mRNA_E-siliculosus-1a_F_contig1373.2237.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1373.2237.1
Unique NamemRNA_E-siliculosus-1a_F_contig1373.2237.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 6.910e-161
Identity = 255/263 (96.96%), Postives = 256/263 (97.34%), Query Frame = 1
Query:    1 VADIRPSALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            VADIRPSALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRK IKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDE      D+K
Sbjct:  261 VADIRPSALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKKIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEDHYGLDDIK 523          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A835YRA9_9STRA (Lon protease homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA9_9STRA)

HSP 1 Score: 286 bits (731), Expect = 6.510e-87
Identity = 154/258 (59.69%), Postives = 205/258 (79.46%), Query Frame = 1
Query:   19 SALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGE-FDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            ++L    QLLL   +R+   +VVSLGPPL+VEV+    G+ +DA S+VI+AYCQEIL+T++++V LNPLLRE ITFF++  IN+ +PF +AD AAT+++     LQAVL E N E+RLR+AL++ISKERE+ RLQ++I++QV++KMT Q+R YFL EQ+KSIKKELGLEKDDKEA+LNKFR+R +  +++ K+A KA+EEELEKLSSLEKNS EFN T++YLDWLT LPWG  S +NFDLK+AK+ LDE      D+K
Sbjct:  106 TSLETGAQLLLSSRQRIKFSKVVSLGPPLQVEVESSLVGDPYDASSDVIKAYCQEILATIRDLVKLNPLLRENITFFTQ-TINMQDPFLVADFAATITTADGHDLQAVLEEMNVEERLRMALELISKERELSRLQKEIQKQVEEKMTLQQRNYFLMEQMKSIKKELGLEKDDKEALLNKFRERMEACEDLGKDARKAMEEELEKLSSLEKNSQEFNTTRNYLDWLTCLPWGKTSQENFDLKRAKQILDEDHYGLDDIK 362          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A7S4HR69_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR69_9STRA)

HSP 1 Score: 237 bits (605), Expect = 2.630e-72
Identity = 125/259 (48.26%), Postives = 187/259 (72.20%), Query Frame = 1
Query:   28 PGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSE-----VIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            P    +LL  HRR+ ++ V ++GPP++++V HW+  +++   E      IRA   E+LST+++V  +NPL RE + +F  R I+  +P++LAD  AT+++GSP++LQAVL E++ E RL  AL +ISKEREV +LQQ+I  +V++KM++ +R YFL EQLKSIKKELG+E+DDKEA+++K+R + K+  +I +EA   I+ ELEKLS+LEKNS EFN T+SYLDWLT +PWG+ S + FD+++A+  LD       D+K
Sbjct:  139 PSSASVLLYTHRRIDLQSVENVGPPIDLKVSHWDRLQYNPKGESKVDDTIRALTNEVLSTIRDVAQMNPLFREHLQYFPNR-IDPSDPYRLADFVATVTTGSPEELQAVLEEKDAELRLHKALVLISKEREVSKLQQEISAKVEEKMSDAQRKYFLNEQLKSIKKELGMEQDDKEALIDKYRKKLKDYPQIPEEAMGVIDSELEKLSTLEKNSTEFNVTRSYLDWLTAIPWGNMSDETFDIREARTILDRDHYGLDDLK 396          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A7S1BLT3_9STRA (Lon protease homolog n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLT3_9STRA)

HSP 1 Score: 246 bits (629), Expect = 2.990e-72
Identity = 134/254 (52.76%), Postives = 184/254 (72.44%), Query Frame = 1
Query:   31 GEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDA-DSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            G+  +LL+GHRR+++  V  LGPP++V V+HW+    D   S+++RA   EI+S ++EV  LNPL RE I +F  R ++ ++P KLAD AA++++GS  +LQ VL E++PE RL  AL +++KEREV RLQQ+I  QV+ KMT  +R YFL EQLKSIKKELG+EKDDK+A+L K+R +     EI +EA +AIE ELEKLS+LEKNS EFN T++YLDWLT+LPW  A+ + +DL +A+E LD       DVK
Sbjct:  121 GQASVLLLGHRRVTLTSVDRLGPPVDVTVEHWDRIVTDPFQSDMVRALSNEIVSMIREVATLNPLFREHIHYFPTR-VDSNDPMKLADFAASMTTGSAGELQGVLAEKDPEARLHKALTLLTKEREVSRLQQEISAQVEAKMTEAQRRYFLTEQLKSIKKELGMEKDDKDALLGKYRQKLAAFTEIPEEARRAIEAELEKLSALEKNSAEFNVTRTYLDWLTELPWDTATPERYDLARAREILDRQHYGLDDVK 373          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A225UKP0_9STRA (Lon protease (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UKP0_9STRA)

HSP 1 Score: 236 bits (601), Expect = 5.580e-71
Identity = 122/255 (47.84%), Postives = 185/255 (72.55%), Query Frame = 1
Query:   31 GEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIK--EITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
              VQ+L+V  RR++I ++   GPPL V + + +   FD+ S++IRAY  EI++T++E+V +NPL ++ + +FS+R I++HNP+KLAD AA+++S   ++LQ V+ E + E RL+ AL++I+KE E+ ++QQ IK+QV++K++  +R Y L EQLK+IKKELG+EKDDK+A++ K+R+R        I     + +E+EL K+S LEKNS EFN T++YLDWLTQLPWG A+ +NFDL KAK+ LDE      D+K
Sbjct:    7 NSVQVLMVSQRRIAIDDIRDEGPPLRVNISNLDNPPFDSKSKLIRAYSNEIVATLREIVKMNPLFKDHMQYFSQR-IDIHNPYKLADFAASVTSADGEELQQVMEEMSCEARLKKALELITKELELSKVQQTIKEQVEEKVSKNQRNYLLMEQLKAIKKELGMEKDDKDAMITKYRERLAGFAPGSIPDNVNEVVEDELNKMSMLEKNSSEFNVTRNYLDWLTQLPWGKATEENFDLAKAKQILDEDHYGLKDIK 260          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A4D9CTF9_9STRA (Lon protease homolog, mitochondrial n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTF9_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.270e-70
Identity = 136/263 (51.71%), Postives = 190/263 (72.24%), Query Frame = 1
Query:    1 VADIRPSALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            V +  P  + G+V  +LV HRR+ I   ++LGPPL V+V H     +D DS +I+AY  E++STV+E+V +NPL +E   F++++ I++ +PF+LAD AATLS+    +LQ VL E + E+RL  AL +I KE E+ ++QQ+I+QQV+ K++ ++R YFL EQLK IKKELG+EKDDKEA+L KFR+R K ++ + K A+ AI+EELEKL SLEKNS EFN T++YL+WLT LPWG  S +NFDLK+AK  LDE      D+K
Sbjct:  210 VQNTIPLGMGGQV--VLVSHRRIKIDGSIALGPPLRVKVSHLEGRAYDPDSTLIKAYSNEVVSTVRELVKVNPLFKEHFNFYTQK-IDIVDPFRLADFAATLSTAEGKELQEVLEELDAEKRLNKALILIKKELELGKIQQEIQQQVEAKISQKQREYFLMEQLKYIKKELGMEKDDKEALLTKFRERIKTLQ-VPKLAQAAIDEELEKLESLEKNSSEFNVTRNYLEWLTSLPWGVTSEENFDLKRAKVILDEDHYGLQDIK 468          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A7S4HQU0_9STRA (Hypothetical protein (Fragment) n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQU0_9STRA)

HSP 1 Score: 237 bits (605), Expect = 6.120e-70
Identity = 125/259 (48.26%), Postives = 187/259 (72.20%), Query Frame = 1
Query:   28 PGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSE-----VIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            P    +LL  HRR+ ++ V ++GPP++++V HW+  +++   E      IRA   E+LST+++V  +NPL RE + +F  R I+  +P++LAD  AT+++GSP++LQAVL E++ E RL  AL +ISKEREV +LQQ+I  +V++KM++ +R YFL EQLKSIKKELG+E+DDKEA+++K+R + K+  +I +EA   I+ ELEKLS+LEKNS EFN T+SYLDWLT +PWG+ S + FD+++A+  LD       D+K
Sbjct:  258 PSSASVLLYTHRRIDLQSVENVGPPIDLKVSHWDRLQYNPKGESKVDDTIRALTNEVLSTIRDVAQMNPLFREHLQYFPNR-IDPSDPYRLADFVATVTTGSPEELQAVLEEKDAELRLHKALVLISKEREVSKLQQEISAKVEEKMSDAQRKYFLNEQLKSIKKELGMEQDDKEALIDKYRKKLKDYPQIPEEAMGVIDSELEKLSTLEKNSTEFNVTRSYLDWLTAIPWGNMSDETFDIREARTILDRDHYGLDDLK 515          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A7S2U8I2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8I2_9STRA)

HSP 1 Score: 229 bits (583), Expect = 7.230e-69
Identity = 127/237 (53.59%), Postives = 177/237 (74.68%), Query Frame = 1
Query:   43 LLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDA---DS-EVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLS-SGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKE--ITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFD 732
            LLL+GHRR+ +  V  +GPP++V V HW+  E+ A   DS ++IRA   EILST++EV  LNPL R+++ FF  R ++ ++P++LAD AA+++ SG+ ++LQAVL E++PE+RL  AL ++ KEREV +LQQ+I  +V++KMT  +R YFL EQLKSIKKELG+EKDDKE ++ K+R + K   +  I KE  + IE E+EKLS+LEKNS EFN T+SYLDWLT +PWG  S +NFD
Sbjct:  237 LLLMGHRRIDLLSVDEVGPPIDVTVSHWDRLEYSAKEGDSPDMIRAITNEILSTIREVAQLNPLFRDQVQFFPTR-VDANDPYRLADFAASITTSGTSEELQAVLEERDPERRLHKALCLLVKEREVSKLQQEISAKVEEKMTASQRKYFLMEQLKSIKKELGMEKDDKETLIEKYRKKLKEFADDAIPKEVNEVIESEMEKLSTLEKNSSEFNVTRSYLDWLTGIPWGVTSEENFD 472          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A7S4RFD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RFD6_9STRA)

HSP 1 Score: 233 bits (595), Expect = 7.640e-69
Identity = 126/252 (50.00%), Postives = 184/252 (73.02%), Query Frame = 1
Query:   49 LVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEV---IRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKE--ITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
            L+ HRR+ +  + S+GPP++V V HW+  +++    V   IRA   EILST++E+  LN L RE I+FF  R I+ ++P++LAD AA++++G+P++LQAVL E++ E RL  AL ++SKEREV +LQQ+I+ +V++KMT  +R YFL EQLKSIKKELG+EKDDKEA++ K+R + K   +  I++E  + I+ E+EKLS+LEKNS EFN T+SYLDWLT +PWG  S +NFD++ A++ LD       +VK
Sbjct:  279 LLAHRRIDLTSIDSVGPPIDVTVSHWDRLDYNFKGGVDDTIRALTNEILSTIREIATLNSLFREHISFFPTR-IDANDPYRLADFAASITTGTPEELQAVLEERDAEMRLHKALVLLSKEREVSKLQQEIQAKVEEKMTEAQRKYFLTEQLKSIKKELGMEKDDKEALIQKYRKKLKTYSKDAISQEVMETIDSEIEKLSTLEKNSSEFNVTRSYLDWLTNIPWGIFSKENFDIRDARKVLDRDHYGLDEVK 529          
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Match: A0A8K1CMW1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMW1_PYTOL)

HSP 1 Score: 237 bits (604), Expect = 2.020e-68
Identity = 125/255 (49.02%), Postives = 186/255 (72.94%), Query Frame = 1
Query:   31 GEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDADSEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAATLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIK--EITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKEGLDEVCTSWTDVK 789
              VQ+L+V  RR+ I  V  +GPPL V ++     +FD  S++IRAY  EI++T++E+V +NPL +E + +FS+R I++HNP+KLAD AA++++   ++LQ V+ E N E RL+ AL++I+KE E+ ++QQ IK+QV++K++  +R Y L EQLK+IKKELG+EKDDK+A++ K+R+R    +   I     + +EEEL K+S LEKNS EFN T++YLDWLTQLPWG ++ +NFDLKKAK+ LDE     +D+K
Sbjct:  209 NSVQVLMVSQRRIVIDGVHDMGPPLRVSINPLENPDFDPKSKLIRAYSNEIVATLREIVKMNPLFKEHMQYFSQR-IDIHNPYKLADFAASVTTADGEELQQVMEEMNCELRLKKALELITKELELSKVQQVIKEQVEEKVSKNQRQYLLMEQLKAIKKELGMEKDDKDAMITKYRERLDAFEPGSIPANVLEVVEEELNKMSMLEKNSSEFNVTRNYLDWLTQLPWGKSTEENFDLKKAKQILDEDHYGLSDIK 462          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNJ6_ECTSI6.910e-16196.96Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YRA9_9STRA6.510e-8759.69Lon protease homolog n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4HR69_9STRA2.630e-7248.26Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1BLT3_9STRA2.990e-7252.76Lon protease homolog n=2 Tax=Corethron hystrix Tax... [more]
A0A225UKP0_9STRA5.580e-7147.84Lon protease (Fragment) n=1 Tax=Phytophthora megak... [more]
A0A4D9CTF9_9STRA1.270e-7051.71Lon protease homolog, mitochondrial n=1 Tax=Nannoc... [more]
A0A7S4HQU0_9STRA6.120e-7048.26Hypothetical protein (Fragment) n=3 Tax=Odontella ... [more]
A0A7S2U8I2_9STRA7.230e-6953.59Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4RFD6_9STRA7.640e-6950.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A8K1CMW1_PYTOL2.020e-6849.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1373contigE-siliculosus-1a_F_contig1373:30692..32983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size789
Model size789
Exons4
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.21.53
Ec32 orthologEc-01_005200.1
Ec32 ortholog descriptionPim1 homolog, ATP-dependent protease
EggNOG OGsCOG0466@1,KOG2004@2759
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
KEGG koko:K08675
Preferred namePIM1
Seed eggNOG ortholog2880.D7FNJ6
Seed ortholog evalue1.1e-133
Seed ortholog score482.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1373.2237.1prot_E-siliculosus-1a_F_contig1373.2237.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1373 30692..32983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927889.2657287-CDS-E-siliculosus-1a_F_contig1373:30691..308221622927889.2657287-CDS-E-siliculosus-1a_F_contig1373:30691..30822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 30692..30822 +
1696318724.3436193-CDS-E-siliculosus-1a_F_contig1373:30691..308221696318724.3436193-CDS-E-siliculosus-1a_F_contig1373:30691..30822Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 30692..30822 +
1622927889.281018-CDS-E-siliculosus-1a_F_contig1373:31145..314101622927889.281018-CDS-E-siliculosus-1a_F_contig1373:31145..31410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 31146..31410 +
1696318724.3579824-CDS-E-siliculosus-1a_F_contig1373:31145..314101696318724.3579824-CDS-E-siliculosus-1a_F_contig1373:31145..31410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 31146..31410 +
1622927889.2933073-CDS-E-siliculosus-1a_F_contig1373:32066..322491622927889.2933073-CDS-E-siliculosus-1a_F_contig1373:32066..32249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 32067..32249 +
1696318724.3662512-CDS-E-siliculosus-1a_F_contig1373:32066..322491696318724.3662512-CDS-E-siliculosus-1a_F_contig1373:32066..32249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 32067..32249 +
1622927889.3055406-CDS-E-siliculosus-1a_F_contig1373:32773..329831622927889.3055406-CDS-E-siliculosus-1a_F_contig1373:32773..32983Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 32774..32983 +
1696318724.3742566-CDS-E-siliculosus-1a_F_contig1373:32773..329831696318724.3742566-CDS-E-siliculosus-1a_F_contig1373:32773..32983Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 32774..32983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1373.2237.1

>prot_E-siliculosus-1a_F_contig1373.2237.1 ID=prot_E-siliculosus-1a_F_contig1373.2237.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=263bp
VADIRPSALPGEVQLLLVGHRRLSIKEVVSLGPPLEVEVDHWNTGEFDAD
SEVIRAYCQEILSTVQEVVVLNPLLRERITFFSERNINVHNPFKLADLAA
TLSSGSPDKLQAVLTEQNPEQRLRLALDIISKEREVLRLQQDIKQQVDQK
MTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKNIKEITKEAE
KAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQLPWGHASVDNFDLKKAKE
GLDEVCTSWTDVK
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mRNA from alignment at E-siliculosus-1a_F_contig1373:30692..32983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1373.2237.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2237.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2292bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:30692..32983+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGCCGATATCCGACCGTCGGCGCTGCCCGGAGAGGTGCAGCTGCTGCT GGTCGGGCACCGGCGCCTCTCGATCAAGGAGGTCGTCTCTCTCGGCCCAC CTCTGGAGGTGGAGGTGGACCACTGGAACACGTGCGTGCTCTCTCGATTT TTATTGGCTCTTGCTGTGGACTACTACTACTACTACTACTACTACTACTA CTACTACCACTACTACCACTACTTTTACTACTGCTGAGTGTTGTTGGCGT CCCATGGCGTGGTGTGATCGCTGGTGTTGCTTCGCTGCCGCCGTCGACTG GTCCCGTTTATCCTCGCGCATACCATAAGCGCATGACGGTTAACATGATC GCGATACTGTAGGTAGTAATCGTGCTCTTGCTTCTTAGCCTAGCTGGTAT GTACTCGCGCGTGGCCGACCCCCCGTCCCACCCCCACCATCGTCAACAAA CCAGCGGCGAGTTCGATGCAGATTCGGAAGTGATCCGCGCCTACTGCCAG GAGATCCTGAGCACGGTCCAAGAGGTGGTTGTCCTCAACCCTCTCCTGAG GGAGCGCATCACGTTCTTCAGCGAGCGAAACATCAACGTCCACAACCCCT TCAAGCTGGCCGACCTTGCGGCGACCCTCAGCTCGGGCAGCCCGGATAAG CTGCAGGCGGTGCTCACCGAGCAGAACCCGGAGCAACGCCTGCGCCTGGC GCTTGACATCATCTCCAAGGTGTGTCGGTGCACCTCTATTTTGTCGGTAT CTAGGGGTCTCATGGGAGAGTTGTCTCGTGTGTTGGGTTTGGGGGACTGC CTGTCGCTTGTTGACTCAATTCTTTTGTCGGGATTTCACGAGGAATTTGT TTTGGCTCACTGGCGTGTGTCTGTCTTTGGTTGTGTTATGGTAGGGTTTC CATCCGAAAAGGATAGGGAAGGGGGTGGAGTGCATGGTGGGGGAGGGGTC TTCTGCGGGTGCGTTGTTACGTTTTGTGTCCTTTTATTGTCGTTTTTGTC GTCGCAGTCGTAGTTGTACTTTGTTTTTGATTCCATTTTTGGTGCCGAGG TCTCGTTGCGCGATATTCCGCCCCGATGTGTAGTTATGTGTAAGAACAAC GTGCTAAGTGTTGTCGATGTCTGCGGGAGAGCGAGAGGTTCTTCGCCTGC GGCAGCGGGACATCAAGTACAGTAGCACGCTTAGCCGACCCTTTTTCGCA TGTGGTTGCTTCGCGGTCATTTGTTTTTACGCAGGTACTATGGCCCCTGT GTCATATTTTTCGCAGTTAGGTCGCTTCTGCCAGCGGAGATAACTCTCCA GGACAAATATCCTAGCGAACCCTTCATGGTATGAGTATGGCTTGATTTGT TTTGTTCTTCTGCTTGCAACCGCAGGAAAGGGAGGTGCTCCGGCTGCAGC AGGACATCAAGCAGCAGGTGGACCAGAAGATGACAAATCAGAAGAGGACC TACTTCTTGCAGGAGCAGCTCAAGTCGATCAAGAAGGAGCTGGGGCTGGA GAAGGACGATAAGGAGGCCATCCTCAACAAGTTCCGGGACAGAAGGAAAA ATATCAAGGTCTGGTGGTGTGTTGGAAGTGGACGAAAAGCACAAACGAAT ATTGGTGTTCCGACTTTCGCTGAAACGAGTAAGAGTGGATGGGCAGAAGG ACGAAAGTGTAAGTGTACAACAGTTGGATAATTAATAGAGAGATGGGACG GATGGGACAAGCAAACAGGAGGCCAACGGTAGTTTGTGAAGACGGGCGAG ACGTTTGGAACAGAAGAAAAAAACAGATTTTGATGGTTTGGAATCGGGGA GAAGAGAAATGGAGGTACGGAAGAGTTTGGCCTCAAGATTTGATGATTTT GCAAATGGCCAGCGAGCTTCGACATGAACGGACGGAGCGACATACATACA GAGCAAGACATATACACAGACAAACAGCAAAAACGCACAGAGTCGACAGC CGGCAACCCAGGGGGGCTGTGTCGGTCCCCGCCTTTTTCTCTTGTTGCAC CCAACACGACGCCACCACCGCACGCACGCCTCTACCGCCACGGTACGGTA TGCATACAAAACGGTTCGTTTTTGTGCACCAGGAGATTACGAAGGAAGCG GAGAAGGCGATCGAGGAGGAGCTTGAGAAGCTGTCGTCCCTGGAGAAGAA CAGCCCGGAGTTCAACGGCACCAAGAGCTACCTCGACTGGCTGACCCAGC TGCCGTGGGGGCACGCCTCGGTGGACAACTTCGACCTCAAGAAGGCCAAG GAGGGGCTCGACGAGGTTTGTACATCATGGACGGATGTGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1373:30692..32983+

>mRNA_E-siliculosus-1a_F_contig1373.2237.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2237.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2237.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:30692..32983+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGCCGATATCCGACCGTCGGCGCTGCCCGGAGAGGTGCAGCTGCTGCT
GGTCGGGCACCGGCGCCTCTCGATCAAGGAGGTCGTCTCTCTCGGCCCAC
CTCTGGAGGTGGAGGTGGACCACTGGAACACGTGGCCGATATCCGACCGT
CGGCGCTGCCCGGAGAGGTGCAGCTGCTGCTGGTCGGGCACCGGCGCCTC
TCGATCAAGGAGGTCGTCTCTCTCGGCCCACCTCTGGAGGTGGAGGTGGA
CCACTGGAACACCGGCGAGTTCGATGCAGATTCGGAAGTGATCCGCGCCT
ACTGCCAGGAGATCCTGAGCACGGTCCAAGAGGTGGTTGTCCTCAACCCT
CTCCTGAGGGAGCGCATCACGTTCTTCAGCGAGCGAAACATCAACGTCCA
CAACCCCTTCAAGCTGGCCGACCTTGCGGCGACCCTCAGCTCGGGCAGCC
CGGATAAGCTGCAGGCGGTGCTCACCGAGCAGAACCCGGAGCAACGCCTG
CGCCTGGCGCTTGACATCATCTCCAAGCGGCGAGTTCGATGCAGATTCGG
AAGTGATCCGCGCCTACTGCCAGGAGATCCTGAGCACGGTCCAAGAGGTG
GTTGTCCTCAACCCTCTCCTGAGGGAGCGCATCACGTTCTTCAGCGAGCG
AAACATCAACGTCCACAACCCCTTCAAGCTGGCCGACCTTGCGGCGACCC
TCAGCTCGGGCAGCCCGGATAAGCTGCAGGCGGTGCTCACCGAGCAGAAC
CCGGAGCAACGCCTGCGCCTGGCGCTTGACATCATCTCCAAGGAAAGGGA
GGTGCTCCGGCTGCAGCAGGACATCAAGCAGCAGGTGGACCAGAAGATGA
CAAATCAGAAGAGGACCTACTTCTTGCAGGAGCAGCTCAAGTCGATCAAG
AAGGAGCTGGGGCTGGAGAAGGACGATAAGGAGGCCATCCTCAACAAGTT
CCGGGACAGAAGGAAAAATATCAAGGAAAGGGAGGTGCTCCGGCTGCAGC
AGGACATCAAGCAGCAGGTGGACCAGAAGATGACAAATCAGAAGAGGACC
TACTTCTTGCAGGAGCAGCTCAAGTCGATCAAGAAGGAGCTGGGGCTGGA
GAAGGACGATAAGGAGGCCATCCTCAACAAGTTCCGGGACAGAAGGAAAA
ATATCAAGGAGATTACGAAGGAAGCGGAGAAGGCGATCGAGGAGGAGCTT
GAGAAGCTGTCGTCCCTGGAGAAGAACAGCCCGGAGTTCAACGGCACCAA
GAGCTACCTCGACTGGCTGACCCAGCTGCCGTGGGGGCACGCCTCGGTGG
ACAACTTCGACCTCAAGAAGGCCAAGGAGGGGCTCGACGAGGTTTGTACA
TCATGGACGGATGTGAAGGAGATTACGAAGGAAGCGGAGAAGGCGATCGA
GGAGGAGCTTGAGAAGCTGTCGTCCCTGGAGAAGAACAGCCCGGAGTTCA
ACGGCACCAAGAGCTACCTCGACTGGCTGACCCAGCTGCCGTGGGGGCAC
GCCTCGGTGGACAACTTCGACCTCAAGAAGGCCAAGGAGGGGCTCGACGA
GGTTTGTACATCATGGACGGATGTGAAG
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