mRNA_E-siliculosus-1a_F_contig1381.2270.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: D7G615_ECTSI (Alternative oxidase isoform A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G615_ECTSI) HSP 1 Score: 325 bits (834), Expect = 7.740e-106 Identity = 172/183 (93.99%), Postives = 172/183 (93.99%), Query Frame = 3
Query: 66 MLRGTTSRLALRLNPEFRRQLATGMVISFDNHQHRFFSSSSEGADDANRQLGGTARARATRREFATKKEIGKGLEEEKIRPGDRSQVHFRATPTKHPLGMGSPKNS-VSSEAGGRSSGEKGKKGKEWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
MLRGTTSRLALRL PEFRRQLATGMVIS DNHQHRFFSSSSE ADDANRQLGGT R TRREFATKKEIGKGLEEEKIRPGDRSQVHFRATPTKHPLGMGSPKNS VSSE GGRSSG KGKKGKEWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRW FDVLAGFKTGVIDEHK
Sbjct: 1 MLRGTTSRLALRLTPEFRRQLATGMVISCDNHQHRFFSSSSEAADDANRQLGGTVRT--TRREFATKKEIGKGLEEEKIRPGDRSQVHFRATPTKHPLGMGSPKNSSVSSEGGGRSSGGKGKKGKEWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWFFDVLAGFKTGVIDEHK 181
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: A0A6H5KXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL8_9PHAE) HSP 1 Score: 327 bits (839), Expect = 1.120e-104 Identity = 176/210 (83.81%), Postives = 180/210 (85.71%), Query Frame = 3
Query: 66 MLRGTTSRLALRLNPEFRRQLATGMVISFDNHQHRFFSSSSEGADDANRQLGGTARARATRREFATKKEIGKGLEEEKIRPGDRSQVHFRATPTKHPLGMGSPKNSVSSEAGGRSSGEKGKKGKEWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHKCEFATVVQLKVSSEFFRSGNPGVTPVKS 695
MLRGTTSRLALRL PEFRRQLATGMVISFDNHQHRF S SSE ADDANRQLGGT RA TRR FATKKEIGKGLEEE+IRPGDRSQVHFRATPTKHPLGMG PKNS SGEKGKK KEWSMPH IWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRW FDVLAGFKTGVIDEHKC +T VQLK SSEF RS NP V P ++
Sbjct: 1 MLRGTTSRLALRLTPEFRRQLATGMVISFDNHQHRFLSCSSEAADDANRQLGGTVRA--TRRAFATKKEIGKGLEEEEIRPGDRSQVHFRATPTKHPLGMGLPKNS---------SGEKGKKEKEWSMPHGIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWCFDVLAGFKTGVIDEHKCA-STTVQLKFSSEFLRSRNPRVNPSRA 198
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: L1JLI9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLI9_GUITC) HSP 1 Score: 71.2 bits (173), Expect = 1.430e-10 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 3
Query: 447 MPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
M H +W+ EEVNSIK THK PE+ VD +AL V+A RWSFD +G++ G + E K
Sbjct: 1 MQHSVWTEEEVNSIKKTHKKPEDMVDRVALAAVKAARWSFDTFSGYRFGNLTEGK 55
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: A0A7S0EDZ8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EDZ8_9CRYP) HSP 1 Score: 67.0 bits (162), Expect = 9.610e-9 Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 3
Query: 324 VHFRATPTKHPLGMGSPKNSVSSEAGGRSSGEKGKKGKEWSMP--HEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
VHF+ +P +H LG+ V+ E W P H +W+ EEV +K TH DP + D +AL V+A RW+FD L+G+K G + E K
Sbjct: 48 VHFKTSPNRHSLGV----QKVNKEQD------------VWDNPFQHSVWTEEEVYGVKKTHVDPLDRADTLALSAVKAARWTFDTLSGYKIGNVTERK 129
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: A0A836CI40_9STRA (Alternative oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI40_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.040e-8 Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 3
Query: 438 EWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
EW++ +WS EE++ +K TH+DP + D IAL+ VR RW+FD +AGFKTG I E K
Sbjct: 89 EWTVDS-VWSREELHGVKVTHRDPTDIADKIALKAVRFCRWTFDWVAGFKTGSITEDK 145
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: L1K030_GUITC (Uncharacterized protein n=3 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K030_GUITC) HSP 1 Score: 62.8 bits (151), Expect = 1.140e-7 Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 3
Query: 447 MPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
M H +W+ EEVN ++ TH+ E+ VD +A GV+ RWSFD +GF+ G + E K
Sbjct: 1 MHHSVWTDEEVNGVRKTHRPMEDFVDRLAFSGVKLCRWSFDTFSGFRFGELTESK 55
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: K1QRC6_CRAGI (Alternative oxidase, mitochondrial n=7 Tax=Crassostrea TaxID=6564 RepID=K1QRC6_CRAGI) HSP 1 Score: 62.8 bits (151), Expect = 1.910e-7 Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 3
Query: 447 MPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
+PH IWS EE++S+K THK PE VD +A R V+ LR +FD+L GF G E K
Sbjct: 72 LPHPIWSEEELHSVKVTHKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERTEKK 126
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: A0A8B8CGJ8_CRAVI (alternative oxidase, mitochondrial-like isoform X2 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CGJ8_CRAVI) HSP 1 Score: 62.0 bits (149), Expect = 4.040e-7 Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 3
Query: 447 MPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
+PH IWS EE++++K THK PE VD +A R V+ LR +FD+L GF G E K
Sbjct: 99 LPHPIWSEEELHNVKVTHKPPEGFVDKLAFRSVKLLRSTFDLLTGFNWGERSEKK 153
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: W7TTV4_9STRA (Alternative oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTV4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.360e-7 Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 3
Query: 288 EEEKIRPGDRSQVHFRATPTKHPLGMGSPKNSVSSEAGGRSSGEKGKKGKEWSMP--HEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFK 587
E+E++R G RS +HF+ +P +H L + PK K K W P H +W+ EEV +++ TH P + +A + LR+SFDVLAGFK
Sbjct: 78 EKEELRDGARSIIHFKLSPNRHALNV--PKLDP--------------KEKVWENPTHHSVWTKEEVENVEVTHLPPADWTSRVAYTIAQTLRFSFDVLAGFK 163
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Match: A0A8B7YC75_ACAPL (alternative oxidase, mitochondrial-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YC75_ACAPL) HSP 1 Score: 60.8 bits (146), Expect = 1.210e-6 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 3
Query: 417 EKGKKGKEWSMPHEIWSAEEVNSIKPTHKDPEEAVDHIALRGVRALRWSFDVLAGFKTGVIDEHK 611
E G+ + + +PH IWS +E++S++ THK P+ VD A V+ LR+SFD+L+G+K GV E K
Sbjct: 147 ENGEDSRRYLLPHPIWSDKELHSVEITHKPPQGFVDWFAYTCVQTLRFSFDLLSGYKRGVRTEKK 211 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1381.2270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1381.2270.1 >prot_E-siliculosus-1a_F_contig1381.2270.1 ID=prot_E-siliculosus-1a_F_contig1381.2270.1|Name=mRNA_E-siliculosus-1a_F_contig1381.2270.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=264bp MLRGTTSRLALRLNPEFRRQLATGMVISFDNHQHRFFSSSSEGADDANRQback to top mRNA from alignment at E-siliculosus-1a_F_contig1381:30345..32232- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1381.2270.1 ID=mRNA_E-siliculosus-1a_F_contig1381.2270.1|Name=mRNA_E-siliculosus-1a_F_contig1381.2270.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1888bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1381:30345..32232- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1381:30345..32232- >mRNA_E-siliculosus-1a_F_contig1381.2270.1 ID=mRNA_E-siliculosus-1a_F_contig1381.2270.1|Name=mRNA_E-siliculosus-1a_F_contig1381.2270.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1584bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1381:30345..32232- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |