mRNA_E-siliculosus-1a_F_contig13756.2243.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A3S0ZBY8_9GAMM (GntR family transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A3S0ZBY8_9GAMM) HSP 1 Score: 409 bits (1050), Expect = 1.660e-143 Identity = 208/227 (91.63%), Postives = 216/227 (95.15%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
MDA PTTK IEQIAERITDA+MEHRLPPGIKLVEEKLA AFGVSRTKIRQALT+LAKEGLVTLHANRGAFVTRPSAAEARDLFATRRL+EPEIVRNVIARAC+HDL RLRQHL AEA+ARQEGDRR+IIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYD+PQTPACP+DEHNQIVEAIARQDQ AI LML HLAHIES LELDVVPELDIHWETLYG
Sbjct: 3 MDAAPTTKPGIEQIAERITDAVMEHRLPPGIKLVEEKLAKAFGVSRTKIRQALTLLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLIEPEIVRNVIARACDHDLIRLRQHLVAEADARQEGDRRKIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHNQIVEAIARQDQAAAICLMLRHLAHIESTLELDVVPELDIHWETLYG 229
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A0F9XDY9_9ZZZZ (HTH gntR-type domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A0F9XDY9_9ZZZZ) HSP 1 Score: 395 bits (1016), Expect = 2.350e-138 Identity = 201/227 (88.55%), Postives = 212/227 (93.39%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
MDAVPTTK AIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHL AE+ ARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYD+PQTPACP+DEH IV+AIA D+ AI+LMLHHL HIE L+LD P+ DIHWETLYG
Sbjct: 1 MDAVPTTKPAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLVAESEARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHKLIVDAIAAHDETEAIKLMLHHLEHIECELQLDTEPKRDIHWETLYG 227
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A3B7LB10_9GAMM (GntR family transcriptional regulator n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A3B7LB10_9GAMM) HSP 1 Score: 369 bits (946), Expect = 1.050e-127 Identity = 192/227 (84.58%), Postives = 204/227 (89.87%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
MDA T+KLAIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LAKEGLVTLH NRGAFVTRPSAAEARDLFATRRLVEPEIVRNVI RAC DLARLR HL EA AR++GDRRRIIRLSGQFHMLLA+VSGN FIEKLMAELCPLTCLIIALYD PQTPACP+DEH+ IVEAIA++D+ AI LMLHHL HIE AL LD E DIHWETLYG
Sbjct: 1 MDA-STSKLAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAKEGLVTLHPNRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIERACPGDLARLRAHLEEEAEARRQGDRRRIIRLSGQFHMLLAKVSGNSFIEKLMAELCPLTCLIIALYDEPQTPACPEDEHSDIVEAIAQRDETRAIALMLHHLHHIEQALHLDSPSERDIHWETLYG 226
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A1P8R734_9GAMM (GntR family transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A1P8R734_9GAMM) HSP 1 Score: 367 bits (943), Expect = 3.010e-127 Identity = 188/222 (84.68%), Postives = 198/222 (89.19%), Query Frame = 1
Query: 16 TTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
TTKLAIEQIAERITDA+MEHRLPPGIKLVEEKLA AFGVSRTKIRQALT+LAKEGLVTLH NRGAFV RPSA EARDLFATRRLVEPEIVRNVIARACE D+ARL QHL EA AR GDRRRIIRLSGQFHMLLA ++ N FIEKLMAELCPLTCLIIALYD+PQTPACP+DEH+QIVEAI D+ AIRLMLHHL HIES L LD P+LDIHWETLYG
Sbjct: 5 TTKLAIEQIAERITDAVMEHRLPPGIKLVEEKLAGAFGVSRTKIRQALTLLAKEGLVTLHPNRGAFVKRPSAEEARDLFATRRLVEPEIVRNVIARACEQDIARLHQHLEEEAQARATGDRRRIIRLSGQFHMLLAALADNAFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHSQIVEAIENHDEAAAIRLMLHHLEHIESELMLDAAPKLDIHWETLYG 226
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A0X8HBC0_9GAMM (Putative HTH-type transcriptional regulator YdfH n=1 Tax=Halomonas chromatireducens TaxID=507626 RepID=A0A0X8HBC0_9GAMM) HSP 1 Score: 363 bits (932), Expect = 1.480e-125 Identity = 186/228 (81.58%), Postives = 207/228 (90.79%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPEL-DIHWETLYG 681
M+A+PT K AIEQIA+ ITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA+EGLVTLHANRGAFVTRP+A EARDLFATRRLVEPEIVRNVIA+ACEHD+ARL QHLA EA AR GDRRRIIRLSGQFHMLLA ++GN FIEKLMAELCPLTCLIIALYD+PQTPACP+DEH+QIVEAIA D++TA+RLMLHHL HIE L+LD P +IHWE+LYG
Sbjct: 1 MEALPT-KPAIEQIADHITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQEGLVTLHANRGAFVTRPTADEARDLFATRRLVEPEIVRNVIAKACEHDIARLHQHLANEAQARLAGDRRRIIRLSGQFHMLLATLAGNAFIEKLMAELCPLTCLIIALYDAPQTPACPEDEHSQIVEAIAAHDEDTAVRLMLHHLDHIEKELQLDAQPSTPNIHWESLYG 227
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A2N7UBI8_9GAMM (GntR family transcriptional regulator n=2 Tax=Halomonas TaxID=2745 RepID=A0A2N7UBI8_9GAMM) HSP 1 Score: 356 bits (913), Expect = 1.160e-122 Identity = 180/227 (79.30%), Postives = 203/227 (89.43%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
M+ TK AIEQIAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA+EGLVTLH NRGAFVTRP+A+EARDLFATRRLVEPEIVR VI+RA E D+ARLR+HL E AR EGDRRRIIRLSG+FHMLLAE++GN FI+KLMAELCPLTCLIIALYD+PQTPACP+DEH++IV+AIA QD+ TAI LMLHHL HIE L+LD +P DIHWE+LYG
Sbjct: 1 METTSATKPAIEQIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQEGLVTLHPNRGAFVTRPTASEARDLFATRRLVEPEIVRCVISRASELDIARLREHLQQEDAARAEGDRRRIIRLSGRFHMLLAELAGNSFIQKLMAELCPLTCLIIALYDAPQTPACPEDEHSRIVDAIAAQDEATAIHLMLHHLKHIECELKLDAMPSRDIHWESLYG 227
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A1I4NSZ8_9GAMM (DNA-binding transcriptional regulator, GntR family n=1 Tax=Marinobacter zhejiangensis TaxID=488535 RepID=A0A1I4NSZ8_9GAMM) HSP 1 Score: 344 bits (882), Expect = 6.080e-118 Identity = 175/227 (77.09%), Postives = 196/227 (86.34%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
MD K + QIAERITDA+MEHRLPPGIKLVEEKLATAFGVSR KIRQAL++LAKEGLVTLHANRGAFVTRP+AAEARDLFATRRL+EPEIVRNVI RA + DL RL+ HL EA+ARQ+G+RRRIIRLSGQFHMLLA+ SGNKFIEK+M+ELCPLTCLIIALYD PQTPACP+DEH+QI+EAI R+D + AI+LML+HL HIE L LD DI WETLYG
Sbjct: 1 MDFSQPQKPDVAQIAERITDAVMEHRLPPGIKLVEEKLATAFGVSRAKIRQALSLLAKEGLVTLHANRGAFVTRPTAAEARDLFATRRLIEPEIVRNVIERASDEDLKRLQAHLTEEADARQQGNRRRIIRLSGQFHMLLAQASGNKFIEKMMSELCPLTCLIIALYDEPQTPACPEDEHSQIIEAITRKDTDRAIQLMLNHLEHIEKELHLDRPAARDIQWETLYG 227
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A7T0RI57_9GAMM (GntR family transcriptional regulator n=3 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A7T0RI57_9GAMM) HSP 1 Score: 339 bits (869), Expect = 5.600e-116 Identity = 172/220 (78.18%), Postives = 191/220 (86.82%), Query Frame = 1
Query: 22 KLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
KLAI++IAERITDA+MEHRLPPGIKLVEEKLA+AFGVSRTKIRQALT+LA++GLVTLH N+GA+VTRP+A EARDLF TRRLVEPEIVRNVI RAC DLA+LR HL E AR+ GDRRRIIRLSGQFHML+A +SGN FIEKLMAELCPLTCLIIAL+D PQTPACP+DEH IV+AIA +D+E AI LMLHHL HIE AL LD E IHWE LYG
Sbjct: 7 KLAIDEIAERITDAVMEHRLPPGIKLVEEKLASAFGVSRTKIRQALTLLAQDGLVTLHPNKGAYVTRPTADEARDLFVTRRLVEPEIVRNVIKRACADDLAQLRAHLEKETEARRLGDRRRIIRLSGQFHMLMARLSGNSFIEKLMAELCPLTCLIIALFDEPQTPACPEDEHAMIVDAIAERDEERAIDLMLHHLHHIEQALHLDQQVESGIHWEALYG 226
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: A0A8H9I2F6_9GAMM (Transcriptional regulator n=3 Tax=Halomonas TaxID=2745 RepID=A0A8H9I2F6_9GAMM) HSP 1 Score: 311 bits (798), Expect = 3.980e-105 Identity = 162/228 (71.05%), Postives = 187/228 (82.02%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPEL-DIHWETLYG 681
MDA PTTK AIEQIAERITDAIMEHRLPPG+KL E++LA F VSRTK+RQALT L+KEGLVTLH NRGA+VTRP+ EA DL TRRL+EPEI+R VIARA DL +L+ HL E AR+EG+RR II L+G+FHMLLAE+ GN FI+KLM+ELCPLTCLIIALYD+PQ PACP+DEH +IVEAI +D E AI LMLHHL HI+ AL L V PE DIHWE+L+G
Sbjct: 3 MDAAPTTKPAIEQIAERITDAIMEHRLPPGVKLGEDRLAQTFNVSRTKVRQALTSLSKEGLVTLHPNRGAYVTRPTRQEALDLMETRRLIEPEIIRQVIARATPKDLEKLKAHLEEEDRAREEGNRRLIISLTGKFHMLLAELGGNIFIQKLMSELCPLTCLIIALYDAPQMPACPEDEHARIVEAIINKDVEKAIHLMLHHLNHIQDALHL-VDPEARDIHWESLFG 229
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Match: UPI001C06CD38 (GntR family transcriptional regulator n=1 Tax=Amphritea atlantica TaxID=355243 RepID=UPI001C06CD38) HSP 1 Score: 305 bits (782), Expect = 1.010e-102 Identity = 151/227 (66.52%), Postives = 180/227 (79.30%), Query Frame = 1
Query: 1 MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRQALTVLAKEGLVTLHANRGAFVTRPSAAEARDLFATRRLVEPEIVRNVIARACEHDLARLRQHLAAEANARQEGDRRRIIRLSGQFHMLLAEVSGNKFIEKLMAELCPLTCLIIALYDSPQTPACPDDEHNQIVEAIARQDQETAIRLMLHHLAHIESALELDVVPELDIHWETLYG 681
MD K +IEQIA+RITDAIMEHRLPPG KL E+KLA AF VSRTKIRQA +LA EGLVTLH NRGAFVT P+ + RD+F TRRL+EPEI+R+VIARA D+ARLR+HL EA AR+ DRRR+IRLSG+FH+LLAE++GN+ I KLM ELCPLTCLIIALYD P+ PACP+DEH QI++AI D TAI+LM HL+HIE+ L +D E DIHWE++Y
Sbjct: 1 MDNSSMVKPSIEQIADRITDAIMEHRLPPGSKLAEDKLAGAFNVSRTKIRQAFILLANEGLVTLHPNRGAFVTSPTTEQTRDIFKTRRLIEPEIIRDVIARASSQDIARLRKHLEEEAKARRTDDRRRVIRLSGEFHLLLAELAGNQVINKLMTELCPLTCLIIALYDGPKIPACPEDEHTQIIDAIEANDSATAIKLMKRHLSHIENELNIDAYEERDIHWESIYS 227 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13756.2243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13756.2243.1 >prot_E-siliculosus-1a_F_contig13756.2243.1 ID=prot_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=228bp MDAVPTTKLAIEQIAERITDAIMEHRLPPGIKLVEEKLATAFGVSRTKIRback to top mRNA from alignment at E-siliculosus-1a_F_contig13756:345..1028- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13756.2243.1 ID=mRNA_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13756:345..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13756:345..1028- >mRNA_E-siliculosus-1a_F_contig13756.2243.1 ID=mRNA_E-siliculosus-1a_F_contig13756.2243.1|Name=mRNA_E-siliculosus-1a_F_contig13756.2243.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13756:345..1028- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |