mRNA_E-siliculosus-1a_F_contig13708.2220.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13708.2220.1
Unique NamemRNA_E-siliculosus-1a_F_contig13708.2220.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A090WQ49_9FLAO (Probable acylaminoacyl-peptidase n=1 Tax=Jejuia pallidilutea TaxID=504487 RepID=A0A090WQ49_9FLAO)

HSP 1 Score: 198 bits (504), Expect = 1.720e-63
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIE 291
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYN EPHWPLK QNRKDF+IRMAQFFDYYLKG  KPVWME GVPA+EKG+NQGYEL+E
Sbjct:   67 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNEEPHWPLKYQNRKDFNIRMAQFFDYYLKGAPKPVWMERGVPAVEKGINQGYELLE 163
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A661XLV6_9BACT (S9 family peptidase (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661XLV6_9BACT)

HSP 1 Score: 194 bits (494), Expect = 1.320e-61
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIE 291
            KI+TPLL+MHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPLK QNRKDF+IRMAQFFDYYLK    PVWM+ GVPA+EKG+NQGYELIE
Sbjct:   94 KINTPLLVMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFNIRMAQFFDYYLKEAPMPVWMKRGVPAIEKGINQGYELIE 190
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A3D1KS05_9FLAO (Peptidase_S9 domain-containing protein n=1 Tax=Lutibacter sp. TaxID=1925666 RepID=A0A3D1KS05_9FLAO)

HSP 1 Score: 192 bits (488), Expect = 6.690e-61
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIE 291
            KI+TPLLIMHNDADGHVPWYQGIEFF  LRRLGKPSWFLNYN EPHWP+K QNRKDF+IRMAQFFDYYLKG  KPVWM+ GVPAMEKG+NQG ELI+
Sbjct:   75 KINTPLLIMHNDADGHVPWYQGIEFFTALRRLGKPSWFLNYNEEPHWPVKYQNRKDFNIRMAQFFDYYLKGDLKPVWMDRGVPAMEKGINQGLELIQ 171
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A411ECE7_9FLAO (S9 family peptidase n=2 Tax=Muriicola soli TaxID=2507538 RepID=A0A411ECE7_9FLAO)

HSP 1 Score: 196 bits (499), Expect = 4.930e-60
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIESSK 300
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPLK QNRKDF+IRMAQFFD+YLKG  KP WME GVPAMEKG+NQGYEL    K
Sbjct:  276 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFTIRMAQFFDHYLKGDPKPKWMERGVPAMEKGINQGYELTSPDK 375
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A4Q9FDK9_9FLAO (S9 family peptidase n=2 Tax=Bacteria TaxID=2 RepID=A0A4Q9FDK9_9FLAO)

HSP 1 Score: 202 bits (515), Expect = 1.060e-58
Identity = 87/101 (86.14%), Postives = 96/101 (95.05%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIESSKN 303
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPL+ QNRKDF+IRMAQFFDYYLKG AKPVWME GVPA+EKG+NQGYEL++ +K+
Sbjct:  829 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLQYQNRKDFNIRMAQFFDYYLKGAAKPVWMERGVPAVEKGINQGYELLKPTKD 929
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A5S3PUT5_9FLAO (S9 family peptidase n=1 Tax=Maribacter algarum TaxID=2578118 RepID=A0A5S3PUT5_9FLAO)

HSP 1 Score: 202 bits (514), Expect = 1.450e-58
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIE 291
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPLK QNRKDFSIRMAQFFDYYLKG +KP+WME GVPA+EKG+NQGYELI+
Sbjct:  831 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFSIRMAQFFDYYLKGNSKPIWMERGVPAIEKGINQGYELID 927
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A7Y1XMZ3_9FLAO (S9 family peptidase n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y1XMZ3_9FLAO)

HSP 1 Score: 194 bits (492), Expect = 1.900e-58
Identity = 83/97 (85.57%), Postives = 91/97 (93.81%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIE 291
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWP+K QNRKDF+IR++QFFDYYLKG  KPVWME GVPA+EKG+NQG EL+E
Sbjct:  326 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPVKFQNRKDFNIRLSQFFDYYLKGAPKPVWMERGVPAIEKGINQGLELME 422
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A7Y2AUE7_9FLAO (S9 family peptidase n=1 Tax=Eudoraea sp. TaxID=1979955 RepID=A0A7Y2AUE7_9FLAO)

HSP 1 Score: 201 bits (512), Expect = 2.830e-58
Identity = 88/99 (88.89%), Postives = 94/99 (94.95%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIESS 297
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPLK QNRKDF+IRMAQFFD+YLKG  KPVWME GVPAMEKGVNQGYEL++S+
Sbjct:  832 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFNIRMAQFFDHYLKGAPKPVWMERGVPAMEKGVNQGYELLKSA 930
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: UPI00166089AB (prolyl oligopeptidase family serine peptidase n=1 Tax=Maribacter sp. ANRC-HE7 TaxID=2737171 RepID=UPI00166089AB)

HSP 1 Score: 201 bits (510), Expect = 5.340e-58
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIESSK 300
            KIHTPLLIMHNDADGHVPWYQGIEFF  LRRLGKPSWFLNYNGEPHWPLK QNRKDF+IRMAQFFDYYL+G AKPVWME GVPAMEKGVNQG EL+++ +
Sbjct:  833 KIHTPLLIMHNDADGHVPWYQGIEFFTSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFNIRMAQFFDYYLQGAAKPVWMERGVPAMEKGVNQGLELMDAKE 932
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BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Match: A0A316DWJ7_9FLAO (Prolyl oligopeptidase family protein n=2 Tax=Maribacter TaxID=252356 RepID=A0A316DWJ7_9FLAO)

HSP 1 Score: 197 bits (502), Expect = 6.980e-57
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 KIHTPLLIMHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFSIRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELI 288
            KI+TPLLIMHNDADGHVPWYQGIEFFV LRRLGKPSWFLNYNGEPHWPLK QNRKDF+IRMAQFFDYYLKG  KPVWM+ GVPAMEKGVNQG ELI
Sbjct:  836 KINTPLLIMHNDADGHVPWYQGIEFFVSLRRLGKPSWFLNYNGEPHWPLKLQNRKDFNIRMAQFFDYYLKGAPKPVWMQRGVPAMEKGVNQGLELI 931
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13708.2220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A090WQ49_9FLAO1.720e-6388.66Probable acylaminoacyl-peptidase n=1 Tax=Jejuia pa... [more]
A0A661XLV6_9BACT1.320e-6186.60S9 family peptidase (Fragment) n=1 Tax=Bacteroidet... [more]
A0A3D1KS05_9FLAO6.690e-6185.57Peptidase_S9 domain-containing protein n=1 Tax=Lut... [more]
A0A411ECE7_9FLAO4.930e-6086.00S9 family peptidase n=2 Tax=Muriicola soli TaxID=2... [more]
A0A4Q9FDK9_9FLAO1.060e-5886.14S9 family peptidase n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A5S3PUT5_9FLAO1.450e-5889.69S9 family peptidase n=1 Tax=Maribacter algarum Tax... [more]
A0A7Y1XMZ3_9FLAO1.900e-5885.57S9 family peptidase n=1 Tax=Flavobacteriaceae bact... [more]
A0A7Y2AUE7_9FLAO2.830e-5888.89S9 family peptidase n=1 Tax=Eudoraea sp. TaxID=197... [more]
UPI00166089AB5.340e-5887.00prolyl oligopeptidase family serine peptidase n=1 ... [more]
A0A316DWJ7_9FLAO6.980e-5790.63Prolyl oligopeptidase family protein n=2 Tax=Marib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13708contigE-siliculosus-1a_F_contig13708:944..1249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size282
Model size306
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelFlavobacteriia
COG Functional cat.E
EggNOG OGs1HYH5@117743,4NDVD@976,COG1506@1,COG1506@2
EggNOG free text desc.Prolyl oligopeptidase family
Seed eggNOG ortholog504487.JCM19302_3721
Seed ortholog evalue1.3e-44
Seed ortholog score185.3
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927887.2564206-CDS-E-siliculosus-1a_F_contig13708:943..12251622927887.2564206-CDS-E-siliculosus-1a_F_contig13708:943..1225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13708 944..1225 -
1696318723.2378058-CDS-E-siliculosus-1a_F_contig13708:943..12251696318723.2378058-CDS-E-siliculosus-1a_F_contig13708:943..1225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13708 944..1225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927887.2722151-UTR-E-siliculosus-1a_F_contig13708:1225..12491622927887.2722151-UTR-E-siliculosus-1a_F_contig13708:1225..1249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13708 1226..1249 -
1696318723.2473178-UTR-E-siliculosus-1a_F_contig13708:1225..12491696318723.2473178-UTR-E-siliculosus-1a_F_contig13708:1225..1249Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13708 1226..1249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13708.2220.1prot_E-siliculosus-1a_F_contig13708.2220.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13708 944..1225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13708.2220.1

>prot_E-siliculosus-1a_F_contig13708.2220.1 ID=prot_E-siliculosus-1a_F_contig13708.2220.1|Name=mRNA_E-siliculosus-1a_F_contig13708.2220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=94bp
MHNDADGHVPWYQGIEFFVRLRRLGKPSWFLNYNGEPHWPLKQQNRKDFS
IRMAQFFDYYLKGTAKPVWMEHGVPAMEKGVNQGYELIESSKN*
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mRNA from alignment at E-siliculosus-1a_F_contig13708:944..1249-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13708.2220.1 ID=mRNA_E-siliculosus-1a_F_contig13708.2220.1|Name=mRNA_E-siliculosus-1a_F_contig13708.2220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13708:944..1249- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGATACATACACCCCTTTTAATTATGCACAATGACGCGGATGGTCATGT
ACCGTGGTATCAGGGAATCGAATTTTTCGTGAGGCTGCGTCGCTTGGGAA
AACCCTCTTGGTTCTTGAACTACAACGGAGAGCCCCATTGGCCCTTAAAA
CAGCAGAACCGAAAAGATTTTAGTATTCGAATGGCACAGTTCTTTGATTA
TTACTTAAAAGGTACCGCAAAACCAGTTTGGATGGAGCATGGGGTACCTG
CCATGGAGAAAGGAGTGAATCAAGGGTATGAATTGATAGAGTCTTCTAAA
AACTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13708:944..1249-

>mRNA_E-siliculosus-1a_F_contig13708.2220.1 ID=mRNA_E-siliculosus-1a_F_contig13708.2220.1|Name=mRNA_E-siliculosus-1a_F_contig13708.2220.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13708:944..1249- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACAATGACGCGGATGGTCATGTACCGTGGTATCAGGGAATCGAATT
TTTCGTGAGGCTGCGTCGCTTGGGAAAACCCTCTTGGTTCTTGAACTACA
ACGGAGAGCCCCATTGGCCCTTAAAACAGCAGAACCGAAAAGATTTTAGT
ATTCGAATGGCACAGTTCTTTGATTATTACTTAAAAGGTACCGCAAAACC
AGTTTGGATGGAGCATGGGGTACCTGCCATGGAGAAAGGAGTGAATCAAG
GGTATGAATTGATAGAGTCTTCTAAAAACTAAATGCACAATGACGCGGAT
GGTCATGTACCGTGGTATCAGGGAATCGAATTTTTCGTGAGGCTGCGTCG
CTTGGGAAAACCCTCTTGGTTCTTGAACTACAACGGAGAGCCCCATTGGC
CCTTAAAACAGCAGAACCGAAAAGATTTTAGTATTCGAATGGCACAGTTC
TTTGATTATTACTTAAAAGGTACCGCAAAACCAGTTTGGATGGAGCATGG
GGTACCTGCCATGGAGAAAGGAGTGAATCAAGGGTATGAATTGATAGAGT
CTTCTAAAAACTAA
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