mRNA_E-siliculosus-1a_F_contig138.2257.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI) HSP 1 Score: 130 bits (327), Expect = 9.640e-32 Identity = 67/84 (79.76%), Postives = 69/84 (82.14%), Query Frame = 1
Query: 70 PVEETPL-------GLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARN 300
P TPL GLVDHYLGENRVIGRDITEEQAH LNAVHRLLLRVEAVHAASWLWVSD+PDIAHTAEVT R VTPS R+
Sbjct: 285 PFGRTPLLCSIEDEGLVDHYLGENRVIGRDITEEQAHKLNAVHRLLLRVEAVHAASWLWVSDAPDIAHTAEVTKRTKVTPSPRS 368
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: A0A6H5JWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ8_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.350e-28 Identity = 66/100 (66.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARN 300
VRMI+DA ADTTSAVRV KLG LPV+ETPLGL AH L+AVHRLLLRVEA+HAASWLWVSD+PDIAHTAEVT R V P AR+
Sbjct: 226 VRMIVDAVADTTSAVRVLKLGLLPVKETPLGL-------------------AHKLSAVHRLLLRVEALHAASWLWVSDAPDIAHTAEVTKRTKVIPPARS 306
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.670e-20 Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRVSKL-GFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAE 261
VR+++DAGADTTS VRV+ L G + +TPL + L E V G+ TEEQ H L A+ RLLLRV+AVHA SWLW SD+P I H E
Sbjct: 81 VRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVE 168
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.550e-13 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 4 RMIIDAGADTTSAVRVSKLG-FLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAH 252
R +ID GADT S V V++ G + +TPLG L +N+V G++ TEEQ +L A+HRLL ++EAVHA SWLW S I H
Sbjct: 300 RFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGH 383
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: A0A6H5L1C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C9_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.330e-13 Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRVS-KLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRPMVTPSARNATPFCRPCSGIHRR 342
VR+++DAGADTTS VR + + G LPV TP+ + + L + G I +E H L + RLLLRVEAVHA SWLW + P + A + P T + P RP I RR
Sbjct: 223 VRLLVDAGADTTSIVRFTIQPGTLPVVCTPMSVDTNALHQKAAYGTAIPDELQHRLGLIRRLLLRVEAVHATSWLWQNGIPRVGLAARGSPNPK-TKATSTTGPQLRPMLPILRR 336
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 7.850e-13 Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVR-VSKLGFLPVEETPLGLVDHYLGENRVI-GRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAE 261
VR++I+AGADTTS +R + G + TPL L YL E + G TEE L A+ RLLLR EAVHA SWLW SD+ + H AE
Sbjct: 289 VRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAE 377
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7FSU4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU4_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 2.510e-12 Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 4 RMIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAH-TAEVTNRPMVT 285
+++++AGADTTSAV VSK F TPLGL L +TEEQ L A+ RLLLRVEAVHA SWLW +D I H TA T+R + T
Sbjct: 169 QLLVEAGADTTSAVPVSK-HFGKDSVTPLGLTMRLLDGRSTY--PLTEEQLKKLKAIRRLLLRVEAVHAVSWLWSTDISTITHSTAHGTDRTIAT 260
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.170e-12 Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRV-SKLGFLPVEETPLGLVDHYLGEN-RVIGRD-ITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTA 258
VR++++AGADTTS V V ++LG V TPLGL + + + +V+GR + EQ H L A+ RLLLRVEAVHA SWLW SD I A
Sbjct: 305 VRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAA 393
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 2.240e-11 Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRVSKL-GFLPVEETPLGLVDHYLGENRVI-GRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTAEVTNRP 276
VRM++DAGADTTS V+V L G + +TPL L + V G+ T+E L A+ RLLLRV+AVHA SWLW S +P I E P
Sbjct: 401 VRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEP 494
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.600e-10 Identity = 46/113 (40.71%), Postives = 57/113 (50.44%), Query Frame = 1
Query: 1 VRMIIDAGADTTSAVRVS-KLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAHNLNAVHRLLLRVEAVHAASWLWVSDSPDIAHTA------EVTNRPMVTPSARNATPFCR 318
VR+++DAGADTTS VR + + G LPV TPL L L + I +E L + RLLLRVEAVHA SWLW + P + A E + P R P R
Sbjct: 307 VRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILR 419 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig138.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig138.2257.1 >prot_E-siliculosus-1a_F_contig138.2257.1 ID=prot_E-siliculosus-1a_F_contig138.2257.1|Name=mRNA_E-siliculosus-1a_F_contig138.2257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp MIIDAGADTTSAVRVSKLGFLPVEETPLGLVDHYLGENRVIGRDITEEQAback to top mRNA from alignment at E-siliculosus-1a_F_contig138:3721..5357- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig138.2257.1 ID=mRNA_E-siliculosus-1a_F_contig138.2257.1|Name=mRNA_E-siliculosus-1a_F_contig138.2257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1637bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:3721..5357- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig138:3721..5357- >mRNA_E-siliculosus-1a_F_contig138.2257.1 ID=mRNA_E-siliculosus-1a_F_contig138.2257.1|Name=mRNA_E-siliculosus-1a_F_contig138.2257.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig138:3721..5357- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |