mRNA_E-siliculosus-1a_F_contig1365.2183.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2183.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 2556 bits (6625), Expect = 0.000e+0 Identity = 1781/2090 (85.22%), Postives = 1818/2090 (86.99%), Query Frame = 1
Query: 55 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTGSSSPSPAPGHDSAQWDGGLSSSMLASRPDDESGRPSSGDGVGGQPTFGN-SRPLVRESLPARAGMSGSFAEGDTSVLERTRHSDGRLSLRELRSADKSRTHYSDERARPRPDNTGDQSTTAVAAEAEGGGKMSGTGTQVSDQEGLFNKGVSSGSTHSGSTSRRRANDVGRPSSPGEAQRERALVTPVLTPDLGEKDDGRGPGSRGETPEVGLLRLRGDREPSVPTAASRIASAEPLLLLSPLIRSSRSGSVVGSGDAAWESFRREHSASGDNSSSSGDAGTAVAGTEDGMPATAAAA--AESGSLFELRDALRSREEDLLRLKRDVSIVATSARGFRHLSASLGSGNVERSSSFAFQRNRGHGKDASGASTDDSDLQSRNGSAFLGGGSDGSHAGGAGVDKINEEAFRPHHGGTVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLSDVSARLRRSERKRNAQAAELAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNDTTXXXXXXXXXXXXDDSLAETAQRLRKREAEVSRLRDRLETATGELLEEQGSNASLRARLEASDKETRRARERAAAAEEEAGAATXXXXXXXXXXXXXXXXXXVAAERARREAEASAELRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEAGRLHVRLSSLSATAEEIQASSSHRKLICRHTHSFLSVRRERDSAVAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEVRRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXAAENADASLXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAAQLDKDTLKRGLVASQTACAELRAERSRLLSELEHAATSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVRTRKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNXXXXXTRGKDDDYLFGLDGDRPHREGLQEALREACGVMERVASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRRRRGADANEQRSSLAAAPGSXXXXXXXXXRAFSVDSNRSGVGDADLRRDGFGDCAESGGEGDDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNSDVADPSDTATPATHSAAAPAPKHHHQPDPATQESHPGVIKETPSAAPADLAAAPEERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQEALEDTRDSLGVAGXXXXXXVGTQTTEGLDGPTREEVEYFEQQVVRMKAEAQALXXXXXXXXXXXXXXXXXXXKVQGLLGDKMSEAVALEAHVARLETERNEAREAASAAANDRLAEAEAALSDXXXXXXXXLATQRELRSRCAELSLASGAFASEVARQKEERARSQERARLATAELRDLSAKFSRASETAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLKAELDRQTKAARVQRQQGEREALEAES-------ERREKVERESKVLEARTGDLEAALASELKKAAETGAAHEREVAGLREEATRLRESLQADMERERGKWQEEQKAMREEMMLAREDDKASSIAEATEQGYEKGKAEEQQRTARSRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAALEKATGANRSSMSHLKAEMRSVITSLDQDKGGDVEIRPGGGVARRATVHYENARRQPAEV 6294
MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGT SSSP+PAPGHDSAQWDGGLSSSMLAS P DESGRPSSGDGVGGQPT GN SRPLVRE LPARAG+SG FAEGDTSVLERTR+SDGRLSLRELRSADKSRTHYSDERARPRPD+ GDQSTTAVAA AEGGG+M+GTGTQVSDQEGLFNKG SSGSTHSGSTSRRRANDVG PSSPG AQRE++LVTPVLTPD+GEKDDGRGPG+RGET VGLLRLRGDREPS+PTA SR ASAEPLLLLSPLIRSS S SV+GSGD AWESFRREHSASGDNSSSSGDAGTAVAGTEDGMPA AESG LFELRDALRSREEDLLRLKRDVS+VATSARGFRHLSASLGSGNVERSSSF+FQR+RGHGKDASGA+TDDSDL S NGSAF GGGSDGS AGGAGVDKINEEAFRPHHGG VGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSL+DVSARLRRSERKRNAQAAELA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX D T XXXXXXXXX SLAETAQR RLRDRLETATGE ASDKETRRARERAAAAEEEAGAAT XXXXXXXXXXXXXXXX AERA+REAEASAEL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XAEAEAGRLH SVRRERDS+VAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASE RRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXX NADASL XXXX AARAAQLDKDT LSELEHAATSAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVR RKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRN TRGKDDDYLFGLDGDRPHREGLQEALRE+CGVMER+ASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRR XXXXXXXXXRAFSVDSNRSGVGDADLR+DGFGDCAESGGEG DLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQN+ VADP+DTATP TH AAAPAPKHHHQPD AT+ESHPG ETPSAAPADLAA ERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQ ALEDTRDSLGVAG VGTQT EGLDGPTR EVE EQQVVRMKAE QA K+QGLL DKMSEAV LEAHVARLETERNEAREAASAAAND LAEAEA+LSD LATQRELRSRCAELSLASGAFASEVA+QKEERARSQERARLATAELRDLSAKFSRAS+TAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRL+AEL RQTKAARVQRQQGEREALE ES ERREKVERE KVLEARTGDLEAALA+ELKKAAETGA HEREVAGLREEATRLRESLQA+MERERGKWQ EQKAM EE+MLAREDDKAS IA+ATEQGYEKGKAEE RTARSRER XXXXXXXXXXXXXXXXXXXXXXXXX LEAALEKATGA+RSSMSHLKAEMRSVITSLDQDKGGDVEIRPGGGVARRATVHYE+ARR PAE
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSSSPAPAPGHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQPTLGNNSRPLVRELLPARAGVSGIFAEGDTSVLERTRYSDGRLSLRELRSADKSRTHYSDERARPRPDDAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSGSTHSGSTSRRRANDVGGPSSPGGAQREQSLVTPVLTPDVGEKDDGRGPGARGETQAVGLLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFRREHSASGDNSSSSGDAGTAVAGTEDGMPAAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSSSFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVGGVLLRRQPADSALPGTALSFRTAATPGRPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKS-KDATAARXXXXXXXXXXGSLAETAQRXXXXXXXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATAXXXXXXXXXXXXXXXX---AERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLH-------------------------------SVRRERDSSVAEVANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARAKXXXXR-AARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQRLKRKLQAVSDREDGGTPAGLGVGFSARTKRRNGGGG-TRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDSNRSGVGDADLRQDGFGDCAESGGEGHDLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRKEGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNNAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAAT-VGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLAEAEASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLATAELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTKAARVQRQQGEREALEVESGRKERETERREKVERECKVLEARTGDLEAALAAELKKAAETGAVHEREVAGLREEATRLRESLQAEMERERGKWQAEQKAMXEEIMLAREDDKASWIAKATEQGYEKGKAEEHHRTARSREREQRDLAALRKELSESTXXXXXXXXXXXXXXXXXXXXXXXXXQLEAALEKATGADRSSMSHLKAEMRSVITSLDQDKGGDVEIRPGGGVARRATVHYESARRHPAET 2052 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1365.2183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1365.2183.1 >prot_E-siliculosus-1a_F_contig1365.2183.1 ID=prot_E-siliculosus-1a_F_contig1365.2183.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=2315bp MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTGback to top mRNA from alignment at E-siliculosus-1a_F_contig1365:20114..33455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1365.2183.1 ID=mRNA_E-siliculosus-1a_F_contig1365.2183.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1365:20114..33455+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1365:20114..33455+ >mRNA_E-siliculosus-1a_F_contig1365.2183.1 ID=mRNA_E-siliculosus-1a_F_contig1365.2183.1|Name=mRNA_E-siliculosus-1a_F_contig1365.2183.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=13890bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1365:20114..33455+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |