mRNA_E-siliculosus-1a_F_contig13697.2204.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13697.2204.1
Unique NamemRNA_E-siliculosus-1a_F_contig13697.2204.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A0D5M3M3_9GAMM (Dihydroorotase n=31 Tax=root TaxID=1 RepID=A0A0D5M3M3_9GAMM)

HSP 1 Score: 422 bits (1084), Expect = 7.980e-147
Identity = 209/229 (91.27%), Postives = 217/229 (94.76%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            DLAHCDATIA MV+VGMPLLVHGEVT AEIDIFDREAVFIEK+MKPLL RHPTLKVVFEHITTQQAAEFVAQAPD+VAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYA AFDEMNALDKLE FASLNGPRFYGL PN D++TLER+EWRLPESY YAQG  IIPLLA E+L WA+
Sbjct:  115 DLAHCDATIAKMVEVGMPLLVHGEVTTAEIDIFDREAVFIEKVMKPLLARHPTLKVVFEHITTQQAAEFVAQAPDSVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYATAFDEMNALDKLEAFASLNGPRFYGLTPNADTMTLERREWRLPESYSYAQGESIIPLLAGESLGWAI 343
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: L9UCJ6_9GAMM (Dihydroorotase n=7 Tax=Halomonas TaxID=2745 RepID=L9UCJ6_9GAMM)

HSP 1 Score: 412 bits (1060), Expect = 1.080e-142
Identity = 205/231 (88.74%), Postives = 214/231 (92.64%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAMTS 693
            DLAHCDATI MM KVGMPLLVHGEVT AEIDIFDREAVFIE ++KPLL+RHP L+VV EHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYA AFDEM ALDKLE FASLNGPRFYGL+ N D+ITLER+ W LPESYPYAQG  IIPLLA ETL+WA+ S
Sbjct:  147 DLAHCDATIEMMAKVGMPLLVHGEVTHAEIDIFDREAVFIETVLKPLLERHPALRVVCEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYATAFDEMGALDKLEAFASLNGPRFYGLSANADTITLERRGWTLPESYPYAQGENIIPLLAGETLNWAVRS 377
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A2T0V6G0_9GAMM (Dihydroorotase n=14 Tax=Halomonas TaxID=2745 RepID=A0A2T0V6G0_9GAMM)

HSP 1 Score: 409 bits (1051), Expect = 2.360e-141
Identity = 201/229 (87.77%), Postives = 212/229 (92.58%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            DLAHCD TIAM+ KVGMPLLVHGEVT A+IDIFDREAVFIE++MKPLL RHP LKVVFEHITTQQAAEFVAQAPDN+AATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH+QG KESSCGCAGAYTAPAAIELYA AFDEM ALDKLE FASLNGPRFYGL PNPDSITLERK W+LP+SYPYA G  IIPLLA E+L W++
Sbjct:  145 DLAHCDDTIAMLAKVGMPLLVHGEVTTADIDIFDREAVFIERVMKPLLARHPALKVVFEHITTQQAAEFVAQAPDNIAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSAKFFLGTDSAPHAQGDKESSCGCAGAYTAPAAIELYARAFDEMGALDKLEAFASLNGPRFYGLDPNPDSITLERKSWQLPDSYPYANGKSIIPLLAGESLEWSI 373
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A0D7UW00_9GAMM (Dihydroorotase n=31 Tax=Halomonadaceae TaxID=28256 RepID=A0A0D7UW00_9GAMM)

HSP 1 Score: 403 bits (1035), Expect = 2.270e-139
Identity = 197/229 (86.03%), Postives = 211/229 (92.14%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            D+AHCDATIAMM K+GMPLLVHGEVTD EIDIFDREA+FIE++MKPLL RHP+LKVVFEHITTQQAAEFVA A DNVAATITAHHLLFNRNKML GGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH++G KESSCGCAGAYTAPAAIELYA AF+EM ALDKLE FASLNGPRFYGLAPN D++TLER++W LPESYPYA G  I+PLLA ETL WAM
Sbjct:  115 DIAHCDATIAMMAKLGMPLLVHGEVTDHEIDIFDREAMFIERVMKPLLARHPSLKVVFEHITTQQAAEFVASASDNVAATITAHHLLFNRNKMLAGGIRPHYYCLPILKREQHRQALLKAATSGSPKFFLGTDSAPHAKGDKESSCGCAGAYTAPAAIELYATAFEEMQALDKLEAFASLNGPRFYGLAPNTDTVTLERRQWVLPESYPYASGQTIVPLLAGETLQWAM 343
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: H0IXV7_9GAMM (Dihydroorotase n=2 Tax=Halomonas TaxID=2745 RepID=H0IXV7_9GAMM)

HSP 1 Score: 395 bits (1015), Expect = 2.590e-136
Identity = 192/229 (83.84%), Postives = 208/229 (90.83%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            D+AHCD  IAMM K+GMPLLVHGEVTD++IDIFDREA FIE++MKPLL RHP+LKVVFEHITTQQAAEFVA AP N+AATITAHHLLFNRNKML GGIRPHYYCLPILKREQHR ALLKAATSGS KFFLGTDSAPH+QG KESSCGCAGAYTAPAAIELYA AF+EM ALDKLE FASLNGPRFYGL+PN D+ITLER+EWRLPE +PYA G  IIPL+A ETL WA+
Sbjct:  115 DIAHCDEAIAMMAKLGMPLLVHGEVTDSDIDIFDREAAFIERVMKPLLARHPSLKVVFEHITTQQAAEFVAAAPGNIAATITAHHLLFNRNKMLAGGIRPHYYCLPILKREQHRLALLKAATSGSAKFFLGTDSAPHAQGDKESSCGCAGAYTAPAAIELYAVAFEEMQALDKLEAFASLNGPRFYGLSPNTDTITLERREWRLPERFPYAAGQDIIPLMAGETLPWAL 343
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A1U9R8E9_9GAMM (Dihydroorotase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R8E9_9GAMM)

HSP 1 Score: 391 bits (1005), Expect = 8.310e-135
Identity = 192/229 (83.84%), Postives = 204/229 (89.08%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            D+AHCD  IA M KVGMPLLVHGEVTD++IDIFDREA FIE++MKPLL  HP LKVVFEHITTQQAAEFVA A DN+AATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH+QG KESSCGCAGAYTAP AIELYA AF+EM ALDKLE FASLNGPRFYGL PN  S+TLER+EWRLPESYPY +G  IIPLLA E L WA+
Sbjct:  115 DIAHCDEAIATMAKVGMPLLVHGEVTDSDIDIFDREAEFIERVMKPLLANHPDLKVVFEHITTQQAAEFVAAASDNIAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSPKFFLGTDSAPHAQGDKESSCGCAGAYTAPVAIELYAMAFEEMQALDKLEAFASLNGPRFYGLPPNTGSVTLERREWRLPESYPYTEGQDIIPLLAGEILPWAL 343
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A060BFT4_9GAMM (Dihydroorotase n=18 Tax=Halomonadaceae TaxID=28256 RepID=A0A060BFT4_9GAMM)

HSP 1 Score: 390 bits (1002), Expect = 2.380e-134
Identity = 191/229 (83.41%), Postives = 204/229 (89.08%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            D+AHCD TIAM+  VGMPLLVHGEVTD EIDIFDREAVFIE++MKPLL RHP LKVVFEHITTQQAAEFVA APDN+AATITAHHLLFNRNKML GGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH+QG KESSCGCAGAYTAPAAIELYAAAF+EM ALDKLE FASLNGPRFYGL  N DS+TLER+ W LP  YPY  G  IIPL+A E+L+W +
Sbjct:  115 DIAHCDDTIAMLANVGMPLLVHGEVTDHEIDIFDREAVFIEQVMKPLLARHPNLKVVFEHITTQQAAEFVAAAPDNIAATITAHHLLFNRNKMLAGGIRPHYYCLPILKREQHRQALLKAATSGSPKFFLGTDSAPHAQGDKESSCGCAGAYTAPAAIELYAAAFEEMGALDKLEAFASLNGPRFYGLPANADSVTLERRSWSLPAHYPYTAGQHIIPLMAGESLAWKL 343
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A1G9YK09_9GAMM (Dihydroorotase n=6 Tax=Halomonas TaxID=2745 RepID=A0A1G9YK09_9GAMM)

HSP 1 Score: 378 bits (970), Expect = 1.680e-129
Identity = 188/230 (81.74%), Postives = 202/230 (87.83%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAMT 690
            DL+HCD TIA + + GMPLL+HGEVTD EIDIFDREAVFIE+++ PLL RHPTLKVVFEHITTQQAAEFVAQAPD VAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH+Q AKESSCGCAGAYTA  AIELYA AF+E  AL  LEGFASLNGPRFYGL PN DSITL R+   +P SYPYAQG  IIPLLA ETL W+++
Sbjct:  115 DLSHCDDTIAALAEAGMPLLMHGEVTDNEIDIFDREAVFIERVLTPLLARHPTLKVVFEHITTQQAAEFVAQAPDTVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSGKFFLGTDSAPHAQSAKESSCGCAGAYTASTAIELYATAFEEAGALAALEGFASLNGPRFYGLPPNRDSITLSRRSQSIPASYPYAQGEAIIPLLAGETLGWSIS 344
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A0P8AUE5_9GAMM (Dihydroorotase n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A0P8AUE5_9GAMM)

HSP 1 Score: 377 bits (969), Expect = 2.390e-129
Identity = 187/230 (81.30%), Postives = 204/230 (88.70%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAMT 690
            DL HCDATIA + + GMPLL+HGEVTD++IDIFDREAVFIE+++ PLL RHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGS KFFLGTDSAPH+Q AKESSCGCAGAYTAPAAIELYA AF+E  AL  LEGFASLNGPRFYGL  N ++ITL R+   LP  YPYA G  IIPLLA ETL+W+++
Sbjct:  115 DLKHCDATIAALAEAGMPLLMHGEVTDSDIDIFDREAVFIERVLTPLLARHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSGKFFLGTDSAPHAQSAKESSCGCAGAYTAPAAIELYATAFEEAGALAALEGFASLNGPRFYGLPANTETITLVRRPQTLPAGYPYAGGESIIPLLAGETLAWSLS 344
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Match: A0A7Y3XBZ1_9GAMM (Dihydroorotase n=2 Tax=Halomonas azerica TaxID=2732867 RepID=A0A7Y3XBZ1_9GAMM)

HSP 1 Score: 377 bits (969), Expect = 2.740e-129
Identity = 183/229 (79.91%), Postives = 204/229 (89.08%), Query Frame = 1 
Query:    1 DLAHCDATIAMMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEHITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKREQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIELYAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPYAQGAQIIPLLARETLSWAM 687
            DL +CD TIA M + G+PLL+HGEVTDA+IDIFDREAVFIE+++KPLL RHP+LKVV EHITT+QAA FVA+APDNVAATITAHHLLFNRN MLVGGIRPHYYCLPILKRE+HRQALLKAATSGS KFFLGTDSAPH+QG KESSCGCAGAYTAPAAIELYA AF++M+ALD+LE FASLNGPRFYGL  NPD + LER  W LP+SYPYA G +IIPLLA ETL W +
Sbjct:  115 DLRYCDETIAAMAEAGLPLLMHGEVTDADIDIFDREAVFIEQVLKPLLARHPSLKVVCEHITTEQAATFVAEAPDNVAATITAHHLLFNRNHMLVGGIRPHYYCLPILKRERHRQALLKAATSGSRKFFLGTDSAPHAQGDKESSCGCAGAYTAPAAIELYAMAFEQMDALDQLEAFASLNGPRFYGLPVNPDKVVLERNSWALPDSYPYADGQRIIPLLAGETLPWKL 343
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13697.2204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D5M3M3_9GAMM7.980e-14791.27Dihydroorotase n=31 Tax=root TaxID=1 RepID=A0A0D5M... [more]
L9UCJ6_9GAMM1.080e-14288.74Dihydroorotase n=7 Tax=Halomonas TaxID=2745 RepID=... [more]
A0A2T0V6G0_9GAMM2.360e-14187.77Dihydroorotase n=14 Tax=Halomonas TaxID=2745 RepID... [more]
A0A0D7UW00_9GAMM2.270e-13986.03Dihydroorotase n=31 Tax=Halomonadaceae TaxID=28256... [more]
H0IXV7_9GAMM2.590e-13683.84Dihydroorotase n=2 Tax=Halomonas TaxID=2745 RepID=... [more]
A0A1U9R8E9_9GAMM8.310e-13583.84Dihydroorotase n=2 Tax=Halomonas TaxID=2745 RepID=... [more]
A0A060BFT4_9GAMM2.380e-13483.41Dihydroorotase n=18 Tax=Halomonadaceae TaxID=28256... [more]
A0A1G9YK09_9GAMM1.680e-12981.74Dihydroorotase n=6 Tax=Halomonas TaxID=2745 RepID=... [more]
A0A0P8AUE5_9GAMM2.390e-12981.30Dihydroorotase n=2 Tax=unclassified Halomonas TaxI... [more]
A0A7Y3XBZ1_9GAMM2.740e-12979.91Dihydroorotase n=2 Tax=Halomonas azerica TaxID=273... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13697contigE-siliculosus-1a_F_contig13697:555..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size666
Model size696
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.F
EC3.5.2.3
EggNOG OGs1MUYP@1224,1RNEN@1236,1XII3@135619,COG0418@1,COG0418@2
EggNOG free text desc.Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate
GOsGO:0003674,GO:0003824,GO:0004151,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009117,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009987,GO:0016787,GO:0016810,GO:0016812,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046390,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
KEGG ModuleM00051
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ReactionR01993
KEGG koko:K01465
KEGG rclassRC00632
Preferred namepyrC
Seed eggNOG ortholog1504981.KO116_2507
Seed ortholog evalue1.6e-109
Seed ortholog score402.1
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.305219-CDS-E-siliculosus-1a_F_contig13697:554..12201622927885.305219-CDS-E-siliculosus-1a_F_contig13697:554..1220Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13697 555..1220 -
1696318722.410833-CDS-E-siliculosus-1a_F_contig13697:554..12201696318722.410833-CDS-E-siliculosus-1a_F_contig13697:554..1220Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13697 555..1220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927885.3285053-UTR-E-siliculosus-1a_F_contig13697:1220..12501622927885.3285053-UTR-E-siliculosus-1a_F_contig13697:1220..1250Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13697 1221..1250 -
1696318722.428565-UTR-E-siliculosus-1a_F_contig13697:1220..12501696318722.428565-UTR-E-siliculosus-1a_F_contig13697:1220..1250Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig13697 1221..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13697.2204.1prot_E-siliculosus-1a_F_contig13697.2204.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13697 555..1220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13697.2204.1

>prot_E-siliculosus-1a_F_contig13697.2204.1 ID=prot_E-siliculosus-1a_F_contig13697.2204.1|Name=mRNA_E-siliculosus-1a_F_contig13697.2204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=222bp
MMVKVGMPLLVHGEVTDAEIDIFDREAVFIEKIMKPLLKRHPTLKVVFEH
ITTQQAAEFVAQAPDNVAATITAHHLLFNRNKMLVGGIRPHYYCLPILKR
EQHRQALLKAATSGSHKFFLGTDSAPHSQGAKESSCGCAGAYTAPAAIEL
YAAAFDEMNALDKLEGFASLNGPRFYGLAPNPDSITLERKEWRLPESYPY
AQGAQIIPLLARETLSWAMTS*
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mRNA from alignment at E-siliculosus-1a_F_contig13697:555..1250-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13697.2204.1 ID=mRNA_E-siliculosus-1a_F_contig13697.2204.1|Name=mRNA_E-siliculosus-1a_F_contig13697.2204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13697:555..1250- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATTTGGCTCACTGTGATGCGACGATTGCAATGATGGTCAAAGTGGGTAT
GCCGCTGTTGGTACATGGCGAAGTCACTGATGCAGAGATCGATATTTTTG
ACCGCGAAGCAGTGTTTATTGAAAAGATAATGAAACCCCTGCTGAAGCGC
CACCCAACGTTAAAAGTAGTGTTTGAGCACATTACTACTCAGCAGGCGGC
TGAGTTCGTAGCCCAGGCCCCGGACAATGTAGCTGCCACTATTACTGCCC
ACCACCTACTGTTTAACCGTAACAAAATGCTAGTGGGTGGCATTCGTCCT
CACTACTACTGCCTGCCCATTTTGAAACGTGAACAGCATCGTCAGGCGCT
TTTGAAAGCCGCCACTAGCGGCAGTCACAAGTTCTTTTTGGGTACTGACA
GTGCGCCTCACTCCCAGGGGGCCAAAGAGTCAAGCTGCGGCTGTGCCGGT
GCGTACACTGCACCTGCTGCCATTGAACTGTACGCGGCCGCCTTCGATGA
AATGAATGCATTAGATAAATTGGAAGGATTTGCTAGTTTAAACGGGCCAC
GTTTTTATGGATTGGCACCTAACCCAGACAGTATCACACTAGAGCGAAAA
GAGTGGCGATTGCCGGAAAGCTACCCCTATGCTCAGGGTGCTCAGATTAT
TCCGTTGCTGGCGAGAGAAACGCTTAGTTGGGCGATGACCTCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13697:555..1250-

>mRNA_E-siliculosus-1a_F_contig13697.2204.1 ID=mRNA_E-siliculosus-1a_F_contig13697.2204.1|Name=mRNA_E-siliculosus-1a_F_contig13697.2204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13697:555..1250- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGTCAAAGTGGGTATGCCGCTGTTGGTACATGGCGAAGTCACTGA
TGCAGAGATCGATATTTTTGACCGCGAAGCAGTGTTTATTGAAAAGATAA
TGAAACCCCTGCTGAAGCGCCACCCAACGTTAAAAGTAGTGTTTGAGCAC
ATTACTACTCAGCAGGCGGCTGAGTTCGTAGCCCAGGCCCCGGACAATGT
AGCTGCCACTATTACTGCCCACCACCTACTGTTTAACCGTAACAAAATGC
TAGTGGGTGGCATTCGTCCTCACTACTACTGCCTGCCCATTTTGAAACGT
GAACAGCATCGTCAGGCGCTTTTGAAAGCCGCCACTAGCGGCAGTCACAA
GTTCTTTTTGGGTACTGACAGTGCGCCTCACTCCCAGGGGGCCAAAGAGT
CAAGCTGCGGCTGTGCCGGTGCGTACACTGCACCTGCTGCCATTGAACTG
TACGCGGCCGCCTTCGATGAAATGAATGCATTAGATAAATTGGAAGGATT
TGCTAGTTTAAACGGGCCACGTTTTTATGGATTGGCACCTAACCCAGACA
GTATCACACTAGAGCGAAAAGAGTGGCGATTGCCGGAAAGCTACCCCTAT
GCTCAGGGTGCTCAGATTATTCCGTTGCTGGCGAGAGAAACGCTTAGTTG
GGCGATGACCTCGTAGATGATGGTCAAAGTGGGTATGCCGCTGTTGGTAC
ATGGCGAAGTCACTGATGCAGAGATCGATATTTTTGACCGCGAAGCAGTG
TTTATTGAAAAGATAATGAAACCCCTGCTGAAGCGCCACCCAACGTTAAA
AGTAGTGTTTGAGCACATTACTACTCAGCAGGCGGCTGAGTTCGTAGCCC
AGGCCCCGGACAATGTAGCTGCCACTATTACTGCCCACCACCTACTGTTT
AACCGTAACAAAATGCTAGTGGGTGGCATTCGTCCTCACTACTACTGCCT
GCCCATTTTGAAACGTGAACAGCATCGTCAGGCGCTTTTGAAAGCCGCCA
CTAGCGGCAGTCACAAGTTCTTTTTGGGTACTGACAGTGCGCCTCACTCC
CAGGGGGCCAAAGAGTCAAGCTGCGGCTGTGCCGGTGCGTACACTGCACC
TGCTGCCATTGAACTGTACGCGGCCGCCTTCGATGAAATGAATGCATTAG
ATAAATTGGAAGGATTTGCTAGTTTAAACGGGCCACGTTTTTATGGATTG
GCACCTAACCCAGACAGTATCACACTAGAGCGAAAAGAGTGGCGATTGCC
GGAAAGCTACCCCTATGCTCAGGGTGCTCAGATTATTCCGTTGCTGGCGA
GAGAAACGCTTAGTTGGGCGATGACCTCGTAG
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