mRNA_E-siliculosus-1a_F_contig1383.2280.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1383.2280.1
Unique NamemRNA_E-siliculosus-1a_F_contig1383.2280.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: D8LFV9_ECTSI (Calcium homeostasis endoplasmic reticulum protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV9_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 1.180e-151
Identity = 241/259 (93.05%), Postives = 244/259 (94.21%), Query Frame = 1 
Query:    1 MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYRRNKSYSFRRF 777
            MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRR+KPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEER    XXXXXXXXXX       XXX  QNDRGRRNRD+GFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQ  MDKSGIGGGDGS+KKKTDAAEQDAFEAYRRNKSYSFRRF
Sbjct:    1 MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRRYKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERKKEKXXXXXXXXXXLAGKEGGXXXSGQNDRGRRNRDEGFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQ--MDKSGIGGGDGSIKKKTDAAEQDAFEAYRRNKSYSFRRF 257
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A6H5J830_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J830_9PHAE)

HSP 1 Score: 437 bits (1123), Expect = 2.030e-147
Identity = 256/259 (98.84%), Postives = 257/259 (99.23%), Query Frame = 1 
Query:    1 MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYRRNKSYSFRRF 777
            MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRR+KPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFG GGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKT AAEQDAFEAYRRNKSYSFRRF
Sbjct:  431 MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRRYKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFGVGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTAAAEQDAFEAYRRNKSYSFRRF 689
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A835YPB1_9STRA (Calcium homeostasis endoplasmic reticulum protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.560e-29
Identity = 114/262 (43.51%), Postives = 141/262 (53.82%), Query Frame = 1 
Query:   25 PWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLEKLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXX-------QNDRG--RRNRDDGFGAGGSQQGLRAK-QAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIG-----GGDGSVKKKTDAAEQDAFEAYRRNKSYS 765
            PW     P +G   SVQS     FPVAAG+A   HG D  ++ + VG M  ++R +LR G + + P++   +P    PHIEPGRL+VR+D+FY R TLE    ERXXXXXXXXXXXXXXXXXX               + DRG  R  RD G   GG   G R   QA  E +         + EEN+G   LKKMGW EG GLG    G+ EP+ G GQ  MD+ GIG     GG G          +D +E YR+ KSY+
Sbjct:    5 PWGAPHTPPVGAPASVQS----LFPVAAGMA--PHGQD--IDNMQVGIMVALVRAALRGGAKPYAPINAAAMPPAKPPHIEPGRLEVRLDDFYRRLTLEDDKRERXXXXXXXXXXXXXXXXXXRGRGDYQHNRRSDSRERDRGGYRERRDWGDRGGGRGGGYRPPPQAMPETQ---------ISEENVGFQALKKMGWQEGAGLGVGGKGIAEPVKGGGQ--MDRGGIGVKPPSGGGG--------GPEDMYEQYRKAKSYN 239
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A8J2STI1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2STI1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 5.080e-11
Identity = 85/209 (40.67%), Postives = 116/209 (55.50%), Query Frame = 1 
Query:  145 LEKLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYRRNKSYSFR 771
            L  +PVG MAG+++V+L  G   ++P+D+  +P      +EPGRL+ RV EFY    LE+    R XXXXXXXXXXXXXXXXXXXXXXXXX   R     D G+            +   E  +  QG +  +G +N+GH +L++MGW EG GLG+  +G+ EPI    Q S    G+G G      +     +D F  YR  +S  +R
Sbjct:  162 LSTIPVGVMAGLVKVALNGGHEPWRPLDLTTMPTAAPMPVEPGRLEARVKEFYR--LLEKDKLRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAYEQLDSGYST----------RRVDEDATRRQGLDAAIGADNMGHQMLQQMGWREG-GLGARGTGIAEPIDVRQQQS--NQGVGAG------QQQQQPEDEFSQYRTQRSSQYR 349
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A7S3JU05_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU05_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.900e-9
Identity = 57/203 (28.08%), Postives = 89/203 (43.84%), Query Frame = 1 
Query:  145 LEKLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSRATLEQVHEERXXXXXXXXXXXXXXXXXXXXXXXXXXQNDRGRRNRDDGFGAGGSQQGLRAKQAQL--ELESDMQGREKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYR 747
            L  +PVG MA +L  +L  G   +KP+D   +P++  P IE  +L+ R+  FY    L++ H+ +                                    D F        L+ + A +    ++++ G    +G+EN+G  +L+ MGW EGTGLGS  +G  EPI+ +GQ+  D  GIG        +   A  D F  YR
Sbjct:   31 LASVPVGIMADVLSTALAAGHEPWKPLDTSKIPQFNPPIIESNQLEERIANFYRTVDLKRGHKRKADDHTIQQQQAPPQRRKYGPKI--------------DRFEL------LQREIAPMIPHKKTNING----IGDENVGKQMLRGMGWQEGTGLGSQGTGRAEPIADAGQS--DTVGIGS-------RPPGANSDVFSQYR 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A7S3YMK1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMK1_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.970e-6
Identity = 22/52 (42.31%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  154 LPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEFYSR 309
            +PVG +  +++V+L+ G R ++P+++K LP    PHIEPGRL+V V+++Y +
Sbjct:  293 VPVGVLVSLVKVALKAGHREYRPLNLKALPPAAPPHIEPGRLEVIVEQYYRK 344
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: UPI0009E3CE25 (calcium homeostasis endoplasmic reticulum protein-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E3CE25)

HSP 1 Score: 58.9 bits (141), Expect = 2.960e-6
Identity = 39/85 (45.88%), Postives = 49/85 (57.65%), Query Frame = 1 
Query:  532 EKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTD------AAEQDAFEAYRRNKSYSF 768
            E+ L E N+GH +LKKMGW EG GLG S+ G+ +PISG               G V+ K D      A  +D FEAYR++KSYSF
Sbjct:  756 EQRLDESNVGHQMLKKMGW-EGAGLGRSQQGIYDPISG---------------GEVRDKFDKFKGVGADMKDPFEAYRKSKSYSF 824
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A175YFJ2_DAUCS (G-patch domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YFJ2_DAUCS)

HSP 1 Score: 57.4 bits (137), Expect = 6.320e-6
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:  550 ENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGD-GSVKKKTDAAEQDAFEAYRRNKSYSFR 771
            +NIGH LL KMGW EG GLGSSRSG+ +PIS +G   +D  G+G    G VK      + D +E Y++     +R
Sbjct:  263 DNIGHKLLSKMGWKEGEGLGSSRSGIADPIS-AGNVKIDNLGVGASKPGEVK-----PDDDIYEQYKKRMMLGYR 331
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BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A6P8C1N5_PUNGR (SURP and G-patch domain-containing protein 1-like protein n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8C1N5_PUNGR)

HSP 1 Score: 57.4 bits (137), Expect = 7.420e-6
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  550 ENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYRRNKSYSFR 771
            +N+GH LL KMGW EG GLGSSRSG+ +PI  +G+   D  GIG    + K     AE D +E Y++     +R
Sbjct:  345 DNVGHRLLSKMGWKEGEGLGSSRSGIADPIM-AGEVKKDNLGIG----AQKPGEVTAEDDIYEQYKKRMMLGYR 413
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Match: A0A2B4SNZ9_STYPI (Calcium homeostasis endoplasmic reticulum protein n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SNZ9_STYPI)

HSP 1 Score: 57.4 bits (137), Expect = 9.520e-6
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:  532 EKVLGEENIGHNLLKKMGWSEGTGLGSSRSGMVEPISGSG-QASMDK-SGIGGGDGSVKKKTDAAEQDAFEAYRRNKSYSF 768
            E+ L E N+GH +LKKMGW EG GLG S  G+ +PISG   +   DK  G+G           A  +D FEAYR++KSYSF
Sbjct:  727 EQRLDESNVGHQMLKKMGW-EGAGLGRSMQGIQDPISGGEIRDKFDKFKGVG-----------ADMKDPFEAYRKSKSYSF 795
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1383.2280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV9_ECTSI1.180e-15193.05Calcium homeostasis endoplasmic reticulum protein ... [more]
A0A6H5J830_9PHAE2.030e-14798.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPB1_9STRA2.560e-2943.51Calcium homeostasis endoplasmic reticulum protein ... [more]
A0A8J2STI1_9STRA5.080e-1140.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JU05_9STRA1.900e-928.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3YMK1_HETAK1.970e-642.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI0009E3CE252.960e-645.88calcium homeostasis endoplasmic reticulum protein-... [more]
A0A175YFJ2_DAUCS6.320e-645.33G-patch domain-containing protein n=3 Tax=Daucus c... [more]
A0A6P8C1N5_PUNGR7.420e-644.59SURP and G-patch domain-containing protein 1-like ... [more]
A0A2B4SNZ9_STYPI9.520e-648.15Calcium homeostasis endoplasmic reticulum protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1383contigE-siliculosus-1a_F_contig1383:26611..31798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size780
Model size780
Exons7
Ec32 orthologEc-05_005330.1
Ec32 ortholog descriptionG-patch domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.A
EggNOG OGsKOG4368@1,KOG4368@2759
EggNOG free text desc.positive regulation of calcineurin-mediated signaling
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007204,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016528,GO:0016529,GO:0019725,GO:0023051,GO:0023056,GO:0030001,GO:0030003,GO:0031090,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033017,GO:0034220,GO:0034641,GO:0042127,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050848,GO:0050850,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051641,GO:0051649,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060401,GO:0060402,GO:0065007,GO:0065008,GO:0070013,GO:0070588,GO:0070838,GO:0070884,GO:0070886,GO:0071704,GO:0072503,GO:0072507,GO:0072511,GO:0090304,GO:0097553,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0106056,GO:0106058,GO:1901360,GO:1902531,GO:1902533
KEGG Pathwayko03040,map03040
KEGG koko:K12841
Preferred nameCHERP
Seed eggNOG ortholog2880.D8LFV9
Seed ortholog evalue8.4e-121
Seed ortholog score439.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927896.4543638-CDS-E-siliculosus-1a_F_contig1383:26610..267301622927896.4543638-CDS-E-siliculosus-1a_F_contig1383:26610..26730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 26611..26730 -
1696318727.9306743-CDS-E-siliculosus-1a_F_contig1383:26610..267301696318727.9306743-CDS-E-siliculosus-1a_F_contig1383:26610..26730Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 26611..26730 -
1622927896.47322-CDS-E-siliculosus-1a_F_contig1383:28162..282391622927896.47322-CDS-E-siliculosus-1a_F_contig1383:28162..28239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 28163..28239 -
1696318727.943149-CDS-E-siliculosus-1a_F_contig1383:28162..282391696318727.943149-CDS-E-siliculosus-1a_F_contig1383:28162..28239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 28163..28239 -
1622927896.4882853-CDS-E-siliculosus-1a_F_contig1383:28582..287281622927896.4882853-CDS-E-siliculosus-1a_F_contig1383:28582..28728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 28583..28728 -
1696318727.9530852-CDS-E-siliculosus-1a_F_contig1383:28582..287281696318727.9530852-CDS-E-siliculosus-1a_F_contig1383:28582..28728Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 28583..28728 -
1622927896.506255-CDS-E-siliculosus-1a_F_contig1383:29263..294181622927896.506255-CDS-E-siliculosus-1a_F_contig1383:29263..29418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 29264..29418 -
1696318727.9628577-CDS-E-siliculosus-1a_F_contig1383:29263..294181696318727.9628577-CDS-E-siliculosus-1a_F_contig1383:29263..29418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 29264..29418 -
1622927896.5248628-CDS-E-siliculosus-1a_F_contig1383:29865..299611622927896.5248628-CDS-E-siliculosus-1a_F_contig1383:29865..29961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 29866..29961 -
1696318727.9725363-CDS-E-siliculosus-1a_F_contig1383:29865..299611696318727.9725363-CDS-E-siliculosus-1a_F_contig1383:29865..29961Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 29866..29961 -
1622927896.5394793-CDS-E-siliculosus-1a_F_contig1383:30793..309261622927896.5394793-CDS-E-siliculosus-1a_F_contig1383:30793..30926Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 30794..30926 -
1696318727.9816241-CDS-E-siliculosus-1a_F_contig1383:30793..309261696318727.9816241-CDS-E-siliculosus-1a_F_contig1383:30793..30926Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 30794..30926 -
1622927896.5581145-CDS-E-siliculosus-1a_F_contig1383:31745..317981622927896.5581145-CDS-E-siliculosus-1a_F_contig1383:31745..31798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 31746..31798 -
1696318727.9915812-CDS-E-siliculosus-1a_F_contig1383:31745..317981696318727.9915812-CDS-E-siliculosus-1a_F_contig1383:31745..31798Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1383 31746..31798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1383.2280.1prot_E-siliculosus-1a_F_contig1383.2280.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1383 26611..31798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1383.2280.1

>prot_E-siliculosus-1a_F_contig1383.2280.1 ID=prot_E-siliculosus-1a_F_contig1383.2280.1|Name=mRNA_E-siliculosus-1a_F_contig1383.2280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=260bp
MPACHVQYPWRGALYPVMGKAQSVQSDNASKFPVAAGLASTAHGTDNMLE
KLPVGTMAGILRVSLRNGFRRFKPVDIKLLPKYVTPHIEPGRLDVRVDEF
YSRATLEQVHEERKKEKEQRKLEEERKLAGKEGGGGGGGQNDRGRRNRDD
GFGAGGSQQGLRAKQAQLELESDMQGREKVLGEENIGHNLLKKMGWSEGT
GLGSSRSGMVEPISGSGQASMDKSGIGGGDGSVKKKTDAAEQDAFEAYRR
NKSYSFRRF*
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mRNA from alignment at E-siliculosus-1a_F_contig1383:26611..31798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1383.2280.1 ID=mRNA_E-siliculosus-1a_F_contig1383.2280.1|Name=mRNA_E-siliculosus-1a_F_contig1383.2280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5188bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1383:26611..31798- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCGTGCCACGTGCAGTACCCCTGGCGGGGGGCGCTGTACCCGGT
GATGTGAGTTTTCGTGTGTGTGTGTGTGTTTTTTTTTCTTGTTTCGTTTT
GGTGTTTCTGGTGGTGTGTTACTGTTGGTTTCTCTATTTAATGGTTTTTT
ATGTTGTTTTTTTGGTCCCCTTTTTTTTTTTTTGCAGAGTTAGTTTTTGG
GTCGGCTGTTTCCGCCTTTGTGGCGTGGTGTTTCTGTTGGTTTCTACTAC
ACGGTAATTTCGTGTTGTCACATATGCATATGCGGTGTTTGCCGTTGGTT
GTCAGTACGTCCAAGCGGGAGTGAACTGGACGCGCTGCTCTTGTAACCCA
ACTGGCCGCTGTGCCACCTATTTTTTCTTGTTCTCGCCGATGCCAGTCGA
GAGTCGGGCACCTTCATGGTTGTTTTGGTGGTGGTGAGACTTGCGTTCTT
CACTTGCGTATTGTTCGTGTTCCATGCCTGTATGAGAAAGACGGTGGACA
AAAACGACGAGTAAAAACAAACACTCCCGTGTGTGTGTCTCCCTTCGGTG
TGATCCCGGCCGGTGCGTCCAATACGCACGCCGCAAGGGTGTGGTGCGAA
CTGGAAGTCACACACAACACAGCCGTGACCATGCGGCTGAAAGAGCATGG
TGCGGAGAAGGCCCTCACTTCTTGGTTGTCCCATGACGTTATTCGGTCAC
ATCGTTTCGCCTTTCGTTCGCAGAGGCAAGGTGTACTTGTACAAATCACA
CTTGCAGATAACAGTAAAACGACACGTAACGGAAGGGCACCACGTAGGTA
CAAGGTTGTTATTCGTCCCAAAACCTTGTTCGGCCACCCTGTTTTTTGCC
GGCGCCTTTCGGTGCTACGCAGGGGCAAGGCGCAGAGCGTTCAGAGCGAC
AACGCCAGCAAGTTCCCGGTGGCGGCAGGGCTGGCCAGCACGGCACACGG
GACGGATAACATGCTCGAGAAGCTGCCGGTTGGCACGATGGCGGGGATCC
TCAGGGTGAGCAGGCTTTACCTCAGCAGCGCAGGGGGAGAGGGGGGGGGG
GGGGGGGGGGGGGGGGCGGGGGGTGGGTACCCTCCCACATGCCGTCTCCA
TCTTTTTGAGAAACAAGAAGAANNNNNNNNNNGGGGCGGGGGGGGGCGGG
GGGGGGGGGCGGGGTGGTGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCAGCAGCTTGGC
TATGCACTACTCCACAATCGCTGCTACAACTTGGTTAGAAAACAGCGAAA
AAGGAAAAAAAACGTGGCGAGAAAGAAACAAGAGATATCAAGTGGTTGTT
GCCCGTTGCCCATTGCCCGGAAAGACGATTACTTCCTGGGTAGTTTTCCG
TGTAGTGTTTGCGTGTGGTGTGTCGGCCAGGGAGATGGGCGAGGGGAAGA
GCGAGCCATGACTGGCATTAGACCGATAGACAATCGCACATGCATATACT
GGAGACATGCGAACGATGCCATGAGTCGTCGTGGTGGGAGTGAAATAGTG
ACAGAGAGAGGCAGAGAGAGAGAGACAACAGGCAACAGAGGATGAGAGGG
GCAGCGGGCGGGCATGTGGGAGGGAGAGAAGCAAGTTGGTCCTCCGTTGC
TCAGGGGGTACCCTTACGTGTTGCGCCCCCGTTCACGTGTGGATCTGTTA
TTTCACGAGGCGGAACCAGACAAGCCACCACAGATTTCGCTGCACCACTG
CCCCCCGCATTGTCTGGTGATTTCACTTTTCCATCCATCTGTCTGATGCT
TTCGGTGCAAAATTGCTGTGACATGACATGTGCGTAGGTTTCTCTTCGGA
ATGGGTTCCGGAGATTCAAGCCGGTGGACATCAAGCTGCTGCCCAAGTAC
GTGACTCCTCACATCGAGCCCGGGAGACTAGACGTGAGTATTTCGATCCT
TGGCCCTTTTGGCTGATACGGAGCCCGTGCAGCATTCGAAACGTTTGCGG
GTTGCCACCATCGGGCGAGGTAGCGGTTTGGTCAACCGTTGTCAGCATCG
TGGTGGTCGTCGACGTCTTCTTTGTTCGAAAATATCGGCGTGAGTGTGAA
AGTCACGTTTACCGCCGGTGCTAGGGTTTCGGGTTGGCGATTTCCTTCAT
CACTCTCACTACCACATATTTTGCTGAGTGGTTGGAATTTTTTGTATTGT
TTTGTTGTCCGGTTGATTTGTCGTTTTCTTGCTAACCCTTGGCGCGTGGC
GTGTCTCGCGTGAGTGGAGACAAGTTTTATTTTTCTCATTTTCATGTTTC
GTTTCTATTTTGGCTTGTCTGTTATTCAACCCTCGCTGCGTCGCTTCTTG
TCTTTTGTTTTGCGCCCGGCCTAACAATAGGTCCGCGTGGATGAGTTCTA
TAGCCGGGCCACTCTCGAACAAGTGCACGAGGAGCGGAAGAAGGAGAAGG
AGCAGAGAAAACTGGAAGAAGAGAGGAAACTCGCGGGGAAAGAAGGCGGC
GGGGGCGGCGGCGGGCAAAACGACAGGGGCCGAAGGTACGGTACACAGCG
GAAGTAGTCAGTTGGCATCCCGTCACTGCGGTCTATAACGGATTGTTTCT
TTAGAGTGGTTCTGGTTTTGACGGAACCGCTGACTCCCTTGCAAACGTTT
GCGGTTCTCCAGCAAGATCCCTTTACCTATGTAGTGTGCTTACCTTGGGC
ATCAAAACCGAAGAATGAACAATACAACCTTTTTTTTTTATCGCTTTGTT
CCATTCACCAATCTCGAACAAACAACTGCAACACCTCGATTTTTCCATCC
CCAGCGTGTGTGGGGGGGTTTGGAGTGCTCTGTGGTGGTGGTAACGTCCG
CGTCAGTTTAAAGCAGCGAGTATTCTGGGCCGGTCTCCGGTGTGCCGCCA
GACCACACGGTTTCCTCGCGGTCAACTCGTGCAAGAGTCTGGGCACAAAT
AGCGCCTTTCCTTAACAGATAGTTTACATGCAAACACAGAAAGACTTGCA
CACCCGTTCTTACAATATATGTTATTTTTCACGGTGAAACTGCTTTTGCC
TGTGGCTTCGTTTTGTGCAGGAATCGGGACGACGGGTTCGGGGCCGGAGG
CAGCCAGCAAGGCCTTCGGGCGAAGCAGGCGCAGCTTGAGCTCGAGAGCG
ACATGCAGGGCAGGGAAAAGGTTCTGGGCGAGGAGAACATCGGCCACAAC
CTCCTCAAGAAGATGGGTGAGTTGGTCGTCGTTAGTTTGTTTGTTGTTGT
TGTTGTTGTTGTCGGTCTTCATTTGTTTGTTTGTTTGTTTGTTTGGTGTG
GTTGTTGTTGTTGTGGTTGTTGCTGTTGTCGAGTTTGCTGCTGCTGCTGC
TGTTGTTGTGTTGTTGATGTTGATGTTGGAGCGGTAATTGCCTCTGTTGT
TGCCGTTGATGTTGTTGCTGTTGTGTCTGCTCTTGCTTGTGTTGGGTGTG
CATGTTGCTGCTGAACTACCGGGCACTCGATTGGCCTCAACCACTTTTTA
ACTCTTCTCATGATGACCGGCCGTGTCGCTCGTCGTTGACCCTCATGACG
TCATGACAGGATGGAGCGAAGGCACCGGCCTCGGCTCGTCAAGGTCAGGC
ATGGTGGAACCCATCTCCGGCTCCGGCCAGGCAAGTGTCAAATCAATCAA
GAGCTGCCTGCTGGTTGGCCAACCCGCTCTTTTTCATGTGTTGTTGTTTG
TTTCCTTCGCATCGAAGCAGCACTGGGGTGTGGCCAGCGGTCTTTGGTCT
CGGTCGTTGTTGACGTTTGGTTTGGTCTACATGCCAGTGTTTTTTTTTTT
TTTTGTGGACATGTGTTTTACGGCATGTTGTTGTGCCTGCGCGAAGAGGT
TGGAGGCCTCAGGTCTTGAGAGCGTTTGTGTGTGTTTCTACCATCGGTCG
TTCGACCAAGTGAGTACTCGTTGCTTGCGAGAGGTGTCATCAACGGTTTG
TTGCCAACCTGTCACCCACACATCGCACGGATTCGACCGTGTATGTACAT
GTAAGATTTGGTCACTTTTCATGCTTCGGCGTTTCTTTCTCTCGCGGCAG
CGAGTCTTTTCTCGTGGTTCCTTCTCAGGGGCACTCAGGAGGCTCGTCGG
TACATTAACGCCCGTGCCCGGAGCTCGGTAGGCCTCCGTGACGCGTGTGG
TTGACGGCCAAAGTTGCGAAAACTGGCTCAAAACCCCGGGGACGCGTTCC
GTGCTGACAAAGCCTGGCGAACCAATTCTGAAACCTATCAAACCCATCAA
ATACGACGGTTTGAAATATTTGCCTCTGCTTCTCCACTATTATTCGTTCA
TTAATTAATTCATTCGATGATTCATGGCTGTGACTCTTCGTGTCATCGCA
TGGTCCAACAGCAGTACCTACGTTTACTACAATAGGGTCAAGTGTAAACA
AGTCTGAGAGCATGCACCCAGCCGCAGTGTTGAACATGTTCCGTTTGTGG
TGTTGTCGTTTCGGCTTCAAATAAATTCGGTTCTTATCGGAAATCTGCCA
TCATCAATCAAAGACATCATCTCAGTTGTCGCTGCCAAAATATCGTCCGC
TCGAGCTGACTCAATGTAGAATAACAACGTGCGCGATGTTTTGTGCGGAA
ATACAAGCAAGCGTTGTAAGACACACAGTCCCTCTTCGGGCAATGCGCAT
GTGATCTTGCGTCACCTGAGGGAGGGTAGACACCCACGTCCCGAAGGGAT
ACCTTGTAACTTGTAGTTTATGACTGCATTCGTGCCGCGACCCTCCATGT
AAGAGGGAATATCGTGTCCAGCCAGGGTCTCCTCGGTGTTAGGGTCATCA
GACCGTTCCTTCCATGTGCACGCCGGATGACTGCTACCGCAGGTGTTGCC
ACTTGTTGCCTTCACTTTAAGAAACCTTAGCGGTCGTTGCTCAGTACCTT
CGAAAATCCGCACCCGTCCAACTGACGCGGACGCCTCCCATGGCCACAGC
CCAAACTACATCCAAGAAGGGCATGAACCTCTGAAAAGCAAAACGAGAAA
AGTGGGCCCTGAGAAATTCATCCAAACACGGTTGGTTTTGACTTGTTTTG
GCCCTTTTTGTTTTGCAGATGGACAAGTCGGGCATCGGGGGAGGGGACGG
CAGCGTCAAGAAGAAGACGGATGCAGCGGAACAGGATGCCTTCGAGGCCT
ACCGACGAAACAAGAGCTACTCGTTTCGCAGATTCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1383:26611..31798-

>mRNA_E-siliculosus-1a_F_contig1383.2280.1 ID=mRNA_E-siliculosus-1a_F_contig1383.2280.1|Name=mRNA_E-siliculosus-1a_F_contig1383.2280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1383:26611..31798- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCGTGCCACGTGCAGTACCCCTGGCGGGGGGCGCTGTACCCGGT
GATATGCCCGCGTGCCACGTGCAGTACCCCTGGCGGGGGGCGCTGTACCC
GGTGATGGGCAAGGCGCAGAGCGTTCAGAGCGACAACGCCAGCAAGTTCC
CGGTGGCGGCAGGGCTGGCCAGCACGGCACACGGGACGGATAACATGCTC
GAGAAGCTGCCGGTTGGCACGATGGCGGGGATCCTCAGGGGGCAAGGCGC
AGAGCGTTCAGAGCGACAACGCCAGCAAGTTCCCGGTGGCGGCAGGGCTG
GCCAGCACGGCACACGGGACGGATAACATGCTCGAGAAGCTGCCGGTTGG
CACGATGGCGGGGATCCTCAGGGTTTCTCTTCGGAATGGGTTCCGGAGAT
TCAAGCCGGTGGACATCAAGCTGCTGCCCAAGTACGTGACTCCTCACATC
GAGCCCGGGAGACTAGACGTTTCTCTTCGGAATGGGTTCCGGAGATTCAA
GCCGGTGGACATCAAGCTGCTGCCCAAGTACGTGACTCCTCACATCGAGC
CCGGGAGACTAGACGTCCGCGTGGATGAGTTCTATAGCCGGGCCACTCTC
GAACAAGTGCACGAGGAGCGGAAGAAGGAGAAGGAGCAGAGAAAACTGGA
AGAAGAGAGGAAACTCGCGGGGAAAGAAGGCGGCGGGGGCGGCGGCGGGC
AAAACGACAGGGGCCGAAGGTCCGCGTGGATGAGTTCTATAGCCGGGCCA
CTCTCGAACAAGTGCACGAGGAGCGGAAGAAGGAGAAGGAGCAGAGAAAA
CTGGAAGAAGAGAGGAAACTCGCGGGGAAAGAAGGCGGCGGGGGCGGCGG
CGGGCAAAACGACAGGGGCCGAAGGAATCGGGACGACGGGTTCGGGGCCG
GAGGCAGCCAGCAAGGCCTTCGGGCGAAGCAGGCGCAGCTTGAGCTCGAG
AGCGACATGCAGGGCAGGGAAAAGGTTCTGGGCGAGGAGAACATCGGCCA
CAACCTCCTCAAGAAGATGGGAATCGGGACGACGGGTTCGGGGCCGGAGG
CAGCCAGCAAGGCCTTCGGGCGAAGCAGGCGCAGCTTGAGCTCGAGAGCG
ACATGCAGGGCAGGGAAAAGGTTCTGGGCGAGGAGAACATCGGCCACAAC
CTCCTCAAGAAGATGGGATGGAGCGAAGGCACCGGCCTCGGCTCGTCAAG
GTCAGGCATGGTGGAACCCATCTCCGGCTCCGGCCAGGCAAGTGATGGAG
CGAAGGCACCGGCCTCGGCTCGTCAAGGTCAGGCATGGTGGAACCCATCT
CCGGCTCCGGCCAGGCAAGTATGGACAAGTCGGGCATCGGGGGAGGGGAC
GGCAGCGTCAAGAAGAAGACGGATGCAGCGGAACAGGATGCCTTCGAGGC
CTACCGACGAAACAAGAGCTACTCGTTTCGCAGATTCTAAATGGACAAGT
CGGGCATCGGGGGAGGGGACGGCAGCGTCAAGAAGAAGACGGATGCAGCG
GAACAGGATGCCTTCGAGGCCTACCGACGAAACAAGAGCTACTCGTTTCG
CAGATTCTAA
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