mRNA_E-siliculosus-1a_F_contig1382.2275.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1382.2275.1
Unique NamemRNA_E-siliculosus-1a_F_contig1382.2275.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1382.2275.1 vs. uniprot
Match: D7FP18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP18_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 3.390e-64
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 1 
Query:    4 ALARRSTLLLTTELATTKEEYDMDKSTLLMKLVAAEKATEEAESKINAIVAADRQLRASKLELSSANKAMANAEAGLRRKRNPIFSAAETVEFMQADDHSCTGALHSTEYMTHEMCRIVNIFNKMNGHIIQ 396
            ALARR+TLLLTTELATT EEY+MD+STLL KLVAAEKATEEAESK+ AIVAADRQLRASKLELSSANKAMANAEA LR KRNPIFSAAETVEF Q +DHSCT ALHST+YM HE+C IVNIFNKM GHII+
Sbjct:    7 ALARRNTLLLTTELATTNEEYNMDRSTLLTKLVAAEKATEEAESKLKAIVAADRQLRASKLELSSANKAMANAEAELRGKRNPIFSAAETVEFTQVNDHSCTRALHSTKYMAHEICIIVNIFNKMIGHIIE 137
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1382.2275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP18_ECTSI3.390e-6485.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1382contigE-siliculosus-1a_F_contig1382:6268..7325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size432
Model size433
Exons3
Ec32 orthologEc-05_001750.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1382.2275.1prot_E-siliculosus-1a_F_contig1382.2275.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1382 6269..7325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927895.4627132-CDS-E-siliculosus-1a_F_contig1382:6268..64121622927895.4627132-CDS-E-siliculosus-1a_F_contig1382:6268..6412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 6269..6412 -
1696318727.3322308-CDS-E-siliculosus-1a_F_contig1382:6268..64121696318727.3322308-CDS-E-siliculosus-1a_F_contig1382:6268..6412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 6269..6412 -
1622927895.478241-CDS-E-siliculosus-1a_F_contig1382:6683..68841622927895.478241-CDS-E-siliculosus-1a_F_contig1382:6683..6884Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 6684..6884 -
1696318727.3448248-CDS-E-siliculosus-1a_F_contig1382:6683..68841696318727.3448248-CDS-E-siliculosus-1a_F_contig1382:6683..6884Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 6684..6884 -
1622927895.4938133-CDS-E-siliculosus-1a_F_contig1382:7238..73251622927895.4938133-CDS-E-siliculosus-1a_F_contig1382:7238..7325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 7239..7325 -
1696318727.3615582-CDS-E-siliculosus-1a_F_contig1382:7238..73251696318727.3615582-CDS-E-siliculosus-1a_F_contig1382:7238..7325Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1382 7239..7325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1382.2275.1

>prot_E-siliculosus-1a_F_contig1382.2275.1 ID=prot_E-siliculosus-1a_F_contig1382.2275.1|Name=mRNA_E-siliculosus-1a_F_contig1382.2275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
KALARRSTLLLTTELATTKEEYDMDKSTLLMKLVAAEKATEEAESKINAI
VAADRQLRASKLELSSANKAMANAEAGLRRKRNPIFSAAETVEFMQADDH
SCTGALHSTEYMTHEMCRIVNIFNKMNGHIIQVTGRAIPPCAIS
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mRNA from alignment at E-siliculosus-1a_F_contig1382:6268..7325-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1382.2275.1 ID=mRNA_E-siliculosus-1a_F_contig1382.2275.1|Name=mRNA_E-siliculosus-1a_F_contig1382.2275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1058bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1382:6268..7325- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGCCTTGGCAAGGAGAAGCACCCTTCTGCTGACCACTGAACTAGCCAC
TACCAAGGAAGAATACGACATGGACAAATCGACCTTGGTGAGTCAATAAC
ATGGCGATGTATTTCGCCGTGAATGAATATAATGTAGCAAGACTGAGACT
TCACTCGACAATGCAGCAAATCACAAGGACATTCTCCACGCCATGGAGAA
TCGATGTTCGTCGAATAGGAATCCACCAGCAGTGGTCGCGTGCAAAGATT
TTCATCGGCCTCGGGAGTCCCTCTCCGCCAACACTCTAGAATGAACGCAA
GCACGTCGGTGACAGTTTGATGTTGGTGACTAGAGTGAACACAAGGACAA
GGTCGGGGATAATTTGATGTTGGAATTACAATTGCTTCATACATCTTCAC
TCCGACAATCACCAAATCGTTTTCCATCATTTTTCTTACAGCTGATGAAG
CTCGTTGCGGCGGAGAAAGCCACGGAAGAGGCGGAATCCAAGATAAATGC
CATCGTGGCAGCTGACAGGCAACTCCGCGCTTCCAAGCTTGAACTGAGCT
CCGCCAACAAGGCGATGGCCAATGCAGAGGCAGGGCTTCGGAGGAAGAGG
AACCCAATCTTCTCTGCGGCGGAGACTGTGGAATTCATGCAGGTGACACG
AGTATACACCGATTTTGTGCTCGTGATTTTGATGTGTAGAAGAAAGTCCG
CTATTCGAGGAAATGGTACCCTGCCTTTGTGCGCGTGGTCGTAACGGAGA
TGCCCGGAGAGTTTGCAGTACAGGTGCGGCCAATTGTCCCCACAGTCGGG
CGCGTAGACACGCCTCGAACGTGATGTTCTGCGGGCCAACACGCACGATG
TTGGTGCCCTTGCAACTCTTACTCGTCACACTTTTTGGGTGCGCGATGGC
CTCTGCATGGCAGGCGGACGATCATTCTTGCACGGGGGCACTGCACTCCA
CCGAGTATATGACGCACGAAATGTGTAGAATAGTGAACATATTCAACAAG
ATGAATGGCCACATCATTCAAGTAACTGGTAGAGCAATTCCTCCCTGTGC
GATCTCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1382:6268..7325-

>mRNA_E-siliculosus-1a_F_contig1382.2275.1 ID=mRNA_E-siliculosus-1a_F_contig1382.2275.1|Name=mRNA_E-siliculosus-1a_F_contig1382.2275.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1382:6268..7325- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGCCTTGGCAAGGAGAAGCACCCTTCTGCTGACCACTGAACTAGCCAC
TACCAAGGAAGAATACGACATGGACAAATCGACCTTGAAGGCCTTGGCAA
GGAGAAGCACCCTTCTGCTGACCACTGAACTAGCCACTACCAAGGAAGAA
TACGACATGGACAAATCGACCTTGCTGATGAAGCTCGTTGCGGCGGAGAA
AGCCACGGAAGAGGCGGAATCCAAGATAAATGCCATCGTGGCAGCTGACA
GGCAACTCCGCGCTTCCAAGCTTGAACTGAGCTCCGCCAACAAGGCGATG
GCCAATGCAGAGGCAGGGCTTCGGAGGAAGAGGAACCCAATCTTCTCTGC
GGCGGAGACTGTGGAATTCATGCAGCTGATGAAGCTCGTTGCGGCGGAGA
AAGCCACGGAAGAGGCGGAATCCAAGATAAATGCCATCGTGGCAGCTGAC
AGGCAACTCCGCGCTTCCAAGCTTGAACTGAGCTCCGCCAACAAGGCGAT
GGCCAATGCAGAGGCAGGGCTTCGGAGGAAGAGGAACCCAATCTTCTCTG
CGGCGGAGACTGTGGAATTCATGCAGGCGGACGATCATTCTTGCACGGGG
GCACTGCACTCCACCGAGTATATGACGCACGAAATGTGTAGAATAGTGAA
CATATTCAACAAGATGAATGGCCACATCATTCAAGTAACTGGTAGAGCAA
TTCCTCCCTGTGCGATCTCCGCGGACGATCATTCTTGCACGGGGGCACTG
CACTCCACCGAGTATATGACGCACGAAATGTGTAGAATAGTGAACATATT
CAACAAGATGAATGGCCACATCATTCAAGTAACTGGTAGAGCAATTCCTC
CCTGTGCGATCTCC
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