mRNA_E-siliculosus-1a_F_contig1369.2196.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1369.2196.1
Unique NamemRNA_E-siliculosus-1a_F_contig1369.2196.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1369contigE-siliculosus-1a_F_contig1369:1792..2323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size189
Model size532
Exons1
Ec32 orthologEc-07_003130.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1369.2196.1prot_E-siliculosus-1a_F_contig1369.2196.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1369 1894..2082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.5001945-UTR-E-siliculosus-1a_F_contig1369:1791..18931622927884.5001945-UTR-E-siliculosus-1a_F_contig1369:1791..1893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1369 1792..1893 +
1696318722.0486891-UTR-E-siliculosus-1a_F_contig1369:1791..18931696318722.0486891-UTR-E-siliculosus-1a_F_contig1369:1791..1893Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1369 1792..1893 +
1622927884.5364456-UTR-E-siliculosus-1a_F_contig1369:2082..23231622927884.5364456-UTR-E-siliculosus-1a_F_contig1369:2082..2323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1369 2083..2323 +
1696318722.068022-UTR-E-siliculosus-1a_F_contig1369:2082..23231696318722.068022-UTR-E-siliculosus-1a_F_contig1369:2082..2323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1369 2083..2323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927884.52056-CDS-E-siliculosus-1a_F_contig1369:1893..20821622927884.52056-CDS-E-siliculosus-1a_F_contig1369:1893..2082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1369 1894..2082 +
1696318722.0597887-CDS-E-siliculosus-1a_F_contig1369:1893..20821696318722.0597887-CDS-E-siliculosus-1a_F_contig1369:1893..2082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1369 1894..2082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1369.2196.1

>prot_E-siliculosus-1a_F_contig1369.2196.1 ID=prot_E-siliculosus-1a_F_contig1369.2196.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
MIGRGSGSDGVLIVGCGVAKSLLAGVVKSWCLPASCRVSCLAKPSFNLQS
VGAELFCLACDG*
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mRNA from alignment at E-siliculosus-1a_F_contig1369:1792..2323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1369.2196.1 ID=mRNA_E-siliculosus-1a_F_contig1369.2196.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1369:1792..2323+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTCTTGTTTTCCGACTGATTGCCTGCTGCCCGAAACCGCTGTTGTTTGT
TGTTGGTGTCTGGGTCGGGCCCGTCGGAGATGTCTGTTTTGCCCTGCTTC
ACATGATAGGAAGGGGCAGTGGAAGTGACGGTGTTTTGATTGTTGGGTGT
GGGGTGGCGAAAAGCCTCTTGGCCGGTGTTGTTAAGTCGTGGTGCCTGCC
TGCCTCTTGCCGGGTTAGCTGTCTAGCAAAGCCTTCATTCAATCTACAGT
CAGTAGGAGCAGAGCTTTTCTGTCTCGCATGTGATGGGTGAGAAGGGAGT
GCCTACCGTCGTATAGCTTACGCGTGTGGGAGCGCCACCTGCTGCGTCCT
TTTTTTCCCTGTGACGAGCGAGAGGGGTAACGATGACGTCGACGATGATG
CCTTTGTGGCCTCCGTCGACCGTGATTTTTCTGGTGATGATATCTGATGC
AGTTGTCTTATCGTAGCAGGGTGAGAGATAGTAGATTGTGCCGAACTACT
GTGGAAGCGGCCAATTTTCATTACCGCACGTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1369:1792..2323+

>mRNA_E-siliculosus-1a_F_contig1369.2196.1 ID=mRNA_E-siliculosus-1a_F_contig1369.2196.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1369:1792..2323+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAGGAAGGGGCAGTGGAAGTGACGGTGTTTTGATTGTTGGGTGTGG
GGTGGCGAAAAGCCTCTTGGCCGGTGTTGTTAAGTCGTGGTGCCTGCCTG
CCTCTTGCCGGGTTAGCTGTCTAGCAAAGCCTTCATTCAATCTACAGTCA
GTAGGAGCAGAGCTTTTCTGTCTCGCATGTGATGGGTGAATGATAGGAAG
GGGCAGTGGAAGTGACGGTGTTTTGATTGTTGGGTGTGGGGTGGCGAAAA
GCCTCTTGGCCGGTGTTGTTAAGTCGTGGTGCCTGCCTGCCTCTTGCCGG
GTTAGCTGTCTAGCAAAGCCTTCATTCAATCTACAGTCAGTAGGAGCAGA
GCTTTTCTGTCTCGCATGTGATGGGTGA
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