mRNA_E-siliculosus-1a_F_contig138.2259.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig138.2259.1
Unique NamemRNA_E-siliculosus-1a_F_contig138.2259.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig138.2259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig138contigE-siliculosus-1a_F_contig138:43164..44725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size240
Model size242
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig138.2259.1prot_E-siliculosus-1a_F_contig138.2259.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig138 43164..44725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.8886867-CDS-E-siliculosus-1a_F_contig138:43163..431841622927892.8886867-CDS-E-siliculosus-1a_F_contig138:43163..43184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 43164..43184 +
1696318726.1288853-CDS-E-siliculosus-1a_F_contig138:43163..431841696318726.1288853-CDS-E-siliculosus-1a_F_contig138:43163..43184Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 43164..43184 +
1622927892.9041748-CDS-E-siliculosus-1a_F_contig138:43944..440431622927892.9041748-CDS-E-siliculosus-1a_F_contig138:43944..44043Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 43945..44043 +
1696318726.1385818-CDS-E-siliculosus-1a_F_contig138:43944..440431696318726.1385818-CDS-E-siliculosus-1a_F_contig138:43944..44043Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 43945..44043 +
1622927892.9225523-CDS-E-siliculosus-1a_F_contig138:44605..447251622927892.9225523-CDS-E-siliculosus-1a_F_contig138:44605..44725Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 44606..44725 +
1696318726.147913-CDS-E-siliculosus-1a_F_contig138:44605..447251696318726.147913-CDS-E-siliculosus-1a_F_contig138:44605..44725Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig138 44606..44725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig138.2259.1

>prot_E-siliculosus-1a_F_contig138.2259.1 ID=prot_E-siliculosus-1a_F_contig138.2259.1|Name=mRNA_E-siliculosus-1a_F_contig138.2259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=80bp
KQQRLNNNGQQQQQGCQAAPKTRLRFRGVFGCVYLGEAMKVLAAAAVLVH
LPACLVRGYTAIPPPSLTRGGLSARAAGAG
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mRNA from alignment at E-siliculosus-1a_F_contig138:43164..44725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig138.2259.1 ID=mRNA_E-siliculosus-1a_F_contig138.2259.1|Name=mRNA_E-siliculosus-1a_F_contig138.2259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1562bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:43164..44725+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGCAACAACGCCTAAACAACGTGGGTTCCAGTACCTGTACTCGGCCTGC
TGTAGGATGATGCAGCGTCATTCGAATTGACGCACGGAAAGAAGAACGGC
TACAATGTAACCAGGATGTGAGGCATTCTGTTGTAAACAGCTGCGGGACA
CCTACCGTAAACTACACAAGATAACACACCCCGTGTCCTTTTTGCATTCC
GTATAGCTCCACAACCAGGAGGGTGCCACTGCCGAAAAGGGTGGTTTTGG
AATGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTTTGGTGTTCGCACC
CTCCTGGTTGTGGAGCAATACGGAATGCAAAAAGCCTAACACGGGGTGTG
TTATCTCGTGTAGTTTACGGTAAGCACGACGCCTGCGCGTGGATGCCGTT
TTTCCCACAAGTCAGTACTCACTGCCGGCTACGTTGCACATCTCTCAGCA
AGGTTTGGGCTTCTTCCTCTCCACCCATCAAGCATTATACGCCTTCGTGC
CAAGTTTCGTGCATAGTGTACAGCGAGTTCTTGCCTCTTCTGTCTTCGAT
TGAAAGCACCGTCGGGTCGGTTGAGGTTCCGCCGCGTTTTCGGGGGCTTT
GACTGCTGAGTTTTAGTGCTGTGCTTTACGGAATTTGATCATGCTTGTGT
CGGTGGATAGATAATGCATTGGTCTACGGCCGTAGTGCTTCATCTTGAAG
GGGTGGCTCTGCTGTGGGCTTGTACAGCACGGTAGAGAGCGCGAATGGTA
CTTACGTACGTCTTGTTTTTTCAACGCGCAGAACGGACAGCAACAGCAGC
AGGGGTGCCAGGCAGCGCCCAAGACGCGCCTTCGCTTCAGAGGGGTCTTT
GGCTGTGTTTATCTCGGTGAAGCGATGAAGGTATGACCAAAAAGCATAGC
GGGAGAGATGGTAAACGTTTACAGCGACACGACACGCAGTCGCTCAAATT
CCGTCCCCGCGGTGTCGCTGTATATTTTCTGTGTGAAGTGGTCATCATGC
GCATGTTTGTAGTTGGTTCTCTTTTTAGGGTACTTGTCCACAGCAGTGTA
CGCTTGCCTTCACAACCGACCTTACCATGAAATGAGTGTGGAGTGCGTGG
GTAGTTCCTATTGCAAGTCCCGTCCCCCGTCCACAGCAGACAGCAGTGGC
ATTTTTCCCGCGAACTATGTACTGCTGTCAGTCGTGCTGCTGCAGCAGCC
GTGGTAAAGTGTGCTTCCAGCAGCAGCGATATGCAAAACGGTACAGCAGT
ACTACATGGTACTCGTGTGCCGCCGTAGCTGTCTTTCCCGTTTCACTACA
TACATGTGATGTTCAGTCGGCATTCCACTACAAGACACACCTTCACGCTG
CTAAGTAGTGTGGAGGAAGAAACAGCTAGCGACCAAAAACACATCGTATT
GGTAGCATATGCATACAGCCGATCATATCTATAAAAAAACAGGTTCTCGC
GGCGGCCGCGGTGCTCGTGCACCTACCTGCGTGCCTTGTCCGGGGATATA
CGGCGATTCCACCCCCATCTTTGACGAGAGGGGGGCTTTCCGCGCGCGCC
GCGGGGGCAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig138:43164..44725+

>mRNA_E-siliculosus-1a_F_contig138.2259.1 ID=mRNA_E-siliculosus-1a_F_contig138.2259.1|Name=mRNA_E-siliculosus-1a_F_contig138.2259.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:43164..44725+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGCAACAACGCCTAAACAACAAGCAACAACGCCTAAACAACAACGGACA
GCAACAGCAGCAGGGGTGCCAGGCAGCGCCCAAGACGCGCCTTCGCTTCA
GAGGGGTCTTTGGCTGTGTTTATCTCGGTGAAGCGATGAAGAACGGACAG
CAACAGCAGCAGGGGTGCCAGGCAGCGCCCAAGACGCGCCTTCGCTTCAG
AGGGGTCTTTGGCTGTGTTTATCTCGGTGAAGCGATGAAGGTTCTCGCGG
CGGCCGCGGTGCTCGTGCACCTACCTGCGTGCCTTGTCCGGGGATATACG
GCGATTCCACCCCCATCTTTGACGAGAGGGGGGCTTTCCGCGCGCGCCGC
GGGGGCAGGGGTTCTCGCGGCGGCCGCGGTGCTCGTGCACCTACCTGCGT
GCCTTGTCCGGGGATATACGGCGATTCCACCCCCATCTTTGACGAGAGGG
GGGCTTTCCGCGCGCGCCGCGGGGGCAGGG
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