mRNA_E-siliculosus-1a_F_contig1379.2256.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1379.2256.1
Unique NamemRNA_E-siliculosus-1a_F_contig1379.2256.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: D7FK15_ECTSI (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK15_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 6.150e-89
Identity = 154/216 (71.30%), Postives = 157/216 (72.69%), Query Frame = 2 
Query:  263 MVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDGKKHVLPIPPAWTEAALRACRVAAEMDPSIPIPRPDICVVNHYTAASRLGWHQADLSSRRDSGLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAPPXXXXXXXXXTRSSAAEGAEGKGAGTCIVPGGGRFNLNFREL 910
            MVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDG KHVLPIPPAWTE ALR                                                     GQPATFQYRISWKKSAQVKSVRLESGD LIFGGRSRGIIHGVPR+DTAVAPP XXXXXXX TRSSAAEGAEG+GAG C+VPGGGRFNLNFREL
Sbjct:    1 MVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDGNKHVLPIPPAWTEVALR-----------------------------------------------------GQPATFQYRISWKKSAQVKSVRLESGDALIFGGRSRGIIHGVPRIDTAVAPPPXXXXXXXATRSSAAEGAEGRGAGPCVVPGGGRFNLNFREL 163
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A7S2SHR7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHR7_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.640e-45
Identity = 91/180 (50.56%), Postives = 115/180 (63.89%), Query Frame = 2 
Query:  242 NACLRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDGKKHVLPIPPAWTEAALRACRVAAEMDPSIPI-PRPDICVVNHYTAASRLGWHQADLSSRRDSGLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAV 778
            +A L KG+V L   +  ++Q  L     +LGA   GGFY C+NEKTKRM MMNLG + DGK H   IPP +   A  A R A+ +D SIP+   PD+CVVN YT ASRLG H+ D  S+   GLPV+S SLG  A F YR  W K   VK + L SGDVL+FGG+SR ++H VPR+ ++V
Sbjct:   15 DAVLPKGVVHLAGHVEPEQQMALIRLAQQLGACAKGGFYWCNNEKTKRMMMMNLGRRPDGKCHPQGIPPEFLAVAREASRSASAVDSSIPVLDDPDVCVVNKYTPASRLGMHE-DQVSKGLPGLPVVSISLGLSAEFCYRRGWGKRYPVKKITLRSGDVLVFGGKSRSLLHAVPRIHSSV 193
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A835YUH1_9STRA (Alpha-ketoglutarate-dependent dioxygenase AlkB-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUH1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.400e-44
Identity = 98/225 (43.56%), Postives = 135/225 (60.00%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYSCHNEKTKRMRMMNLGLKTDGKKHVLP--IPPAWTEAALRACRVAAEMDPSIPIP--RP-DICVVNHYTAASRLGWHQADLSSRRDSGLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAPPXXXXXXXXXTRSSAAEGAEGKGAGTCIVPGGGRFNLNFREL 910
            L++GMV++K+FL+  +QE+L   +G + +L   GF+ C NEKT+ MRMM+LG  T     +LP  IP +W + A  A   AA  D S+     RP ++CVVNHYT+ S+LGWHQ D+ ++RD  +PV+S SLG  ATF ++ S+ K A  +SV LESGD L+FGG+SRG++H V    T + PP          R SAA                GRFN+N REL
Sbjct:   39 LQRGMVLIKAFLNETQQEQL---IGEVLSLGQTGFFQCDNEKTRHMRMMHLGRSTAPPHKLLPLSIPLSWQQLAEDAVTAAAAADTSLSNKHLRPANVCVVNHYTSCSKLGWHQ-DMMTKRDCSIPVVSLSLGDSATFHFKNSYSKKATERSVVLESGDALVFGGQSRGVVHSV----TDIKPPQQPISWQ---RGSAALA--------------GRFNVNLREL 238
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A0L9VS54_PHAAN (Fe2OG dioxygenase domain-containing protein n=4 Tax=Vigna TaxID=3913 RepID=A0A0L9VS54_PHAAN)

HSP 1 Score: 112 bits (279), Expect = 7.780e-24
Identity = 82/205 (40.00%), Postives = 106/205 (51.71%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTD------GKKHVLP------IPPAWTEAALRACRVAAEMDPS----------IPIPRPDICVVNHYTAASRLGWHQADLSSRRDS---GLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAP 784
            LR GMV+LK+F+S DEQ E+      LG +  GGFY     N    R++MM LG+  D      G K V        IP  +++   RA + A  +  +          +P   PDIC+VN YT   +LG HQ D    R+S   GLPV+SFS+G  A F Y    +   + K V LESGDVLIFGG SR + HGVP +    AP
Sbjct:  141 LRPGMVLLKNFISHDEQVEIVKVCRELG-VGLGGFYQPGYENGAKLRLKMMCLGMDWDPQTYKYGNKRVFDGSTPPSIPNHFSKLVTRAIQEAQSLTENEYGACNVEDVLPSMTPDICIVNFYTENGKLGLHQ-DRDESRESLQKGLPVVSFSIGDSADFLYGDK-RNVEEAKRVMLESGDVLIFGGGSRHVFHGVPSVFPNSAP 342
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A371E5A5_MUCPR (AlkB (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371E5A5_MUCPR)

HSP 1 Score: 112 bits (281), Expect = 8.320e-24
Identity = 93/245 (37.96%), Postives = 118/245 (48.16%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTD------GKKHVLP------IPPAWTEAALRACRVAAEM----------DPSIPIPRPDICVVNHYTAASRLGWHQADLSSRRDS---GLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAPPXXXXXXXXXTRSSAAEGAEGKGAGTCIVPGGGRFNLNFR 904
            LR GMV+LK++++ DEQ E+      LG L HGGFY     N    R++MM LGL  D      G+K V+       IP  ++   LRA   A  +          +  +P   PDIC+VN YT   +LG HQ D    R+S   GLPV+SFS+G  A F Y    +     +SV LESGDVLIFGG SR + HGV  +    AP           R +            CI PG  R NL FR
Sbjct:  194 LRPGMVLLKNYITHDEQVEIVKTCRDLG-LGHGGFYQPGYANGAKLRLKMMCLGLDWDPQTYKYGEKRVIDGSKPPSIPNHFSALVLRAIEEAHSLIKKEYRVRNVEDVLPSMTPDICIVNFYTNNGKLGLHQ-DRDESRESLRKGLPVVSFSVGNAAEFLYG-DGRDVKNAESVFLESGDVLIFGGESRHVFHGVSSVFPNSAP-------YELLRDA------------CISPG--RLNLTFR 414
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A0B2SKK5_GLYSO (Alpha-ketoglutarate-dependent dioxygenase abh1 n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2SKK5_GLYSO)

HSP 1 Score: 113 bits (282), Expect = 1.270e-23
Identity = 88/245 (35.92%), Postives = 119/245 (48.57%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTD------GKKHVLP------IPPAWTEAALRACRVAA----------EMDPSIPIPRPDICVVNHYTAASRLGWHQADLSSRRD--SGLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAPPXXXXXXXXXTRSSAAEGAEGKGAGTCIVPGGGRFNLNFRE 907
            LR GMV+LK++++ DEQ E+      LG L  GGFY     N    R++MM LG+  +      GKK V+       IP  +++  +RA + A           +++  +P   PDIC+VN YT   +LG HQ +  SR     GLPV+SFS+G  A F Y    +   +  SV LESGDVLIFGG SR + HGV  +    AP                         TC+ PG  R NL FR+
Sbjct:  265 LRPGMVLLKNYITLDEQVEIVKVCRELG-LGPGGFYQPGYANGAKLRLKMMCLGMDWNPQSYKYGKKRVIDGSKPPSIPYHFSQLVIRAIQEAHSIIKKENRVFKVEDELPSMTPDICIVNFYTNNGKLGLHQDNDESRESLRKGLPVVSFSIGDSAEFLYGDE-RNVEKADSVLLESGDVLIFGGESRHVFHGVSSVLPNSAPKELLRD-------------------TCLCPG--RLNLTFRQ 486
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: UPI001F5F2103 (alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F2103)

HSP 1 Score: 107 bits (267), Expect = 2.160e-23
Identity = 79/201 (39.30%), Postives = 103/201 (51.24%), Query Frame = 2 
Query:  263 MVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTD------GKKHVLP------IPPAWTEAALRACRVAAEMDPS----------IPIPRPDICVVNHYTAASRLGWHQADLSSRRDS---GLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAP 784
            MV+LK+F+S DEQ E+      LG +  GGFY     N    R++MM LG+  D      G K V        IP  +++   RA + A  +  +          +P   PDIC+VN YT   +LG HQ D    R+S   GLPV+SFS+G  A F Y    +   + K V LESGDVLIFGG SR + HGVP +    AP
Sbjct:    1 MVLLKNFISHDEQVEIVKVCRELG-VGLGGFYQPGYENGAKLRLKMMCLGMDWDPQTYKYGNKRVFDGSTPPSIPNHFSKLVARAIQEAQSLTENEYGACNEEDVLPSMTPDICIVNFYTENGKLGLHQ-DRDESRESLQKGLPVVSFSIGDSADFLYGDK-RNVEEAKRVMLESGDVLIFGGESRHVFHGVPSVFPNSAP 198
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: A0A4D6MRG2_VIGUN (Alkylated DNA repair protein n=1 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6MRG2_VIGUN)

HSP 1 Score: 110 bits (274), Expect = 3.760e-23
Identity = 85/209 (40.67%), Postives = 104/209 (49.76%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTD------GKKHVLP--IPPA------------------WTEAALRACRVAAEMDPSIPIPRPDICVVNHYTAASRLGWHQADLSSRRDS---GLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAP 784
            LR GMV+LK+F+S DEQ E+      LG L  GGFY     N    R++MM LG+  D      G K V     PP+                   TE    AC VA  +    P   PDIC+VN YT   +LG HQ D    ++S   GLPV+SFS+G  A F Y    +   + K V LESGDVLIFGG SR + HGVP +    AP
Sbjct:  141 LRPGMVLLKNFISHDEQVEIVKVCRELG-LGLGGFYQPGYANGAKLRLKMMCLGMDWDPQSYKYGNKRVFDGSTPPSIPNHFSKLVTRAILESQSLTEKEYGACNVANVL----PSMTPDICIVNFYTENGKLGLHQ-DRDESKESLQKGLPVVSFSIGDSADFLYGDK-RNVEEAKRVVLESGDVLIFGGESRHVFHGVPSIFPNSAP 342
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: R0G514_9BRAS (Fe2OG dioxygenase domain-containing protein n=4 Tax=Capsella rubella TaxID=81985 RepID=R0G514_9BRAS)

HSP 1 Score: 110 bits (275), Expect = 6.910e-23
Identity = 77/204 (37.75%), Postives = 108/204 (52.94%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYS--CHNEKTKRMRMMNLGLKTDGKK----HVLPI----PPA-------WTEAALRACRVAAEMDPS-------IPIPRPDICVVNHYTAASRLGWHQADLSSRRD--SGLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAP 784
            +R GMV+LK++LS D+Q  +     +LG L  GGFY     +E    ++MM LG   D +      V PI    PP        + E A++  +  A  + +       IP   PDIC+VN YT+  RLG H+    S R    GLPV+SFS+G  A F Y   W + A  +++ LESGDVL+FGG+SR ++HGV  +    AP
Sbjct:  215 IRPGMVLLKNYLSIDDQVMIVNKCRQLG-LGEGGFYQPGYRDEAKMHLKMMCLGKNWDPETSRYGEVRPIDGSNPPKIPAEFYQFVEKAIKESQSLAASNSNEKRGEVIIPFMSPDICIVNFYTSTGRLGLHRDKDESERSIQKGLPVVSFSIGDSAEFLYGDQWDEDA-AETLVLESGDVLLFGGKSRNVLHGVRSITKNTAP 416
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BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Match: V7B3M8_PHAVU (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7B3M8_PHAVU)

HSP 1 Score: 108 bits (271), Expect = 7.230e-23
Identity = 78/198 (39.39%), Postives = 106/198 (53.54%), Query Frame = 2 
Query:  251 LRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYSC-HNEKTK-RMRMMNLGLKTD-------------GKKHVLPIPPAWTEAALRACRVAAEMDPSIPIPR--PDICVVNHYTAASRLGWHQADLSSRRDS---GLPVISFSLGQPATFQYRISWKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAP 784
            LR GMV+L+ +LS  +Q+++      LG +  GGFY   + E  +  ++MM LG   D             G K  L IPP +      A R +  + P  P+P   PDIC+VN Y+   RLG HQ D    +DS   GLPV+SFS+G  A F Y    +   + + ++LESGDVLIFGG SR + HGV  +DT  AP
Sbjct:  131 LRPGMVLLRGYLSLSDQKKIVERCRELG-VGVGGFYQPGYGEGVEMHLKMMCLGKNWDPHTSQYGEQRPFDGAKPPL-IPPEFHTLVSNALRDSNALFPHDPLPSISPDICIVNFYSQTGRLGLHQ-DKDESKDSLRRGLPVVSFSIGYSAQFLYG-DHRDPDKAQKLQLESGDVLIFGGPSRNVFHGVTAIDTTTAP 324
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1379.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK15_ECTSI6.150e-8971.302OG-FeII_Oxy_2 domain-containing protein n=1 Tax=E... [more]
A0A7S2SHR7_9STRA6.640e-4550.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YUH1_9STRA4.400e-4443.56Alpha-ketoglutarate-dependent dioxygenase AlkB-lik... [more]
A0A0L9VS54_PHAAN7.780e-2440.00Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]
A0A371E5A5_MUCPR8.320e-2437.96AlkB (Fragment) n=1 Tax=Mucuna pruriens TaxID=1576... [more]
A0A0B2SKK5_GLYSO1.270e-2335.92Alpha-ketoglutarate-dependent dioxygenase abh1 n=2... [more]
UPI001F5F21032.160e-2339.30alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A4D6MRG2_VIGUN3.760e-2340.67Alkylated DNA repair protein n=1 Tax=Vigna unguicu... [more]
R0G514_9BRAS6.910e-2337.75Fe2OG dioxygenase domain-containing protein n=4 Ta... [more]
V7B3M8_PHAVU7.230e-2339.39Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1379contigE-siliculosus-1a_F_contig1379:25124..29317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size849
Model size1285
Exons6
Ec32 orthologEc-18_002820.1
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelfabids
COG Functional cat.A
EggNOG OGs37IW5@33090,3GBEH@35493,4JEJ9@91835,COG3145@1,KOG2731@2759
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
Seed eggNOG ortholog3847.GLYMA01G32116.1
Seed ortholog evalue2.5e-22
Seed ortholog score112.8
Taxonomic scopeViridiplantae
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1379.2256.1prot_E-siliculosus-1a_F_contig1379.2256.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1379 25188..28945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.3060465-UTR-E-siliculosus-1a_F_contig1379:25123..251871622927892.3060465-UTR-E-siliculosus-1a_F_contig1379:25123..25187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1379 25124..25187 +
1696318725.8821468-UTR-E-siliculosus-1a_F_contig1379:25123..251871696318725.8821468-UTR-E-siliculosus-1a_F_contig1379:25123..25187Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1379 25124..25187 +
1622927892.431068-UTR-E-siliculosus-1a_F_contig1379:28945..293171622927892.431068-UTR-E-siliculosus-1a_F_contig1379:28945..29317Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1379 28946..29317 +
1696318725.950415-UTR-E-siliculosus-1a_F_contig1379:28945..293171696318725.950415-UTR-E-siliculosus-1a_F_contig1379:28945..29317Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1379 28946..29317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927892.3245535-CDS-E-siliculosus-1a_F_contig1379:25187..254361622927892.3245535-CDS-E-siliculosus-1a_F_contig1379:25187..25436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 25188..25436 +
1696318725.8935897-CDS-E-siliculosus-1a_F_contig1379:25187..254361696318725.8935897-CDS-E-siliculosus-1a_F_contig1379:25187..25436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 25188..25436 +
1622927892.3400216-CDS-E-siliculosus-1a_F_contig1379:25736..258171622927892.3400216-CDS-E-siliculosus-1a_F_contig1379:25736..25817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 25737..25817 +
1696318725.9025624-CDS-E-siliculosus-1a_F_contig1379:25736..258171696318725.9025624-CDS-E-siliculosus-1a_F_contig1379:25736..25817Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 25737..25817 +
1622927892.3587537-CDS-E-siliculosus-1a_F_contig1379:26226..263041622927892.3587537-CDS-E-siliculosus-1a_F_contig1379:26226..26304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 26227..26304 +
1696318725.9122732-CDS-E-siliculosus-1a_F_contig1379:26226..263041696318725.9122732-CDS-E-siliculosus-1a_F_contig1379:26226..26304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 26227..26304 +
1622927892.380721-CDS-E-siliculosus-1a_F_contig1379:26903..270091622927892.380721-CDS-E-siliculosus-1a_F_contig1379:26903..27009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 26904..27009 +
1696318725.9251573-CDS-E-siliculosus-1a_F_contig1379:26903..270091696318725.9251573-CDS-E-siliculosus-1a_F_contig1379:26903..27009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 26904..27009 +
1622927892.3989637-CDS-E-siliculosus-1a_F_contig1379:27887..279401622927892.3989637-CDS-E-siliculosus-1a_F_contig1379:27887..27940Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 27888..27940 +
1696318725.9340155-CDS-E-siliculosus-1a_F_contig1379:27887..279401696318725.9340155-CDS-E-siliculosus-1a_F_contig1379:27887..27940Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 27888..27940 +
1622927892.416102-CDS-E-siliculosus-1a_F_contig1379:28663..289451622927892.416102-CDS-E-siliculosus-1a_F_contig1379:28663..28945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 28664..28945 +
1696318725.9424248-CDS-E-siliculosus-1a_F_contig1379:28663..289451696318725.9424248-CDS-E-siliculosus-1a_F_contig1379:28663..28945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1379 28664..28945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1379.2256.1

>prot_E-siliculosus-1a_F_contig1379.2256.1 ID=prot_E-siliculosus-1a_F_contig1379.2256.1|Name=mRNA_E-siliculosus-1a_F_contig1379.2256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=283bp
MAEESSSRKRGRDDSSSSGSGHFGCVEVAPPASAAATARESAAAGGSITV
QNHSSNSSSNACLRKGMVILKSFLSGDEQEELAAHVGRLGALQHGGFYSC
HNEKTKRMRMMNLGLKTDGKKHVLPIPPAWTEAALRACRVAAEMDPSIPI
PRPDICVVNHYTAASRLGWHQADLSSRRDSGLPVISFSLGQPATFQYRIS
WKKSAQVKSVRLESGDVLIFGGRSRGIIHGVPRMDTAVAPPPAVVVPPAA
TRSSAAEGAEGKGAGTCIVPGGGRFNLNFREL*
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mRNA from alignment at E-siliculosus-1a_F_contig1379:25124..29317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1379.2256.1 ID=mRNA_E-siliculosus-1a_F_contig1379.2256.1|Name=mRNA_E-siliculosus-1a_F_contig1379.2256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1379:25124..29317+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCAAGCACTCTTACCTGCTGCGTTGTTGTTCGCCTTCTAGACTAGACT
GTTTTGGCACTGCCATGGCTGAGGAGTCCTCGTCGCGCAAACGAGGACGA
GACGATAGCAGCAGCAGCGGCAGTGGACACTTTGGATGTGTCGAAGTAGC
ACCGCCGGCATCCGCAGCAGCGACGGCGAGAGAGTCCGCGGCGGCGGGCG
GCAGTATCACTGTACAAAATCACAGCAGCAACAGCAGCAGCAATGCCTGC
TTGCGGAAGGGCATGGTTATCCTCAAGAGCTTTCTCTCGGGAGATGAGCA
GGAAGAATTGGCGGTGAGGCCCGGGGCAGGCATGTGTGCGTGTTGGTGAT
GCTTATCTTGCCAACTCCTGCGGGCGATACTGCTGTTGTAGCCAATTCAT
GTTGTACGCGCTCGCTCGCTCCCTCGCATGGACGTATCTCGCACTTGACC
ATGTCGCCCCTGCGAGCACCCGCAGGAGCGTGGACGTGTGTATGCTCCTT
GCTAACTCTTTTCACGCCAACCACCGAACGACACACGATCACTGCTGTTG
AGCTCATCCATTGGTCGTCGAACTCTCAGTCGCGCTGACGGCGTCCCGCC
CCTTCCCTCGAAGGCTCACGTAGGTCGCCTAGGCGCGCTGCAGCACGGTG
GTTTCTACTCCTGCCACAACGAGAAGACGAAGCGCATGCGGATGGTGAGA
CGTGCAGGGAAGCGGAGGGGGGGGGGGCTGCTGCCTTCGGCGCGTGTGGG
ACGTACACATACACCAGAGTACATATCATAGGGTTGTTTGCCACAGATTT
GTCCCCCGTAGCGTAGGCGACTTGAAACCTAGGACGTCGGCCGCGCTCGT
TACATAGGGTGCGGCTCACTTGTTTGGCCGTCGGTTCAGCGTGTTCTTCG
GAGAAGACAACCAATCCCAAGTTGGGAGAAGGGGAAGAAACGGCAGGTAG
ACAGTGCAAGCGGTGAGCGAGAGAGAGTGGTGGTGCGAGGTACCTCGTCG
GACACATCATTTGGCCCAGAGATGGATGTCGAGAATCGAGCCTCAAGCGT
GTTCACTGACAACAACAGTAAACCGCAAGCCGAAAACGATGCAACGCCGA
CAGATGAATCTGGGGCTGAAGACAGACGGGAAGAAGCACGTGTTGCCCAT
CCCGCCGGCGTGGACCGAGGCCGCCCTGAGGGTGAGCGAGCGACAAAAGG
CTCTCGCTACAGGGCGAAGCCGGCCGAGACTCTAAGTACTCTGTAGCTGA
TCTGATTCTTCCTCGGGTTTTGGTTGCTCTCGTCCCGACGCCTCTCTGTT
CCTATTTACCAAACCCCGCCCTTACGCGGTTCTGGATTCAGAATATTTCC
TTGATGCTCGAGAGCGAGGGAGGGTCATGTTTCTCGCCACACTATGGTAA
TTTTGTTACCGTTACGAACTTGGGATGCTAACCTCCGTCGCCTGCTCCCA
TGGAATGTCTAGTGGGATTCGACAACAACCACAGCACAGATTTGACGGCC
ACTTCGTTGCATTTGTCGGTACATGTTCAACTCACCGACCGGGATCGCGC
AGAGGAGGACAATTATTTTATTGTTCTTTGCTCTCCACCTTTCCCCTTGC
GGTACTTGCCTTCGACTGTTAACGCGAGACGCGTTCATTCAGCTGTTCCC
TCATTTTGTGCTCACTCACGAGTAGCTAGCAAGTGAGCTTCTGTTCTGTT
CCTCTTGATGGTATGAAGCGTACTACCCTTCATCTGGTTTGTCCTTTGTT
GCTAACCCTTCGTTTCGTTTCCCTGGGCAGGCCTGTCGGGTTGCTGCGGA
GATGGACCCATCCATCCCCATCCCGCGACCAGACATTTGCGTGGTAAACC
ACTACACCGCCGCGTCTCGCCTAGGATGGCACCAAGGTGCGCGGACGAGC
CGTCATTTGAAGAACCCTGCGTTGTTGCTGTTGTTGTTAGTTGTTGTTAG
TTGTTGTTGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTCTCTTGCCG
TAGGTGGCGCAACAAACTACCACCCATTCCCAAAAAACTCCAGATCTCGA
TGAATGCCAGGGTGGCAATTTATTCGCAAGCCCAAACGCGTTTGTCAATG
CTGACGTCGTGGTCGGATGGTATGTTTGTTCTCGTGTTGTGGTGCAGTTT
TTTTTTGTTTTTCAGCGCTGAGCTTCTGCTTGGTGCAGATTCGTCGCTTG
CTGATCCTTCACAGACCACCGCAAAGATTGGGACGCTCATTTTCCTTCTT
TTCTGTCGTGATATAGAGCCTTTTCGTCTCCCGTGCGTACATGATTTCGA
GCGGATTCCACTGTTGTTGCTGCCGTCGAGCTGTGTTCTTTGACGCCCAT
GTGTCGCTTTTGGCGACACTCTGATACTGTTATTCTGAACAGACCGCTGG
CGCCAACTGCTCTACGACCCCTGACTCCCCATGTTCCTGGGGTGTGCGTA
TACCGTGTGCTACGCGCTGCCATGCCAAGATCCCGCTACCAACCGACCCC
GAGCTCCAATTGCTTCACTGTCTGCTGTCTTTGTGCTTTGCATACACACA
CGCCTTGTCTTACGGTGAATAGCCCTAGCCTCCCCCATGACGCCCCCTCA
CGGGTTTCCAGATCATGGCCTCTATAAGCGCCCTCTATTTTCAGCCGCAC
TCTGAGACTGACGTGTTTTCCTCTCTGTCAGCCGGTTAACACGGTCGATG
CTGATATGAAAGAACGCAGATACGGCTGGTTTCCGAACGTCTGTTTTTGT
GTGTTCGATCCCAGCAGATCTGTCCAGCCGTCGAGATTCAGGGCTGCCGG
TGATCTCTTTCTCTCTCGTGAGTGTTTGTGCCGCGACTGCACCATTTCGC
CGTCCGCAGACGGCAGACAAGAAGGATCTGTGTTGCAAACACAAGTGTTT
TCATCGGTTGGTTCTTTGAATGGCCCGCCGAAGATGTCCGCACGATGCAC
GAGCGGTTGCGGTACTCCGGGTGTTGTTGTTGCTGCTGTTGCTGTTGCTG
CTGTTGTTGTTTGTTGTCTTCACATTCTCTCTGGCCTCTGTCAGCACAAC
TCCCCCTTCCTGATTCGAGACGAAAGAACTACTTCCCGTCATCACCGATG
TCGTTTCTAGCTTTCGATGGCTGAGATGGTTTCCTCTGGGAGACACCATT
TCCGTAAAATATTTTCCCGCATATGAACGGCGGCCTCCCTCGGGGGTCGT
CGGCGATCAAGTCAATGGAAAGGCACCGACCGTTTCTTCGTGTTTCTTGC
CGGGCGGAACGGGGTCACAAGGCGAGGCCAGCCCTTTCTCTGTGGCTGCA
TAGTCGCATGACACCAGAGTGTCTGCGAGAAACGGTTGCAGCCAGCGTCA
GGGCCAGCTTTTTCTGGATGCAATCACGTCGCACCGGTGTCTTCAGCACG
GAACGAGACAGTGCACCACGGTATTGCCGCTTGCCACTGCTGCCCTCCAG
CCAACGACGTTCCGGTTCGCGCTGACTTCTTCCTCTTACCCCCCCATCGT
GTGCAACTATGCCCCCCGCCCCCGCCCCCCCGCACGAAAGGGACAACCGG
CAACGTTCCAGTACAGAATATCCTGGAAGAAATCCGCTCAGGTCAAGTCC
GTGCGCCTGGAGAGCGGAGACGTGCTCATCTTTGGTGGCAGGTCGAGGGG
GATAATCCATGGGGTACCCCGGATGGACACCGCCGTCGCCCCCCCTCCCG
CGGTGGTTGTACCACCCGCCGCGACCCGTAGCTCCGCGGCGGAAGGGGCC
GAGGGTAAAGGCGCGGGAACGTGTATTGTGCCCGGTGGCGGCCGTTTCAA
CTTGAACTTCCGGGAGTTGTAGATAAGAAGGTGGTAGAGAGCGCCAGATA
TGAAGGACCATGGCGGCGCAACGCGAGGTGGTCCCTGCCGCGGATAGATG
ATGTGTTTCTTGTCATCAATCTTCCCCCTTTTTTTTAGGAAACATACATG
CAATCAAAGAAAGACTGCCCACAGTCGAAGGTTAGAAGTCTTTGCAGTGA
ATTATTTTTTGGTGGGGCGAACGTTCATGTCTGCTGCGCTGCTGCGGTGG
TGCGACCTATTCCGGGCTTGTGGCGCGCTGTAGGCGGGGTTGCAGAACCG
AACAATCTCCGTAGATAGTCCGCACCCTTCACTCTGTTTCCACGAACACA
GACAGACCCGCATCGCCGTTGGGGGCGAGGAGCTGTGCTGAACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1379:25124..29317+

>mRNA_E-siliculosus-1a_F_contig1379.2256.1 ID=mRNA_E-siliculosus-1a_F_contig1379.2256.1|Name=mRNA_E-siliculosus-1a_F_contig1379.2256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1698bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1379:25124..29317+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTGAGGAGTCCTCGTCGCGCAAACGAGGACGAGACGATAGCAGCAG
CAGCGGCAGTGGACACTTTGGATGTGTCGAAGTAGCACCGCCGGCATCCG
CAGCAGCGACGGCGAGAGAGTCCGCGGCGGCGGGCGGCAGTATCACTGTA
CAAAATCACAGCAGCAACAGCAGCAGCAATGCCTGCTTGCGGAAGGGCAT
GGTTATCCTCAAGAGCTTTCTCTCGGGAGATGAGCAGGAAGAATTGGCGA
TGGCTGAGGAGTCCTCGTCGCGCAAACGAGGACGAGACGATAGCAGCAGC
AGCGGCAGTGGACACTTTGGATGTGTCGAAGTAGCACCGCCGGCATCCGC
AGCAGCGACGGCGAGAGAGTCCGCGGCGGCGGGCGGCAGTATCACTGTAC
AAAATCACAGCAGCAACAGCAGCAGCAATGCCTGCTTGCGGAAGGGCATG
GTTATCCTCAAGAGCTTTCTCTCGGGAGATGAGCAGGAAGAATTGGCGGC
TCACGTAGGTCGCCTAGGCGCGCTGCAGCACGGTGGTTTCTACTCCTGCC
ACAACGAGAAGACGAAGCGCATGCGGATGGCTCACGTAGGTCGCCTAGGC
GCGCTGCAGCACGGTGGTTTCTACTCCTGCCACAACGAGAAGACGAAGCG
CATGCGGATGATGAATCTGGGGCTGAAGACAGACGGGAAGAAGCACGTGT
TGCCCATCCCGCCGGCGTGGACCGAGGCCGCCCTGAGGATGAATCTGGGG
CTGAAGACAGACGGGAAGAAGCACGTGTTGCCCATCCCGCCGGCGTGGAC
CGAGGCCGCCCTGAGGGCCTGTCGGGTTGCTGCGGAGATGGACCCATCCA
TCCCCATCCCGCGACCAGACATTTGCGTGGTAAACCACTACACCGCCGCG
TCTCGCCTAGGATGGCACCAAGGCCTGTCGGGTTGCTGCGGAGATGGACC
CATCCATCCCCATCCCGCGACCAGACATTTGCGTGGTAAACCACTACACC
GCCGCGTCTCGCCTAGGATGGCACCAAGCAGATCTGTCCAGCCGTCGAGA
TTCAGGGCTGCCGGTGATCTCTTTCTCTCTCCAGATCTGTCCAGCCGTCG
AGATTCAGGGCTGCCGGTGATCTCTTTCTCTCTCGGACAACCGGCAACGT
TCCAGTACAGAATATCCTGGAAGAAATCCGCTCAGGTCAAGTCCGTGCGC
CTGGAGAGCGGAGACGTGCTCATCTTTGGTGGCAGGTCGAGGGGGATAAT
CCATGGGGTACCCCGGATGGACACCGCCGTCGCCCCCCCTCCCGCGGTGG
TTGTACCACCCGCCGCGACCCGTAGCTCCGCGGCGGAAGGGGCCGAGGGT
AAAGGCGCGGGAACGTGTATTGTGCCCGGTGGCGGCCGTTTCAACTTGAA
CTTCCGGGAGTTGTAGGGACAACCGGCAACGTTCCAGTACAGAATATCCT
GGAAGAAATCCGCTCAGGTCAAGTCCGTGCGCCTGGAGAGCGGAGACGTG
CTCATCTTTGGTGGCAGGTCGAGGGGGATAATCCATGGGGTACCCCGGAT
GGACACCGCCGTCGCCCCCCCTCCCGCGGTGGTTGTACCACCCGCCGCGA
CCCGTAGCTCCGCGGCGGAAGGGGCCGAGGGTAAAGGCGCGGGAACGTGT
ATTGTGCCCGGTGGCGGCCGTTTCAACTTGAACTTCCGGGAGTTGTAG
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