mRNA_E-siliculosus-1a_F_contig13754.2242.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13754.2242.1
Unique NamemRNA_E-siliculosus-1a_F_contig13754.2242.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.080e-10
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLD 114
            Y KV+ WTR  D+F  KFV VP+   LHWSLACLCNLD
Sbjct:  726 YSKVQHWTRSVDLFKKKFVLVPVVEDLHWSLACLCNLD 763
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 2.020e-10
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLD 114
            Y KV+ WTR  D+F  KFV VP+   +HWSLACLCNLD
Sbjct:  424 YSKVQHWTRNVDLFKKKFVLVPVVEDMHWSLACLCNLD 461
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: A0A6G0XW91_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XW91_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.620e-8
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDA 117
            + KVKRWTR  +IF + F+F+PIN   HWSLA +CN  A
Sbjct:  377 FDKVKRWTRSVNIFELDFLFIPINESCHWSLAVICNPGA 415
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: I0YZW4_COCSC (ULP_PROTEASE domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZW4_COCSC)

HSP 1 Score: 56.6 bits (135), Expect = 3.040e-8
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDA 117
            + +VK+WT+G DIF M F+FVPI+  LHWSL  +CN  A
Sbjct:  411 HERVKKWTKGLDIFAMDFLFVPIHDHLHWSLLIVCNPGA 449
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: A0A7C9EA56_OPUST (Apyrase (Fragment) n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EA56_OPUST)

HSP 1 Score: 56.2 bits (134), Expect = 4.140e-8
Identity = 17/36 (47.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCN 108
            +++V++WTR  +IF M ++F+P+NY LHWSL  +C+
Sbjct:  429 FQRVRKWTRKVNIFEMDYIFIPVNYNLHWSLIVICH 464
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: UPI000CED1B1D (probable ubiquitin-like-specific protease 2B isoform X1 n=3 Tax=Morus notabilis TaxID=981085 RepID=UPI000CED1B1D)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-8
Identity = 17/36 (47.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCN 108
            +++V++WTR  D+F  +F+F+PIN+ LHWSL  +C+
Sbjct:  441 FQRVRKWTRKVDLFEKEFIFIPINFSLHWSLVVICH 476
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: A0A6A3B7I5_HIBSY (Cysteine proteinases superfamily protein, putative isoform 2 n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3B7I5_HIBSY)

HSP 1 Score: 55.8 bits (133), Expect = 5.650e-8
Identity = 18/36 (50.00%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCN 108
            Y++V +WTR  DIF   ++F+P+NY LHWSL  +C+
Sbjct:  455 YQRVHKWTRKVDIFEKDYIFIPVNYSLHWSLIVICH 490
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: W9S5J4_9ROSA (Putative ubiquitin-like-specific protease 2B n=1 Tax=Morus notabilis TaxID=981085 RepID=W9S5J4_9ROSA)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-8
Identity = 17/36 (47.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCN 108
            +++V++WTR  D+F  +F+F+PIN+ LHWSL  +C+
Sbjct:  396 FQRVRKWTRKVDLFEKEFIFIPINFSLHWSLVVICH 431
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: A0A498JAB1_MALDO (ULP_PROTEASE domain-containing protein n=8 Tax=Maleae TaxID=721813 RepID=A0A498JAB1_MALDO)

HSP 1 Score: 55.5 bits (132), Expect = 7.720e-8
Identity = 17/37 (45.95%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNL 111
            +++V++WTR  D+F   ++F+PIN+ LHWSL  +C+L
Sbjct:  441 FQRVRKWTRKVDLFERDYIFIPINFNLHWSLIVICHL 477
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BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Match: UPI0008FD478D (probable ubiquitin-like-specific protease 2B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FD478D)

HSP 1 Score: 55.5 bits (132), Expect = 7.730e-8
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCN 108
            +++V++WTR  DIF   F+F+P+N+ LHWSL  LC+
Sbjct:  426 FQRVRKWTRKVDIFAKDFIFIPVNFNLHWSLIVLCH 461
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13754.2242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD8_9PHAE1.080e-1065.79ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI2.020e-1063.16ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6G0XW91_9STRA1.620e-856.41ULP_PROTEASE domain-containing protein n=1 Tax=Aph... [more]
I0YZW4_COCSC3.040e-856.41ULP_PROTEASE domain-containing protein n=1 Tax=Coc... [more]
A0A7C9EA56_OPUST4.140e-847.22Apyrase (Fragment) n=3 Tax=Opuntia streptacantha T... [more]
UPI000CED1B1D5.650e-847.22probable ubiquitin-like-specific protease 2B isofo... [more]
A0A6A3B7I5_HIBSY5.650e-850.00Cysteine proteinases superfamily protein, putative... [more]
W9S5J4_9ROSA5.680e-847.22Putative ubiquitin-like-specific protease 2B n=1 T... [more]
A0A498JAB1_MALDO7.720e-845.95ULP_PROTEASE domain-containing protein n=8 Tax=Mal... [more]
UPI0008FD478D7.730e-850.00probable ubiquitin-like-specific protease 2B isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13754contigE-siliculosus-1a_F_contig13754:1127..1243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size117
Model size117
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.22.68
EggNOG OGsCOG5160@1,KOG0779@2759
EggNOG free text desc.protein modification by small protein removal
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
KEGG koko:K08596
Seed eggNOG ortholog2880.D8LDN6
Seed ortholog evalue7.1e-08
Seed ortholog score62.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927890.0319312-CDS-E-siliculosus-1a_F_contig13754:1126..12431622927890.0319312-CDS-E-siliculosus-1a_F_contig13754:1126..1243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13754 1127..1243 +
1696318724.838906-CDS-E-siliculosus-1a_F_contig13754:1126..12431696318724.838906-CDS-E-siliculosus-1a_F_contig13754:1126..1243Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13754 1127..1243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13754.2242.1prot_E-siliculosus-1a_F_contig13754.2242.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13754 1127..1243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13754.2242.1

>prot_E-siliculosus-1a_F_contig13754.2242.1 ID=prot_E-siliculosus-1a_F_contig13754.2242.1|Name=mRNA_E-siliculosus-1a_F_contig13754.2242.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp
YRKVKRWTRGADIFNMKFVFVPINYRLHWSLACLCNLDA
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mRNA from alignment at E-siliculosus-1a_F_contig13754:1127..1243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13754.2242.1 ID=mRNA_E-siliculosus-1a_F_contig13754.2242.1|Name=mRNA_E-siliculosus-1a_F_contig13754.2242.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=117bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13754:1127..1243+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TATCGGAAGGTTAAGCGTTGGACCCGGGGCGCTGATATCTTCAACATGAA
GTTTGTCTTCGTGCCGATCAACTACAGGTTGCACTGGAGCCTTGCGTGCC
TCTGCAACCTTGACGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13754:1127..1243+

>mRNA_E-siliculosus-1a_F_contig13754.2242.1 ID=mRNA_E-siliculosus-1a_F_contig13754.2242.1|Name=mRNA_E-siliculosus-1a_F_contig13754.2242.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13754:1127..1243+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TATCGGAAGGTTAAGCGTTGGACCCGGGGCGCTGATATCTTCAACATGAA
GTTTGTCTTCGTGCCGATCAACTACAGGTTGCACTGGAGCCTTGCGTGCC
TCTGCAACCTTGACGCTTATCGGAAGGTTAAGCGTTGGACCCGGGGCGCT
GATATCTTCAACATGAAGTTTGTCTTCGTGCCGATCAACTACAGGTTGCA
CTGGAGCCTTGCGTGCCTCTGCAACCTTGACGCT
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