mRNA_E-siliculosus-1a_F_contig1373.2234.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1373.2234.1
Unique NamemRNA_E-siliculosus-1a_F_contig1373.2234.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1373contigE-siliculosus-1a_F_contig1373:21818..22260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size381
Model size443
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1373.2234.1prot_E-siliculosus-1a_F_contig1373.2234.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1373 21871..22251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.417879-UTR-E-siliculosus-1a_F_contig1373:21817..218701622927888.417879-UTR-E-siliculosus-1a_F_contig1373:21817..21870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1373 21818..21870 +
1696318723.9703104-UTR-E-siliculosus-1a_F_contig1373:21817..218701696318723.9703104-UTR-E-siliculosus-1a_F_contig1373:21817..21870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1373 21818..21870 +
1622927888.4619224-UTR-E-siliculosus-1a_F_contig1373:22251..222601622927888.4619224-UTR-E-siliculosus-1a_F_contig1373:22251..22260Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1373 22252..22260 +
1696318723.9907763-UTR-E-siliculosus-1a_F_contig1373:22251..222601696318723.9907763-UTR-E-siliculosus-1a_F_contig1373:22251..22260Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1373 22252..22260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.4390993-CDS-E-siliculosus-1a_F_contig1373:21870..222511622927888.4390993-CDS-E-siliculosus-1a_F_contig1373:21870..22251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 21871..22251 +
1696318723.981241-CDS-E-siliculosus-1a_F_contig1373:21870..222511696318723.981241-CDS-E-siliculosus-1a_F_contig1373:21870..22251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1373 21871..22251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1373.2234.1

>prot_E-siliculosus-1a_F_contig1373.2234.1 ID=prot_E-siliculosus-1a_F_contig1373.2234.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
MTKHSVELRTPRPAGTHFGGGVIPAISQMKGGKNTGSHCILQGQRVCICV
TVYCMKCTGFSGFMVKIFGFLWQIKRATKIGSGGHHHASVGEEAHNFPAT
TAARRLYPWWRHVMDRCATCGSICHA*
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mRNA from alignment at E-siliculosus-1a_F_contig1373:21818..22260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1373.2234.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2234.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=443bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:21818..22260+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTACTCGAGGAAGGCGTGACCGCAACCAGTCTTAAACGCGCCGTTCC
ACGATGACGAAACACAGTGTAGAGCTGAGAACTCCAAGGCCAGCTGGTAC
ACATTTCGGGGGGGGGGTGATACCGGCGATTTCGCAAATGAAAGGCGGAA
AGAACACAGGTTCACACTGTATTCTACAGGGCCAAAGGGTATGTATCTGT
GTTACTGTGTATTGCATGAAATGCACCGGCTTTTCAGGTTTCATGGTGAA
AATATTTGGTTTCCTCTGGCAGATAAAGAGGGCCACGAAAATAGGTAGTG
GGGGCCATCACCATGCATCTGTTGGAGAAGAAGCTCACAACTTCCCCGCA
ACAACAGCTGCACGGCGTCTGTATCCTTGGTGGCGGCACGTGATGGATCG
CTGTGCTACATGTGGATCGATTTGCCATGCGTGAGAAACACGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1373:21818..22260+

>mRNA_E-siliculosus-1a_F_contig1373.2234.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2234.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:21818..22260+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGAAACACAGTGTAGAGCTGAGAACTCCAAGGCCAGCTGGTACACA
TTTCGGGGGGGGGGTGATACCGGCGATTTCGCAAATGAAAGGCGGAAAGA
ACACAGGTTCACACTGTATTCTACAGGGCCAAAGGGTATGTATCTGTGTT
ACTGTGTATTGCATGAAATGCACCGGCTTTTCAGGTTTCATGGTGAAAAT
ATTTGGTTTCCTCTGGCAGATAAAGAGGGCCACGAAAATAGGTAGTGGGG
GCCATCACCATGCATCTGTTGGAGAAGAAGCTCACAACTTCCCCGCAACA
ACAGCTGCACGGCGTCTGTATCCTTGGTGGCGGCACGTGATGGATCGCTG
TGCTACATGTGGATCGATTTGCCATGCGTGAATGACGAAACACAGTGTAG
AGCTGAGAACTCCAAGGCCAGCTGGTACACATTTCGGGGGGGGGGTGATA
CCGGCGATTTCGCAAATGAAAGGCGGAAAGAACACAGGTTCACACTGTAT
TCTACAGGGCCAAAGGGTATGTATCTGTGTTACTGTGTATTGCATGAAAT
GCACCGGCTTTTCAGGTTTCATGGTGAAAATATTTGGTTTCCTCTGGCAG
ATAAAGAGGGCCACGAAAATAGGTAGTGGGGGCCATCACCATGCATCTGT
TGGAGAAGAAGCTCACAACTTCCCCGCAACAACAGCTGCACGGCGTCTGT
ATCCTTGGTGGCGGCACGTGATGGATCGCTGTGCTACATGTGGATCGATT
TGCCATGCGTGA
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