mRNA_E-siliculosus-1a_F_contig1376.2247.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1376.2247.1 vs. uniprot
Match: A0A6H5KLG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG8_9PHAE) HSP 1 Score: 782 bits (2019), Expect = 2.250e-278 Identity = 406/476 (85.29%), Postives = 426/476 (89.50%), Query Frame = 1
Query: 1 YCSRFSVKTKQRSPYLAVLSGTMNIAWVATVFAQMATRSAGRAFPCGVTVTLSHLYVLLCVLPLMLRESGDSAIFATRISPTITKSPLVATGGTRYRNSPYTATARTSTFSLTHESNTEETXXXADSSSDDGRPSAQRTLRAKFAAVALVVVIGAFTALLIGESGRSWSIRGRVRDGACLPLESWHVLASWAACVMINACAYATTVEPEKIDPRTGKPRRKRRARQRGASVADGATGTAPRDAVTLQAPCLWHCGRRRQSCFLRGEKLLTVMVSSSFGGVYFALLWRQPNLTVGQEERLLLLLVVMNATLLLSTFWLGTRDWMTRRRPIGIADFAKLQRKWGTTKNIMRNANMAAMLRDATKAHFCEELYKFLAAFQQFESMNIDEAGDCGAGSSGDSLASSSSVHSHAHSRRLRPSIFSLRTEQPSQQLQPVEQHCAYQVPRYSEYLGILGEFFTPGCRHEVNVSSETRCQVAKA 1428
+ SRFS KTKQRSPYLAVLSGTMN+AWV FAQMATRSA RAFPCG+T TLSHLYVLLC LPLMLR+SGDSAIFATR+SPT TKSPLVATGG RYRN PYTA RTST SL HE +TE+T AD SSDD RPSAQ LRAK AAVALVVVIGAF ALLIG SG SWSIRGR RDGACLPLESWHVLASWAACVMI+ACAYATT EP+KIDPRTGKP KR ARQRGASVAD ATGTAPRDAVTL P LW CGRRRQSCFLRGEKLLTVMVSSSFGGVYFALLWRQPNLT+GQEERLLLLLVVMNA+LLLSTFWL TRDWM+RR PIG+ADF KLQ+KWG+TKNIM NAN+AA R+A KAHFCEELYKFLAAFQQFESMNIDEAGD GAGSSGDS AS SSVHSH +SRR RPSIFSLR EQPSQQLQPVEQHCAYQVPRYSEYLG+LGEFFTPGCRHEVNVSSETRCQVA+A
Sbjct: 28 WASRFSAKTKQRSPYLAVLSGTMNVAWVVAAFAQMATRSAERAFPCGITATLSHLYVLLCTLPLMLRQSGDSAIFATRVSPTSTKSPLVATGGRRYRNGPYTAMVRTSTASLPHEPSTEKTSCEADISSDDERPSAQLALRAKLAAVALVVVIGAFMALLIGGSGGSWSIRGRDRDGACLPLESWHVLASWAACVMIDACAYATTSEPDKIDPRTGKPLGKRGARQRGASVADEATGTAPRDAVTLHEPRLWPCGRRRQSCFLRGEKLLTVMVSSSFGGVYFALLWRQPNLTMGQEERLLLLLVVMNASLLLSTFWLSTRDWMSRR-PIGVADFTKLQKKWGSTKNIMGNANVAAKFREAAKAHFCEELYKFLAAFQQFESMNIDEAGDRGAGSSGDSPASCSSVHSHVNSRRFRPSIFSLRAEQPSQQLQPVEQHCAYQVPRYSEYLGMLGEFFTPGCRHEVNVSSETRCQVAQA 502 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1376.2247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1376.2247.1 >prot_E-siliculosus-1a_F_contig1376.2247.1 ID=prot_E-siliculosus-1a_F_contig1376.2247.1|Name=mRNA_E-siliculosus-1a_F_contig1376.2247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=718bp YCSRFSVKTKQRSPYLAVLSGTMNIAWVATVFAQMATRSAGRAFPCGVTVback to top mRNA from alignment at E-siliculosus-1a_F_contig1376:17431..29424- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1376.2247.1 ID=mRNA_E-siliculosus-1a_F_contig1376.2247.1|Name=mRNA_E-siliculosus-1a_F_contig1376.2247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11994bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1376:17431..29424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1376:17431..29424- >mRNA_E-siliculosus-1a_F_contig1376.2247.1 ID=mRNA_E-siliculosus-1a_F_contig1376.2247.1|Name=mRNA_E-siliculosus-1a_F_contig1376.2247.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4308bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1376:17431..29424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |