mRNA_E-siliculosus-1a_F_contig138.2263.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig138.2263.1
Unique NamemRNA_E-siliculosus-1a_F_contig138.2263.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig138.2263.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.200e-13
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:  265 VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGSNTGGA 381
            VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGSNTGGA
Sbjct: 1292 VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGSNTGGA 1330
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BLAST of mRNA_E-siliculosus-1a_F_contig138.2263.1 vs. uniprot
Match: A0A6H5KUI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.510e-13
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:  265 VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGSNTGGA 381
            VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGS+TGGA
Sbjct:  264 VSEEELFAPLRSGLPSTDTPVRIPTATARPSAGSSTGGA 302
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig138.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1J2_ECTSI2.200e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUI1_9PHAE6.510e-1397.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig138contigE-siliculosus-1a_F_contig138:75988..76705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size456
Model size459
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC3.6.4.13
EggNOG OGsCOG1643@1,KOG0920@2759
EggNOG free text desc.helicase activity
KEGG koko:K13026
Seed eggNOG ortholog2880.D7G1J2
Seed ortholog evalue6.4e-12
Seed ortholog score77.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.4787602-CDS-E-siliculosus-1a_F_contig138:75989..763791622927892.4787602-CDS-E-siliculosus-1a_F_contig138:75989..76379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 75990..76379 -
1696318725.9596775-CDS-E-siliculosus-1a_F_contig138:75989..763791696318725.9596775-CDS-E-siliculosus-1a_F_contig138:75989..76379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 75990..76379 -
1622927892.493241-CDS-E-siliculosus-1a_F_contig138:76639..767051622927892.493241-CDS-E-siliculosus-1a_F_contig138:76639..76705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 76640..76705 -
1696318725.9709964-CDS-E-siliculosus-1a_F_contig138:76639..767051696318725.9709964-CDS-E-siliculosus-1a_F_contig138:76639..76705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 76640..76705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig138.2263.1prot_E-siliculosus-1a_F_contig138.2263.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig138 75990..76705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig138.2263.1

>prot_E-siliculosus-1a_F_contig138.2263.1 ID=prot_E-siliculosus-1a_F_contig138.2263.1|Name=mRNA_E-siliculosus-1a_F_contig138.2263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
GSGGGYGRQQQQQHGRQGQHEQTTASETDQKQLRIMQRREQEDAVRRSAV
PAGGHASFNRSSNGGGGNGSSGGGGAAASRSRDTTGGGVSEEELFAPLRS
GLPSTDTPVRIPTATARPSAGSNTGGAGGGRGDRYRDDNDGQGGRGRRGG
GG
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mRNA from alignment at E-siliculosus-1a_F_contig138:75988..76705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig138.2263.1 ID=mRNA_E-siliculosus-1a_F_contig138.2263.1|Name=mRNA_E-siliculosus-1a_F_contig138.2263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=718bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:75988..76705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGTGGCGGCGGCTACGGGAGGCAGCAGCAGCAACAGCATGGCCGACA
GGGTCAGCACGAACAGGTAGTGATGGTATCGGCAACGCCTTACTAGTTCT
AAGGAGTGCTTGGTATTGATATTTTTTGTTGCTTTCGGACCACCCGCCTG
GGTTCTCAACAAGCTCGAGTTCGGACCATCACCCACCTGCGATCTAAACA
AGGCCGAGTTCATCGCTGCTGACAATTTTGTTTTCTCGTAATGTCATTTT
TGGTGCCCATTCACCTGTTTTTGTTCTTTTGCCCGTCCGTCGTCTTTGTC
ATTGGATTTGATTTTTTTTCATGTAGACCACGGCTTCGGAGACAGACCAG
AAACAGCTGCGAATCATGCAGCGCCGCGAGCAGGAAGACGCGGTTCGCCG
AAGCGCCGTTCCAGCCGGCGGACATGCCAGCTTCAACCGCAGCAGCAACG
GCGGCGGCGGTAACGGCTCCAGCGGCGGCGGCGGCGCAGCGGCTTCGAGG
TCGAGGGACACGACGGGCGGCGGGGTCAGCGAGGAGGAGCTGTTCGCGCC
CCTTCGGTCCGGCCTCCCCTCCACCGACACGCCCGTCCGCATCCCAACGG
CAACCGCCAGGCCGTCGGCAGGGAGCAATACCGGAGGTGCAGGAGGCGGC
CGGGGCGATCGGTATCGTGACGACAATGACGGCCAAGGTGGTCGGGGACG
CAGGGGCGGTGGTGGCGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig138:75988..76705-

>mRNA_E-siliculosus-1a_F_contig138.2263.1 ID=mRNA_E-siliculosus-1a_F_contig138.2263.1|Name=mRNA_E-siliculosus-1a_F_contig138.2263.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:75988..76705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGAGTGGCGGCGGCTACGGGAGGCAGCAGCAGCAACAGCATGGCCGACA
GGGTCAGCACGAACAGGGGAGTGGCGGCGGCTACGGGAGGCAGCAGCAGC
AACAGCATGGCCGACAGGGTCAGCACGAACAGACCACGGCTTCGGAGACA
GACCAGAAACAGCTGCGAATCATGCAGCGCCGCGAGCAGGAAGACGCGGT
TCGCCGAAGCGCCGTTCCAGCCGGCGGACATGCCAGCTTCAACCGCAGCA
GCAACGGCGGCGGCGGTAACGGCTCCAGCGGCGGCGGCGGCGCAGCGGCT
TCGAGGTCGAGGGACACGACGGGCGGCGGGGTCAGCGAGGAGGAGCTGTT
CGCGCCCCTTCGGTCCGGCCTCCCCTCCACCGACACGCCCGTCCGCATCC
CAACGGCAACCGCCAGGCCGTCGGCAGGGAGCAATACCGGAGGTGCAGGA
GGCGGCCGGGGCGATCGGTATCGTGACGACAATGACGGCCAAGGTGGTCG
GGGACGCAGGGGCGGTGGTGGCACCACGGCTTCGGAGACAGACCAGAAAC
AGCTGCGAATCATGCAGCGCCGCGAGCAGGAAGACGCGGTTCGCCGAAGC
GCCGTTCCAGCCGGCGGACATGCCAGCTTCAACCGCAGCAGCAACGGCGG
CGGCGGTAACGGCTCCAGCGGCGGCGGCGGCGCAGCGGCTTCGAGGTCGA
GGGACACGACGGGCGGCGGGGTCAGCGAGGAGGAGCTGTTCGCGCCCCTT
CGGTCCGGCCTCCCCTCCACCGACACGCCCGTCCGCATCCCAACGGCAAC
CGCCAGGCCGTCGGCAGGGAGCAATACCGGAGGTGCAGGAGGCGGCCGGG
GCGATCGGTATCGTGACGACAATGACGGCCAAGGTGGTCGGGGACGCAGG
GGCGGTGGTGGC
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