFPEESLAEGESTVVSFGACRFQGTGMMSYPNFNGDEKALQYVDFRLVAEEAERAGVDMRFVYLARSAADILTSDSVHHNYGGSFIRESRILLNNLAVVHSTFQELDPAFTTCFRYGEMADPAQAARVAGFLAPNNRTAEKLADQMLSHVK 205
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A6H5JH94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH94_9PHAE) HSP 1 Score: 106 bits (264), Expect = 4.770e-21 Identity = 75/254 (29.53%), Postives = 125/254 (49.21%), Query Frame = 1
Query: 607 AVVEKKTVSSRLRVMFLVGLEGTGHHYFL----NVFDDVCTTAAVPCAKACPIAKALYPSLATPRTKQDYERARRELRRELEN---LAAYPAEFMTEGQATIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYG-------------GTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFIAPDDDTAQHLEEKMLENVKPGS 1308
A++ K VS R++F+ GLEGTGHHY + ++F D +P + K +Y A + Q+ ++ +EN LA + A + G + C S+P +G K +QY+D ++AE AE AG+D R +YL RSA+ +++++T H + F++ R L + AV+ S E+GP F C ++ + D EQA +A FI+P+D+ A +E +++ K S
Sbjct: 137 AILPKTHVSDVFRLVFVAGLEGTGHHYVMWANASLFGD---NMNLP--RRYGHGKEIYEYYAPLKMGQNVKQFTMSSHNAVENMRRLAEWAANLSSPGALEFFS-IPC-------SYPVNSGPLKVMQYMDLGMIAETAEGAGIDFRVLYLRRSAKEVVIANTVHRKFHLLMGDDEETVGQERLFLKYMRVLFTDIAVLHSFLGEIGPEFVVCHDWDRLGDKEQASTIASFISPNDEIASLVESSLVQTAKKSS 377
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A7S3PR25_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR25_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.870e-15 Identity = 68/214 (31.78%), Postives = 98/214 (45.79%), Query Frame = 1
Query: 619 KKTVSSRLRVMFLVGLEGTGHHYFLNV---------------FDDVCTTAAVPCAKACPIAKALYPSLATPRTKQDYERARRELRRELENLAAYPAEFMTEGQATIAQFVTCRSKSGMM-SFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHY--GGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMS 1206
KKTV S+LR++F VGLEGTGHH + + +D+ A C K + S A+ K YE A + + A T + + G + S+P F G++K LQ+ D LAE AE G+D R V L R A +++SD H H+ G M E R L NNAA + +T + P F +C +Y+ +
Sbjct: 413 KKTVFSKLRLVFFVGLEGTGHHLWQGIVMKLLKNKQLNAECKLNDLIMHPAGGCWAPWNNGKGFFCSAASESFKTGYEMA-------ADAMMKLKASNATGTHMLNLVYRGWKGNCGSIASYPCFGGSEKNLQHPDVLKLAELAESIGIDFRVVLLQRKAEELVISDIWHRHFNIGHPKMYEERVLENNAASIYTTIATMDPKFYSCTQYDDST 619
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A7S3PJR3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJR3_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 3.600e-14 Identity = 63/219 (28.77%), Postives = 98/219 (44.75%), Query Frame = 1
Query: 601 YPAVVEKKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAK--------ACPIAKALYPSLATPRTKQDYERARRELRRELENLAAYPAEFM----TEGQATIAQFVTCRSKS-----GMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMR-ESRALINNAAVVESTFQELGPGFATCFRYESM 1203
YP ++ K+ S +LR +F++GLEGTGHH +L ++ D + CA A + ++ + R + Y + R + L + AE ++ T C G MS+PNF ++ D RL+AE E G+D R + + R A +L+S T H H+G + A I N+A+V+S L P F C YE
Sbjct: 6 YPDILPKRAFSDQLRFVFVMGLEGTGHHMWLPIWTDCQNKSNCDCAPQIEDFTFGADQMRSGMFGAFTGKREVEQY------VERVISQLPSKLAEDQKARGSDQSVTYLLNTLCVKHKHYWSVGAMSYPNFMNGCRSWSNPDVRLMAEVFESLGIDFRVMVVVRDALDVLLSTTVHRHFGRFEPTGHTYASIVNSAMVDSQLARLDPTFFKCLEYEKF 218
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A7S0A0K6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A0K6_9DINO) HSP 1 Score: 84.7 bits (208), Expect = 5.150e-14 Identity = 73/236 (30.93%), Postives = 107/236 (45.34%), Query Frame = 1
Query: 610 VVEKKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAKACPIAKALYPS------------LATPRTKQDYE-------------RARRELRRELENLAAYPAEFMTEGQATIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSDPEQAHRVARFI 1242
++ K+ +R R++F+ GLEG+GHH ++ + C A CA + + L+ L PR + +E RA E+R L L+ A +A C GMMS+PNF G K Q D RLLAE AE GVD R + L R A ++L S T H H+G ++ E+ L +NA + + Q L P F C Y+ + PE + F+
Sbjct: 98 LLPKRVHGARWRLLFVAGLEGSGHHLWIPLLKR-CVKAR-RCAADVELGRRLWTDRTRKGLWSFETKLYAPRAAKKWEYAPPGAKWLSGFRRAEGEVRTALRRLSRRNAT-----SPLLASLGGC----GMMSYPNFPGKLKMFQTPDVRLLAELAEDEGVDFRILVLHRPAAAVLRSTTIHRHFG-SWNTEAVVLEHNAQTLLAQLQSLDPAFVLCTEYDRL--PEFPEGLEAFL 319
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A7S3LMY4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LMY4_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.080e-10 Identity = 63/238 (26.47%), Postives = 100/238 (42.02%), Query Frame = 1
Query: 598 EYPAVVEKKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAKACPIA---KALYPSLATPRTKQDY---------ERARRELRRELENLAAYPAEFMTEGQA------TIAQFVTCRSKSGM---------------MSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGG-TFMRESRALINNAAVVESTFQELGPGFATCFRYESMSD 1209
EYP V++K+ S + R +F++G+EGTGHH F +V + C T CP+ A + A K DY + ++ + + L E+ + + T F+ G +S+PNF G + Q D R+LAE E GVD R V L R A +L+S+ H + + + I N +++S L P F C Y+++ D
Sbjct: 141 EYPDVLKKQAYSDKTRFVFILGIEGTGHHMFHSVLRE-CPTCT------CPVGINGNADHGGFAVSSYKHDYGVFGSKEGKDGVKKHVNMFTDGLLKSLEEYYKDDEGRFKATDTTTFFINSYKDEGETGRCTLWQDWSSYSEISYPNFGGRCRRWQIPDVRILAEMFESQGVDFRVVVLVRDALDLLISNAVHRKWERWSVIAPQYISILNDNILKSQLLRLDPNFFRCIDYDNLPD 371
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A812KSC5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KSC5_9DINO) HSP 1 Score: 73.6 bits (179), Expect = 1.320e-10 Identity = 59/200 (29.50%), Postives = 95/200 (47.50%), Query Frame = 1
Query: 619 KKTVSSRLRVMFLVGLEGTGHHYFLNVFDDVCTTAAVPCAKACPIAKALYPSL------ATPRTKQDYERARRELRRELE-NLAAYPAEFMTEGQATIAQFVTCRSKSGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYE 1197
K SS++R +F GLEG+GHH++ + + P ++ +++AL+ A ++ DY +L E+E NL++ P G +A SGMMS+PN G D+A + D LA+ AE AGVD+R V L R S++ S + N Y R + +++ + L P + C+ YE
Sbjct: 60 KTATSSQVRFVFFAGLEGSGHHFWHEMIKRL------PINRSEDLSRALFDGQHGGFFNADEHSRGDYAEDIAKLMSEMEMNLSSTP------GCKVVALNGVEPQVSGMMSYPNMGGKDRAGRNPDIFALAKLAEAAGVDLRIVLLTRHPESMVQSMCERN-YEKDVAHAVREVAMTISLLSEQLELLDPSYVACWTYE 246
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Match: A0A7S2GH68_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GH68_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.420e-10 Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query: 919 SGMMSFPNFNGNDKALQYVDFRLLAEEAERAGVDVRFVYLARSARSILVSDTQHNHYGGTFMRESRALINNAAVVESTFQELGPGFATCFRYESMSD 1209
SGM+S+PNF G DKAL + LA AE AGVD+R + L R A ++VS T+H + E L +NAA + + Q + P F C Y SM +
Sbjct: 29 SGMLSYPNFGGYDKALHRPNIHQLAMLAEEAGVDLRILVLQRPAHELMVSTTKHRKFNSK-PTEMAVLGDNAAGLAAQLQLIDPRFFLCVDYSSMGN 124 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1387.2296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1387.2296.1 >prot_E-siliculosus-1a_F_contig1387.2296.1 ID=prot_E-siliculosus-1a_F_contig1387.2296.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=418bp MRMMRKAVIALGVVLLISCLGIFRVWPGLRRHHVDSTGPVPTPAPTIPPFback to top mRNA from alignment at E-siliculosus-1a_F_contig1387:10625..17594- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1387.2296.1 ID=mRNA_E-siliculosus-1a_F_contig1387.2296.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6970bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1387:10625..17594- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1387:10625..17594- >mRNA_E-siliculosus-1a_F_contig1387.2296.1 ID=mRNA_E-siliculosus-1a_F_contig1387.2296.1|Name=mRNA_E-siliculosus-1a_F_contig1387.2296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2508bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1387:10625..17594- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |