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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig137.2212.1 vs. uniprot
Match: A0A6H5JIK3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK3_9PHAE) HSP 1 Score: 168 bits (426), Expect = 4.010e-48 Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1
Query: 25 MNAEPAAADTLRSERPDEVQIGVVVLPLVLSAALVTVVVAYRCFANRLRRDRLALERQEEVEEMKAARGREEAEEGRSPHRSAAMAGLGKDQYMSAYKKLLAQA 336
MNAE AAADTLRSE PDEVQIGV+VLPLVLSAALVTVVVAYRCFANRLRRDRLALERQ EVEE++AARGREEA EG SPHRSAAMAGLG+DQYMSAYKKLLAQA
Sbjct: 1 MNAELAAADTLRSEGPDEVQIGVIVLPLVLSAALVTVVVAYRCFANRLRRDRLALERQAEVEEIRAARGREEAGEGGSPHRSAAMAGLGEDQYMSAYKKLLAQA 104
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 315 |
| Model size | 1230 |
| Exons | 2 |
| Ec32 ortholog | Ec-07_007400.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig137.2212.1 >prot_E-siliculosus-1a_F_contig137.2212.1 ID=prot_E-siliculosus-1a_F_contig137.2212.1|Name=mRNA_E-siliculosus-1a_F_contig137.2212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
MNAEPAAADTLRSERPDEVQIGVVVLPLVLSAALVTVVVAYRCFANRLRR
DRLALERQEEVEEMKAARGREEAEEGRSPHRSAAMAGLGKDQYMSAYKKL
LAQA* back to topmRNA from alignment at E-siliculosus-1a_F_contig137:46710..49398- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig137.2212.1 ID=mRNA_E-siliculosus-1a_F_contig137.2212.1|Name=mRNA_E-siliculosus-1a_F_contig137.2212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2689bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:46710..49398- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGTGGTAGATCGTCCTACCCTCTATGAATGCCGAGCCGGCGGCGGCCGA
CACTCTGCGAAGCGAACGTCCCGATGAAGTGCAGATAGGCGTGGTCGTTC
TTCCTCTCGTGCTCTCTGCGGCCCTGGTGACTGTGGTGGTGGCGTACCGA
TGTTTCGCCAACAGGCTCAGGCGAGATCGCCTCGCCCTTGAGCGTCAAGA
GGAGGTCGAAGAGATGAAAGGTAACGAACATGAGTAGGGAGAGTTCAGTG
TCGTTCGCTCTCGTGGTGTTCGCGATGCCCTTCCAATATATTGGCAACCA
TTTTTGCGTCTTTGGCTGTTCGATACAAAGTGCACACTACTGTAAAGTTC
TACCGCTAGACCATGTGGTGCGGGATGTTTTCAGCCAAGTTGATGCTATC
GGCAGCCCAACACGCTGCCTATCGTAGGTTCTTCCTGATTCCTGCCGTGA
AGGAGGCACAGACATTGCCGAACATGACGTTTAAACTTGGCATTTGCATA
TTGCGTAGTAGCAGTTCTGTATGCGAAATCCTGGTTCAGAATTCAGAGCG
CTCGATGGGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGCAGTGGCG
GCGGCGACGGCTTGTGTACCCGTGCGGCAGCGTGCGCCTCGCGTTTCCAC
GTGTCTACTCTGCCCCATCAACACGGCCCGCCCCGTCACGCCTGGGTTAT
GTTTCTAGTGGTTTCCCACGCGGCTACCAATGTGTCTCTTTGTGCTACAG
CAGTGTATAAACGGCGCAATCATGAGCGTTTGCGTGCATAGAGAAAAGAG
AACCAAAATTTCTCACGATTTCGCGGAGGAAGGCACACAACATGTTCTAC
TCTGCACGCCCTACACATTCGAGTGGTTATACGTAAACCTCGGTCACGTA
ACGGTGGCTAGGTGGTTCATTCGGGGTATGCTCATAACCTGACGCTACTG
CCGTAGGCTGCAATCTCTCCGGCGGAATGAAAAATACTCGACAGCACATG
AAAAGTTAAGAGCACTGCCGTCACAAATTGAAGGCTAGCATCTCCGGGGG
AAGGTTGAAATTTCCTCCCGTATACCCTGGCTATCCTACCAAGATCCTAC
CAAGCAATGTCCAAAGGGTAAGGTATAGATGGGCATAGGAAAAGAAAAAT
ATCAATTGAAAAATATGGCCTACTCTCTACGCGATGTCAGAAATGATCGC
GTGCTCTTGAGTAGAAAGCGCATGCTCTTCCACAATCGTCGCCTCGTTTA
CTTGATGTTCAGCGAAAGAAGAGGGGCTCGGAATGTGCCGCGCCTGTGCC
TTCTCTGCCGCTCCTGATGACGAGGACCGGAGAATGCCCACCGTCGTCCT
CTCTCAAGTAACAACGTAACGCTTCTTTTTCCTACTTGGCGCCGCGATGT
GTGTGTGTTCGGGTGTGTTTTATTGTACCTTTAATGTTTGCATCGACCGC
TGCTGCTCAAAAACCAGCTATTCAATGAAAACACTTTCGCTCCGTTTCTT
ACACATCACACAAGTGTCCACATTGCCCTGACTCAACGTACCATGGGCGA
ATATCAATGGATGTTGTAGATGTCAGCTATCTTGGATCCAACACGCTTGT
TTGCCGTCTCTTGCTGTGGGACTACGATCCAGCCTTCAACACTCGCTCTG
CTTTCCCGGCCCCAACCCTTGTCCCGCAGCTGCTCGAGGGAGAGAAGAAG
CAGAGGAAGGGAGATCACCTCATCGAAGTGCTGCCATGGCGGGGCTGGGC
AAAGACCAATATATGTCGGCGTACAAGAAGCTATTGGCCCAGGCCTGAAA
ATAGAAAACGCTCGTATGGCTACTGATAAATACCTTGCTTGCTTTGAAGT
GTGGTGTCTGGGCACGGATATAACTGATTTTTTCGCCGTATAGCGTGCAG
GTTCAACAATGCTCGCAGAACCGAGCAAGGTGCAAGTGTTGTATCATACC
GGTCTACTCGTTCTGTAGACACGTCTGTATATAACTGAATTGAGTTTGGT
GCTTGATGTTTTCTGCGAACCTCGGTCGAGTTGAAAGCAGGGATGCGTGT
GTCCTCTTGCTGAGTAGATGCGGAGACCTATTCCGACGAACAGTTTGCCT
CCTCAACGAGTCTTTTTGTAAATACTAATACTTGGTCAACAAGCGCCAAG
GCAGTGTTGTTTTGTTTGCGCAAGGATTTCGAGTGCCGGGAAGTGTACGC
CCGAAGGGGGGCAAGGGTATGCTGGTGGGGAGTCGGTTCAGCGGCCTTTA
ACTTGAAGCCCCAGCCCCAACACGTAGACCTCTTCGAGGAAGCACGTAGA
CCCCTTCGAGGCATTCGTGGGGTGCTTCTTTAATGCGTGTACCCGTTTCG
CATATGATACGCTGTGAGGCCGCGAAAGGGGACGTACTTGCGCCTCTCGT
ATTGTACATGTGGTCCAAACAGCAGCTTCCCTCTTGACACGAGGGCATTC
GGCTATCAGGAGTGTGCCAGGTGTTGTGGCATCGAGCTTCTCGGTCTCCA
CATGTTTTCGAATCTGATACCGGAAGGTCTTGACGATTTCTACTGTAACA
ATGAGAAGCTTTCGTGCTCCCCGTTTTGCAGCCACAAGTGTTGGTGACTG
TTTGGCTTCCAACCTGTGCTGTGGTCGATTTGAAATCAGTTTGCACGCAA
CGAACATGGTCGTCATCTCTGATTGGGTGCACTACGCGC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig137:46710..49398- >mRNA_E-siliculosus-1a_F_contig137.2212.1 ID=mRNA_E-siliculosus-1a_F_contig137.2212.1|Name=mRNA_E-siliculosus-1a_F_contig137.2212.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:46710..49398- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATGCCGAGCCGGCGGCGGCCGACACTCTGCGAAGCGAACGTCCCGA
TGAAGTGCAGATAGGCGTGGTCGTTCTTCCTCTCGTGCTCTCTGCGGCCC
TGGTGACTGTGGTGGTGGCGTACCGATGTTTCGCCAACAGGCTCAGGCGA
GATCGCCTCGCCCTTGAGCGTCAAGAGGAGGTCGAAGAGATGAAAGATGA
ATGCCGAGCCGGCGGCGGCCGACACTCTGCGAAGCGAACGTCCCGATGAA
GTGCAGATAGGCGTGGTCGTTCTTCCTCTCGTGCTCTCTGCGGCCCTGGT
GACTGTGGTGGTGGCGTACCGATGTTTCGCCAACAGGCTCAGGCGAGATC
GCCTCGCCCTTGAGCGTCAAGAGGAGGTCGAAGAGATGAAAGCTGCTCGA
GGGAGAGAAGAAGCAGAGGAAGGGAGATCACCTCATCGAAGTGCTGCCAT
GGCGGGGCTGGGCAAAGACCAATATATGTCGGCGTACAAGAAGCTATTGG
CCCAGGCCTGACTGCTCGAGGGAGAGAAGAAGCAGAGGAAGGGAGATCAC
CTCATCGAAGTGCTGCCATGGCGGGGCTGGGCAAAGACCAATATATGTCG
GCGTACAAGAAGCTATTGGCCCAGGCCTGA back to top
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