mRNA_E-siliculosus-1a_F_contig13722.2229.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13722.2229.1
Unique NamemRNA_E-siliculosus-1a_F_contig13722.2229.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: A0A5S3PRD5_9FLAO (Uncharacterized protein n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PRD5_9FLAO)

HSP 1 Score: 72.8 bits (177), Expect = 5.460e-14
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MK+ILLSLS IL +  +A AQKKSELI EIS LKSQLDS++NQVAEAQR EKASLA AES
Sbjct:    1 MKKILLSLSLILAIGTTAQAQKKSELIAEISTLKSQLDSVNNQVAEAQRKEKASLAKAES 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: A0A7H9AUK4_9FLAO (Uncharacterized protein n=1 Tax=Costertonia aggregata TaxID=343403 RepID=A0A7H9AUK4_9FLAO)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-8
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MK+ +L    +L ++IS  AQKKSELI EI NLKSQLDS+S +VA+A+R E ASLA AES
Sbjct:    1 MKKNILLFGSLLFISISLQAQKKSELIAEIDNLKSQLDSVSQEVAKARRAESASLAKAES 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: A0A3B0SVB1_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0SVB1_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 2.910e-7
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MKR+LLSL  +L    + +AQ+KSELI EI +LKSQLDS++ +V EA++NEK SLA A S
Sbjct:    1 MKRVLLSLCILLYAGTALHAQRKSELIAEIHDLKSQLDSVNAEVFEARKNEKVSLAEATS 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: A0A2G1YBY3_9FLAO (Uncharacterized protein n=1 Tax=Maribacter sp. TaxID=1897614 RepID=A0A2G1YBY3_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 7.550e-7
Identity = 31/60 (51.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            M RI+L+L  I+ ++ S +AQ+KSELI EI NLKSQ+DS+++++ +A++NEK S+  AES
Sbjct:    1 MNRIILTLCVIVSISCSLHAQRKSELIAEIENLKSQIDSVNSEMIKARKNEKVSMVRAES 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: A0A6L9EEF1_9FLAO (Uncharacterized protein n=1 Tax=Poritiphilus flavus TaxID=2697053 RepID=A0A6L9EEF1_9FLAO)

HSP 1 Score: 48.5 bits (114), Expect = 4.860e-5
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MK++LL LS I+   IS +AQKKSELI EI  LK +LDS  N V EA R E+AS A AES
Sbjct:    1 MKKLLL-LSLIIGSAISVHAQKKSELIAEIDELKQKLDSTQNLVTEANRKERASTARAES 59
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: UPI001C06890A (hypothetical protein n=1 Tax=Zobellia uliginosa TaxID=143224 RepID=UPI001C06890A)

HSP 1 Score: 48.1 bits (113), Expect = 6.710e-5
Identity = 28/60 (46.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MK  LL+L+ IL  ++S  AQ+KS+L+ EI+ LK QLDS++ ++ +A++NEK ++  AES
Sbjct:    1 MKHALLTLALILFASLSLQAQRKSDLLEEIAQLKMQLDSVNGEIFDARKNEKVAVTKAES 60
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BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Match: G0L462_ZOBGA (OmpA-like periplasmic protein n=2 Tax=Zobellia TaxID=112040 RepID=G0L462_ZOBGA)

HSP 1 Score: 47.8 bits (112), Expect = 9.240e-5
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRNEKASLATAES 180
            MK+ LL+L  I    IS  AQ+KS+L+ EI  LKSQLDS++ ++ +A++NEK ++A AES
Sbjct:    1 MKKSLLALGLIACTCISLQAQRKSDLLAEIDQLKSQLDSVNAEIFDARKNEKVAVAKAES 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13722.2229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A5S3PRD5_9FLAO5.460e-1476.67Uncharacterized protein n=1 Tax=Maribacter algarum... [more]
A0A7H9AUK4_9FLAO2.110e-861.67Uncharacterized protein n=1 Tax=Costertonia aggreg... [more]
A0A3B0SVB1_9ZZZZ2.910e-758.33Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A2G1YBY3_9FLAO7.550e-751.67Uncharacterized protein n=1 Tax=Maribacter sp. Tax... [more]
A0A6L9EEF1_9FLAO4.860e-560.00Uncharacterized protein n=1 Tax=Poritiphilus flavu... [more]
UPI001C06890A6.710e-546.67hypothetical protein n=1 Tax=Zobellia uliginosa Ta... [more]
G0L462_ZOBGA9.240e-550.00OmpA-like periplasmic protein n=2 Tax=Zobellia Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13722contigE-siliculosus-1a_F_contig13722:1066..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size180
Model size180
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927888.2806964-CDS-E-siliculosus-1a_F_contig13722:1065..12451622927888.2806964-CDS-E-siliculosus-1a_F_contig13722:1065..1245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13722 1066..1245 +
1696318723.8984988-CDS-E-siliculosus-1a_F_contig13722:1065..12451696318723.8984988-CDS-E-siliculosus-1a_F_contig13722:1065..1245Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13722 1066..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13722.2229.1prot_E-siliculosus-1a_F_contig13722.2229.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13722 1066..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13722.2229.1

>prot_E-siliculosus-1a_F_contig13722.2229.1 ID=prot_E-siliculosus-1a_F_contig13722.2229.1|Name=mRNA_E-siliculosus-1a_F_contig13722.2229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=60bp
MKRILLSLSCILLLNISANAQKKSELITEISNLKSQLDSLSNQVAEAQRN
EKASLATAES
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mRNA from alignment at E-siliculosus-1a_F_contig13722:1066..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13722.2229.1 ID=mRNA_E-siliculosus-1a_F_contig13722.2229.1|Name=mRNA_E-siliculosus-1a_F_contig13722.2229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=180bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13722:1066..1245+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAAGAATTTTACTTTCTCTTAGCTGTATCCTCCTTTTAAATATTTC
CGCAAATGCTCAAAAAAAGAGCGAACTAATTACCGAGATCAGCAACTTAA
AATCTCAACTCGATTCTTTAAGCAACCAAGTTGCAGAAGCCCAACGTAAT
GAAAAGGCTAGTCTTGCAACAGCAGAATCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13722:1066..1245+

>mRNA_E-siliculosus-1a_F_contig13722.2229.1 ID=mRNA_E-siliculosus-1a_F_contig13722.2229.1|Name=mRNA_E-siliculosus-1a_F_contig13722.2229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13722:1066..1245+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAAGAATTTTACTTTCTCTTAGCTGTATCCTCCTTTTAAATATTTC
CGCAAATGCTCAAAAAAAGAGCGAACTAATTACCGAGATCAGCAACTTAA
AATCTCAACTCGATTCTTTAAGCAACCAAGTTGCAGAAGCCCAACGTAAT
GAAAAGGCTAGTCTTGCAACAGCAGAATCCATGAAAAGAATTTTACTTTC
TCTTAGCTGTATCCTCCTTTTAAATATTTCCGCAAATGCTCAAAAAAAGA
GCGAACTAATTACCGAGATCAGCAACTTAAAATCTCAACTCGATTCTTTA
AGCAACCAAGTTGCAGAAGCCCAACGTAATGAAAAGGCTAGTCTTGCAAC
AGCAGAATCC
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