mRNA_E-siliculosus-1a_F_contig13756.2243.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13756.2243.1
Unique NamemRNA_E-siliculosus-1a_F_contig13756.2243.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A3S0ZBY8_9GAMM (GntR family transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A3S0ZBY8_9GAMM)

HSP 1 Score: 409 bits (1050), Expect = 1.660e-143
Identity = 208/227 (91.63%), Postives = 216/227 (95.15%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            MDA PTTK  IEQIAERITDA+MEHRLPPGIKLVEEKLA AFGVSRTKIRQALT+LAKEGLVTLHANRGAFVTRPSAAEARDLFATRRL+EPEIVRNVIARAC+HDL RLRQHL AEA+ARQEGDRR+IIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYD+PQTPACP+DEHNQIVEAIARQDQ  AI LML HLAHIES LELDVVPELDIHWETLYG
Sbjct:    3 MDAAPTTKPGIEQIAERITDAVMEHRLPPGIKLVEEKLAKAFGVSRTKIRQALTLLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLIEPEIVRNVIARACDHDLIRLRQHLVAEADARQEGDRRKIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHNQIVEAIARQDQAAAICLMLRHLAHIESTLELDVVPELDIHWETLYG 229          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A0F9XDY9_9ZZZZ (HTH gntR-type domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9XDY9_9ZZZZ)

HSP 1 Score: 395 bits (1016), Expect = 2.350e-138
Identity = 201/227 (88.55%), Postives = 212/227 (93.39%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            MDAVPTTK AIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHL AE+ ARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYD+PQTPACP+DEH  IV+AIA  D+  AI+LMLHHL HIE  L+LD  P+ DIHWETLYG
Sbjct:    1 MDAVPTTKPAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLVAESEARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHKLIVDAIAAHDETEAIKLMLHHLEHIECELQLDTEPKRDIHWETLYG 227          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A3B7LB10_9GAMM (GntR family transcriptional regulator n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A3B7LB10_9GAMM)

HSP 1 Score: 369 bits (946), Expect = 1.050e-127
Identity = 192/227 (84.58%), Postives = 204/227 (89.87%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            MDA  T+KLAIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LAKEGLVTLH NRGAFVTRPSAAEARDLFATRRLVEPEIVRNVI RAC  DLARLR HL  EA AR++GDRRRIIRLSGQFHMLLA+VSGN FIEKLMAELCPLTCLIIALYD PQTPACP+DEH+ IVEAIA++D+  AI LMLHHL HIE AL LD   E DIHWETLYG
Sbjct:    1 MDA-STSKLAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAKEGLVTLHPNRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIERACPGDLARLRAHLEEEAEARRQGDRRRIIRLSGQFHMLLAKVSGNSFIEKLMAELCPLTCLIIALYDEPQTPACPEDEHSDIVEAIAQRDETRAIALMLHHLHHIEQALHLDSPSERDIHWETLYG 226          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A1P8R734_9GAMM (GntR family transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A1P8R734_9GAMM)

HSP 1 Score: 367 bits (943), Expect = 3.010e-127
Identity = 188/222 (84.68%), Postives = 198/222 (89.19%), Query Frame = 1
Query:   16 TTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            TTKLAIEQIAERITDA+MEHRLPPGIKLVEEKLA AFGVSRTKIRQALT+LAKEGLVTLH NRGAFV RPSA EARDLFATRRLVEPEIVRNVIARACE D+ARL QHL  EA AR  GDRRRIIRLSGQFHMLLA ++ N FIEKLMAELCPLTCLIIALYD+PQTPACP+DEH+QIVEAI   D+  AIRLMLHHL HIES L LD  P+LDIHWETLYG
Sbjct:    5 TTKLAIEQIAERITDAVMEHRLPPGIKLVEEKLAGAFGVSRTKIRQALTLLAKEGLVTLHPNRGAFVKRPSAEEARDLFATRRLVEPEIVRNVIARACEQDIARLHQHLEEEAQARATGDRRRIIRLSGQFHMLLAALADNAFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHSQIVEAIENHDEAAAIRLMLHHLEHIESELMLDAAPKLDIHWETLYG 226          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A0X8HBC0_9GAMM (Putative HTH-type transcriptional regulator YdfH n=1 Tax=Halomonas chromatireducens TaxID=507626 RepID=A0A0X8HBC0_9GAMM)

HSP 1 Score: 363 bits (932), Expect = 1.480e-125
Identity = 186/228 (81.58%), Postives = 207/228 (90.79%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPEL-DIHWETLYG 681
            M+A+PT K AIEQIA+ ITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA+EGLVTLHANRGAFVTRP+A EARDLFATRRLVEPEIVRNVIA+ACEHD+ARL QHLA EA AR  GDRRRIIRLSGQFHMLLA ++GN FIEKLMAELCPLTCLIIALYD+PQTPACP+DEH+QIVEAIA  D++TA+RLMLHHL HIE  L+LD  P   +IHWE+LYG
Sbjct:    1 MEALPT-KPAIEQIADHITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQEGLVTLHANRGAFVTRPTADEARDLFATRRLVEPEIVRNVIAKACEHDIARLHQHLANEAQARLAGDRRRIIRLSGQFHMLLATLAGNAFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHSQIVEAIAAHDEDTAVRLMLHHLDHIEKELQLDAQPSTPNIHWESLYG 227          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A2N7UBI8_9GAMM (GntR family transcriptional regulator n=2 Tax=Halomonas TaxID=2745 RepID=A0A2N7UBI8_9GAMM)

HSP 1 Score: 356 bits (913), Expect = 1.160e-122
Identity = 180/227 (79.30%), Postives = 203/227 (89.43%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            M+    TK AIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA+EGLVTLH NRGAFVTRP+A+EARDLFATRRLVEPEIVR VI+RA E D+ARLR+HL  E  AR EGDRRRIIRLSG+FHMLLAE++GN FI+KLMAELCPLTCLIIALYD+PQTPACP+DEH++IV+AIA QD+ TAI LMLHHL HIE  L+LD +P  DIHWE+LYG
Sbjct:    1 METTSATKPAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQEGLVTLHPNRGAFVTRPTASEARDLFATRRLVEPEIVRCVISRASELDIARLREHLQQEDAARAEGDRRRIIRLSGRFHMLLAELAGNSFIQKLMAELCPLTCLIIALYDAPQTPACPEDEHSRIVDAIAAQDEATAIHLMLHHLKHIECELKLDAMPSRDIHWESLYG 227          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A1I4NSZ8_9GAMM (DNA-binding transcriptional regulator, GntR family n=1 Tax=Marinobacter zhejiangensis TaxID=488535 RepID=A0A1I4NSZ8_9GAMM)

HSP 1 Score: 344 bits (882), Expect = 6.080e-118
Identity = 175/227 (77.09%), Postives = 196/227 (86.34%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            MD     K  + QIAERITDA+MEHRLPPGIKLVEEKLATAFGVSR KIRQAL++LAKEGLVTLHANRGAFVTRP+AAEARDLFATRRL+EPEIVRNVI RA + DL RL+ HL  EA+ARQ+G+RRRIIRLSGQFHMLLA+ SGNKFIEK+M+ELCPLTCLIIALYD PQTPACP+DEH+QI+EAI R+D + AI+LML+HL HIE  L LD     DI WETLYG
Sbjct:    1 MDFSQPQKPDVAQIAERITDAVMEHRLPPGIKLVEEKLATAFGVSRAKIRQALSLLAKEGLVTLHANRGAFVTRPTAAEARDLFATRRLIEPEIVRNVIERASDEDLKRLQAHLTEEADARQQGNRRRIIRLSGQFHMLLAQASGNKFIEKMMSELCPLTCLIIALYDEPQTPACPEDEHSQIIEAITRKDTDRAIQLMLNHLEHIEKELHLDRPAARDIQWETLYG 227          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A7T0RI57_9GAMM (GntR family transcriptional regulator n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A7T0RI57_9GAMM)

HSP 1 Score: 339 bits (869), Expect = 5.600e-116
Identity = 172/220 (78.18%), Postives = 191/220 (86.82%), Query Frame = 1
Query:   22 KLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            KLAI++IAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA++GLVTLH N+GA+VTRP+A EARDLF TRRLVEPEIVRNVI RAC  DLA+LR HL  E  AR+ GDRRRIIRLSGQFHML+A +SGN FIEKLMAELCPLTCLIIAL+D PQTPACP+DEH  IV+AIA +D+E AI LMLHHL HIE AL LD   E  IHWE LYG
Sbjct:    7 KLAIDEIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQDGLVTLHPNKGAYVTRPTADEARDLFVTRRLVEPEIVRNVIKRACADDLAQLRAHLEKETEARRLGDRRRIIRLSGQFHMLMARLSGNSFIEKLMAELCPLTCLIIALFDEPQTPACPEDEHAMIVDAIAERDEERAIDLMLHHLHHIEQALHLDQQVESGIHWEALYG 226          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A8H9I2F6_9GAMM (Transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A8H9I2F6_9GAMM)

HSP 1 Score: 311 bits (798), Expect = 3.980e-105
Identity = 162/228 (71.05%), Postives = 187/228 (82.02%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPEL-DIHWETLYG 681
            MDA PTTK AIEQIAERITDAIMEHRLPPG+KL E++LA  F VSRTK+RQALT L+KEGLVTLH NRGA+VTRP+  EA DL  TRRL+EPEI+R VIARA   DL +L+ HL  E  AR+EG+RR II L+G+FHMLLAE+ GN FI+KLM+ELCPLTCLIIALYD+PQ PACP+DEH +IVEAI  +D E AI LMLHHL HI+ AL L V PE  DIHWE+L+G
Sbjct:    3 MDAAPTTKPAIEQIAERITDAIMEHRLPPGVKLGEDRLAQTFNVSRTKVRQALTSLSKEGLVTLHPNRGAYVTRPTRQEALDLMETRRLIEPEIIRQVIARATPKDLEKLKAHLEEEDRAREEGNRRLIISLTGKFHMLLAELGGNIFIQKLMSELCPLTCLIIALYDAPQMPACPEDEHARIVEAIINKDVEKAIHLMLHHLNHIQDALHL-VDPEARDIHWESLFG 229          
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: UPI001C06CD38 (GntR family transcriptional regulator n=1 Tax=Amphritea atlantica TaxID=355243 RepID=UPI001C06CD38)

HSP 1 Score: 305 bits (782), Expect = 1.010e-102
Identity = 151/227 (66.52%), Postives = 180/227 (79.30%), Query Frame = 1
Query:    1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
            MD     K +IEQIA+RITDAIMEHRLPPG KL E+KLA AF VSRTKIRQA  +LA EGLVTLH NRGAFVT P+  + RD+F TRRL+EPEI+R+VIARA   D+ARLR+HL  EA AR+  DRRR+IRLSG+FH+LLAE++GN+ I KLM ELCPLTCLIIALYD P+ PACP+DEH QI++AI   D  TAI+LM  HL+HIE+ L +D   E DIHWE++Y 
Sbjct:    1 MDNSSMVKPSIEQIADRITDAIMEHRLPPGSKLAEDKLAGAFNVSRTKIRQAFILLANEGLVTLHPNRGAFVTSPTTEQTRDIFKTRRLIEPEIIRDVIARASSQDIARLRKHLEEEAKARRTDDRRRVIRLSGEFHLLLAELAGNQVINKLMTELCPLTCLIIALYDGPKIPACPEDEHTQIIDAIEANDSATAIKLMKRHLSHIENELNIDAYEERDIHWESIYS 227          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S0ZBY8_9GAMM1.660e-14391.63GntR family transcriptional regulator n=3 Tax=Halo... [more]
A0A0F9XDY9_9ZZZZ2.350e-13888.55HTH gntR-type domain-containing protein n=2 Tax=ro... [more]
A0A3B7LB10_9GAMM1.050e-12784.58GntR family transcriptional regulator n=2 Tax=uncl... [more]
A0A1P8R734_9GAMM3.010e-12784.68GntR family transcriptional regulator n=3 Tax=Halo... [more]
A0A0X8HBC0_9GAMM1.480e-12581.58Putative HTH-type transcriptional regulator YdfH n... [more]
A0A2N7UBI8_9GAMM1.160e-12279.30GntR family transcriptional regulator n=2 Tax=Halo... [more]
A0A1I4NSZ8_9GAMM6.080e-11877.09DNA-binding transcriptional regulator, GntR family... [more]
A0A7T0RI57_9GAMM5.600e-11678.18GntR family transcriptional regulator n=3 Tax=uncl... [more]
A0A8H9I2F6_9GAMM3.980e-10571.05Transcriptional regulator n=3 Tax=Halomonas TaxID=... [more]
UPI001C06CD381.010e-10266.52GntR family transcriptional regulator n=1 Tax=Amph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13756contigE-siliculosus-1a_F_contig13756:345..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size684
Model size684
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelBetaproteobacteria
COG Functional cat.K
EggNOG OGs1R96W@1224,2VQ74@28216,COG1802@1,COG1802@2
EggNOG free text desc.TRANSCRIPTIONal
Seed eggNOG ortholog381666.H16_B0878
Seed ortholog evalue1.7e-69
Seed ortholog score269.2
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.068045-CDS-E-siliculosus-1a_F_contig13756:344..10281622927890.068045-CDS-E-siliculosus-1a_F_contig13756:344..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13756 345..1028 -
1696318724.851358-CDS-E-siliculosus-1a_F_contig13756:344..10281696318724.851358-CDS-E-siliculosus-1a_F_contig13756:344..1028Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13756 345..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13756.2243.1prot_E-siliculosus-1a_F_contig13756.2243.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13756 345..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13756.2243.1

>prot_E-siliculosus-1a_F_contig13756.2243.1 ID=prot_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=228bp
MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIR
QALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIA
RACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIE
KLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLML
HHLAHIESALELDVVPELDIHWETLYG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig13756:345..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13756.2243.1 ID=mRNA_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13756:345..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCCGTCCCCACTACCAAGCTAGCCATTGAGCAAATAGCCGAGCG CATTACTGACGCTATCATGGAGCACCGACTGCCGCCCGGTATCAAGCTGG TTGAGGAGAAGCTGGCAACCGCCTTTGGTGTTAGCCGCACTAAGATTCGT CAGGCGCTCACCGTGCTTGCGAAAGAAGGGTTGGTGACACTGCACGCCAA TCGTGGCGCCTTCGTGACCCGTCCAAGCGCAGCTGAAGCACGTGACTTAT TCGCTACTCGCAGGCTTGTCGAGCCCGAGATAGTACGCAATGTCATCGCC CGCGCCTGCGAACATGACTTGGCACGGTTGCGTCAACATTTAGCCGCCGA GGCGAATGCCAGGCAGGAAGGGGATCGTCGAAGGATAATCCGTCTCTCTG GTCAGTTTCATATGCTTTTGGCAGAAGTTAGTGGCAATAAATTTATTGAA AAACTGATGGCTGAACTTTGTCCACTCACCTGCTTGATCATTGCGCTCTA TGACTCGCCCCAGACTCCAGCCTGCCCAGATGATGAACATAATCAGATCG TTGAGGCTATCGCACGGCAGGACCAAGAAACGGCTATTCGTCTTATGCTG CATCATCTGGCACATATCGAGAGCGCGCTTGAGCTTGACGTGGTGCCTGA GCTGGATATCCACTGGGAAACTCTTTATGGGTAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13756:345..1028-

>mRNA_E-siliculosus-1a_F_contig13756.2243.1 ID=mRNA_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13756:345..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGCCGTCCCCACTACCAAGCTAGCCATTGAGCAAATAGCCGAGCG
CATTACTGACGCTATCATGGAGCACCGACTGCCGCCCGGTATCAAGCTGG
TTGAGGAGAAGCTGGCAACCGCCTTTGGTGTTAGCCGCACTAAGATTCGT
CAGGCGCTCACCGTGCTTGCGAAAGAAGGGTTGGTGACACTGCACGCCAA
TCGTGGCGCCTTCGTGACCCGTCCAAGCGCAGCTGAAGCACGTGACTTAT
TCGCTACTCGCAGGCTTGTCGAGCCCGAGATAGTACGCAATGTCATCGCC
CGCGCCTGCGAACATGACTTGGCACGGTTGCGTCAACATTTAGCCGCCGA
GGCGAATGCCAGGCAGGAAGGGGATCGTCGAAGGATAATCCGTCTCTCTG
GTCAGTTTCATATGCTTTTGGCAGAAGTTAGTGGCAATAAATTTATTGAA
AAACTGATGGCTGAACTTTGTCCACTCACCTGCTTGATCATTGCGCTCTA
TGACTCGCCCCAGACTCCAGCCTGCCCAGATGATGAACATAATCAGATCG
TTGAGGCTATCGCACGGCAGGACCAAGAAACGGCTATTCGTCTTATGCTG
CATCATCTGGCACATATCGAGAGCGCGCTTGAGCTTGACGTGGTGCCTGA
GCTGGATATCCACTGGGAAACTCTTTATGGGTAAATGGACGCCGTCCCCA
CTACCAAGCTAGCCATTGAGCAAATAGCCGAGCGCATTACTGACGCTATC
ATGGAGCACCGACTGCCGCCCGGTATCAAGCTGGTTGAGGAGAAGCTGGC
AACCGCCTTTGGTGTTAGCCGCACTAAGATTCGTCAGGCGCTCACCGTGC
TTGCGAAAGAAGGGTTGGTGACACTGCACGCCAATCGTGGCGCCTTCGTG
ACCCGTCCAAGCGCAGCTGAAGCACGTGACTTATTCGCTACTCGCAGGCT
TGTCGAGCCCGAGATAGTACGCAATGTCATCGCCCGCGCCTGCGAACATG
ACTTGGCACGGTTGCGTCAACATTTAGCCGCCGAGGCGAATGCCAGGCAG
GAAGGGGATCGTCGAAGGATAATCCGTCTCTCTGGTCAGTTTCATATGCT
TTTGGCAGAAGTTAGTGGCAATAAATTTATTGAAAAACTGATGGCTGAAC
TTTGTCCACTCACCTGCTTGATCATTGCGCTCTATGACTCGCCCCAGACT
CCAGCCTGCCCAGATGATGAACATAATCAGATCGTTGAGGCTATCGCACG
GCAGGACCAAGAAACGGCTATTCGTCTTATGCTGCATCATCTGGCACATA
TCGAGAGCGCGCTTGAGCTTGACGTGGTGCCTGAGCTGGATATCCACTGG
GAAACTCTTTATGGGTAA
back to top