mRNA_E-siliculosus-1a_F_contig137.2208.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig137.2208.1
Unique NamemRNA_E-siliculosus-1a_F_contig137.2208.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: D7FWF9_ECTSI (Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.010e-18
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAYIYVLIEALA GGVRMGLPRAM I LA  TVKGAAEMVLETGEHPA+L+    + G
Sbjct:  233 SGPAYIYVLIEALADGGVRMGLPRAMAIRLAAQTVKGAAEMVLETGEHPAVLKDNVCSPG 292
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: A0A6H5JW87_9PHAE (Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW87_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.580e-18
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAYIYVLIEALA GGVRMGLPRAM I LA  TVKGAAEMVLETGEHPA+L+    + G
Sbjct:  272 SGPAYIYVLIEALADGGVRMGLPRAMAIKLAAQTVKGAAEMVLETGEHPAVLKDNVCSPG 331
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: A0A3M1S937_9BACT (Pyrroline-5-carboxylate reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1S937_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.270e-15
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPA++YV+IEALA  GVR+GLPRA+ + LA  TVKGAAEMVLETGEHP  L+   A+ G
Sbjct:  174 SGPAFVYVMIEALADAGVRVGLPRAVALTLAAQTVKGAAEMVLETGEHPGALKDAVASPG 233
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: D7G6J4_ECTSI (Pyrroline-5-carboxylate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6J4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.680e-15
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAYI+VLIEALA GGVRMGLPRA  + LA  TVKGAA MVLETG HP +L+    + G
Sbjct:  182 SGPAYIFVLIEALADGGVRMGLPRATALKLAAQTVKGAATMVLETGTHPGVLKDNVCSPG 241
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: A0A7V3JLT5_9BACT (Pyrroline-5-carboxylate reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JLT5_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 6.200e-15
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPA++YV+IEAL+ GGVRMGLPR +   LA  TV+GAAEMVL TGEHPA+L+   A+ G
Sbjct:  177 SGPAFVYVMIEALSDGGVRMGLPRPVAAALAAQTVRGAAEMVLATGEHPAVLKERVASPG 236
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: Q1K207_DESA6 (Pyrroline-5-carboxylate reductase n=1 Tax=Desulfuromonas acetoxidans (strain DSM 684 / 11070) TaxID=281689 RepID=Q1K207_DESA6)

HSP 1 Score: 82.8 bits (203), Expect = 8.170e-15
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILR-RTCAARGS 321
            SGPAY+Y +IEALA GGV  GLPR + +NLA  TV GAA+MVL+TGEHPA+LR R C+  G+
Sbjct:  174 SGPAYVYTIIEALADGGVLEGLPRDVALNLAAKTVAGAAQMVLDTGEHPAVLRDRVCSPGGT 235
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: C0GHT1_9FIRM (Pyrroline-5-carboxylate reductase n=1 Tax=Dethiobacter alkaliphilus AHT 1 TaxID=555088 RepID=C0GHT1_9FIRM)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-14
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAY+Y++IEALA GGV  GLPRAM + LA  TV GAA MV+ETGEHPA+LR    + G
Sbjct:  173 SGPAYVYLMIEALADGGVLNGLPRAMALELAAQTVLGAARMVMETGEHPAVLREMVTSPG 232
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: A0A7C4ITQ8_9BACT (Pyrroline-5-carboxylate reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4ITQ8_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.480e-14
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAY+YVLIEAL+ GGVRMGLPR++ + LA  TV GAA+MVL T EHPA+L+   A+ G
Sbjct:  172 SGPAYVYVLIEALSDGGVRMGLPRSIALTLAAQTVLGAAQMVLHTKEHPAVLKDRVASPG 231
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: UPI0019871997 (Pyrroline-5-carboxylate reductase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=UPI0019871997)

HSP 1 Score: 81.6 bits (200), Expect = 2.100e-14
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILR 297
            SGPAY+Y++IEALA GGVR GLPRA  + LA  TV GAAEMV++TGEHPA+L+
Sbjct:  172 SGPAYVYLIIEALADGGVRAGLPRADAMRLAAQTVSGAAEMVIQTGEHPAVLK 224
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BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Match: A0A518I688_9PLAN (Pyrroline-5-carboxylate reductase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I688_9PLAN)

HSP 1 Score: 81.6 bits (200), Expect = 2.320e-14
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:  139 SGPAYIYVLIEALASGGVRMGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARG 318
            SGPAYIY +IEAL+ GGVRMGLPR +   LA  TVKGAAEMVLETGEHP  L+    + G
Sbjct:  178 SGPAYIYQIIEALSDGGVRMGLPRHIATQLAAQTVKGAAEMVLETGEHPGALKDAVTSPG 237
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig137.2208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF9_ECTSI1.010e-1878.33Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarp... [more]
A0A6H5JW87_9PHAE1.580e-1878.33Pyrroline-5-carboxylate reductase n=1 Tax=Ectocarp... [more]
A0A3M1S937_9BACT2.270e-1566.67Pyrroline-5-carboxylate reductase n=1 Tax=Planctom... [more]
D7G6J4_ECTSI3.680e-1568.33Pyrroline-5-carboxylate reductase n=2 Tax=Ectocarp... [more]
A0A7V3JLT5_9BACT6.200e-1565.00Pyrroline-5-carboxylate reductase n=1 Tax=Planctom... [more]
Q1K207_DESA68.170e-1564.52Pyrroline-5-carboxylate reductase n=1 Tax=Desulfur... [more]
C0GHT1_9FIRM1.110e-1465.00Pyrroline-5-carboxylate reductase n=1 Tax=Dethioba... [more]
A0A7C4ITQ8_9BACT1.480e-1465.00Pyrroline-5-carboxylate reductase n=1 Tax=Planctom... [more]
UPI00198719972.100e-1469.81Pyrroline-5-carboxylate reductase n=1 Tax=Armatimo... [more]
A0A518I688_9PLAN2.320e-1466.67Pyrroline-5-carboxylate reductase n=2 Tax=Gimesia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig137contigE-siliculosus-1a_F_contig137:14564..16420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size129
Model size887
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EC1.5.1.2
Ec32 orthologEc-07_007340.1
Ec32 ortholog descriptiondelta-1-pyrroline-5-carboxylate reductase, partial
EggNOG OGsCOG0345@1,KOG3124@2759
EggNOG free text desc.pyrroline-5-carboxylate reductase activity
KEGG ModuleM00015
KEGG Pathwayko00330,ko01100,ko01110,ko01130,ko01230,map00330,map01100,map01110,map01130,map01230
KEGG ReactionR01248,R01251,R03291,R03293
KEGG koko:K00286
KEGG rclassRC00054,RC00083
Preferred nameP5CR
Seed eggNOG ortholog2880.D7FWF9
Seed ortholog evalue2.3e-07
Seed ortholog score60.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig137.2208.1prot_E-siliculosus-1a_F_contig137.2208.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig137 15127..16225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.5212727-UTR-E-siliculosus-1a_F_contig137:14563..151261622927885.5212727-UTR-E-siliculosus-1a_F_contig137:14563..15126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 14564..15126 -
1696318722.4971719-UTR-E-siliculosus-1a_F_contig137:14563..151261696318722.4971719-UTR-E-siliculosus-1a_F_contig137:14563..15126Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 14564..15126 -
1622927885.57602-UTR-E-siliculosus-1a_F_contig137:16225..164201622927885.57602-UTR-E-siliculosus-1a_F_contig137:16225..16420Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 16226..16420 -
1696318722.5272982-UTR-E-siliculosus-1a_F_contig137:16225..164201696318722.5272982-UTR-E-siliculosus-1a_F_contig137:16225..16420Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig137 16226..16420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.5421886-CDS-E-siliculosus-1a_F_contig137:15126..151641622927885.5421886-CDS-E-siliculosus-1a_F_contig137:15126..15164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 15127..15164 -
1696318722.5096369-CDS-E-siliculosus-1a_F_contig137:15126..151641696318722.5096369-CDS-E-siliculosus-1a_F_contig137:15126..15164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 15127..15164 -
1622927885.561449-CDS-E-siliculosus-1a_F_contig137:16134..162251622927885.561449-CDS-E-siliculosus-1a_F_contig137:16134..16225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 16135..16225 -
1696318722.518774-CDS-E-siliculosus-1a_F_contig137:16134..162251696318722.518774-CDS-E-siliculosus-1a_F_contig137:16134..16225Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig137 16135..16225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig137.2208.1

>prot_E-siliculosus-1a_F_contig137.2208.1 ID=prot_E-siliculosus-1a_F_contig137.2208.1|Name=mRNA_E-siliculosus-1a_F_contig137.2208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
MGLPRAMTINLAVPTVKGAAEMVLETGEHPAILRRTCAARGS*
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mRNA from alignment at E-siliculosus-1a_F_contig137:14564..16420-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig137.2208.1 ID=mRNA_E-siliculosus-1a_F_contig137.2208.1|Name=mRNA_E-siliculosus-1a_F_contig137.2208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1857bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:14564..16420- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCACCTTTCCATCTGCTGTGCCCCCCGCCTCTCTCGAGGGCACGTGGT
CAATGGCCTAACGGCTAGGGCATGCAAAGCTTGAGTACCTCTATCTCTCT
TCCCTCTGCGGTTCACCTGACGGGTGTTCGAGGTATGTAGCGGGCCGGCG
TACATCTACGTCCTGATCGAGGCACTGGCGTCCGGTGGCGTCCGGATGGG
CTTGCCGAGAGCGATGACGATCAATCTCGCGGTGCCGACGGTCAAGGGTG
CCGCGGAGATGGTTCTGGAGACGGGAGAACACCCAGGTGGGTCAAACATA
GTCGGTTATCTTGACTCTTGGGACTGCAGTATGGAACGCTTGCCTGTTTC
GTCGTCGGTTTTGAAAAGTGTGTTCCTTCGCGCATACGAGCAACGATGCT
GATGGCACGTGGTTTGTAGCGCAGGTGTTTTAGTCATGTTCGTAGCCCGA
GGGTATATTTTTTCCGTTGTGTTGTTCCCATGACCCCTCCCTGTTGAGGT
CATGTCTTCGGATGCCTTTCTCTCGCGGTGCTGGCGTGGTATTTCGCTAT
GGTTTTGTGGGTCTCGACCAATGGTCTTATCCCTTATATTGTTTGACGGA
GATTACCGTTGGACCACTCTATCAGAGCAATGGCATCTATGGCCCAACCC
CCACGAAAAGTTTCTTACGGGCTATCGACGTTTCAGCCGATGATGTTTGT
AAGGGCTACCAACATGCTGTCAACTCAATCCGCTTTCTTTACCGCTAGCC
CCTTCGGTTAGCGTGCCATCTTGAAACTCTATTCCATTGGATTGCGCGCC
TGAGGTTCGTCCGCTGTCCGTCTGTTTGGTTGTTGTTGATGCCGGGATGT
CCGGCGGCGTGCTTGGCGTGTCCATTTTTCACATGCCTTTTCCCCTCTTC
AACGGTGGCTCCTTATGCGATATGAATGTGCTGTGCTTGTCGGAGCTTGC
GCTTTCACTTCCAAACCGCGGCCCCTGTAGAAGCAGTGGGTACCTCAATG
ATTCTGCGCACGAGGGATATCTCGTTGATGATCCCTCTCCGCCGGTGGCT
ACGTTGTGATGAATCGCCTTCGATCTCCTTTCCGCTGGATTCATTCGTCG
ATCGATGCCGTCAAACATACGCCCTTGATGTGTGTTCCGTCGCTTCTTCT
ACACCTTTTTTGCGTATGTCGTGACAGTGAAGCTGTTCTGAAGGACAATC
GTTGTGTGTTCCGTCTCTTCTTCTACCCCTCTGCTTCTTGTGTCGTGATT
GTGAAGCTATTCTAAGGAGAACGTGTGCAGCCCGGGGGAGCTGATAATCG
CGGCCATCGAGTCTCTCAAGAAGAATGTTTTTCGGTCCGCGGCGGTGGAG
GCCGAGATCGCGGTCGCGTCCAAGTCGATGGAGATGCGCAACGCCGAGGA
AGAGAAATGAATGAAATAGAAGAAGTGACAGCAGTTCTTCGAAGCGTGTT
ATTCTGCAACATGAGACTATGAAACGGTTTTGAGGGAGGCACAGATATTG
CACGGGACGAAGAAGCAGAAAAGCAGACGGACGTGAGGAGGGTGGTGGGA
AGGATTGGCGGGGTAGTCATTAATAATGGAGTGGAACCAGGATGTTGACA
CCTTCGTCGTAGGCATGAAGACAGTGACGGCCTCGACCGTTGTATGGATC
GTCATTGGTTTCTCTTGAAAATTGCGCCATTGACTTTCGTGTAGGGTAGT
ATGTTTCGCGTGTTTCCAGTTTGATGAGGGCGTCAGTTGTTCACGTAGTA
GCAATAGCAGATCGAAGAGTTCCTTGAACAGCGCATCTGTACCCTCGACA
CACACAATGTAGTAAAAGCCAGAGTGGTGATTTTTGCCCCGCTTGTTTGT
TGCTGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig137:14564..16420-

>mRNA_E-siliculosus-1a_F_contig137.2208.1 ID=mRNA_E-siliculosus-1a_F_contig137.2208.1|Name=mRNA_E-siliculosus-1a_F_contig137.2208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig137:14564..16420- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCTTGCCGAGAGCGATGACGATCAATCTCGCGGTGCCGACGGTCAA
GGGTGCCGCGGAGATGGTTCTGGAGACGGGAGAACACCCAGATGGGCTTG
CCGAGAGCGATGACGATCAATCTCGCGGTGCCGACGGTCAAGGGTGCCGC
GGAGATGGTTCTGGAGACGGGAGAACACCCAGCTATTCTAAGGAGAACGT
GTGCAGCCCGGGGGAGCTGACTATTCTAAGGAGAACGTGTGCAGCCCGGG
GGAGCTGA
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