mRNA_E-siliculosus-1a_F_contig13644.2178.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 256 bits (654), Expect = 4.810e-85 Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 3
Query: 3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
VCSY+GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALD+AFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANL+GSDFMACSKNDLRRAYK+LYPTGRG+DLLVK+CD R
Sbjct: 82 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNR 201
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 256 bits (654), Expect = 3.990e-84 Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 3
Query: 3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
VCSY+GEEFPGDSEGPVHCHGFVWPENASDDFIKYLALD+AFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANL+GSDFMACSKNDLRRAYK+LYPTGRG+DLLVK+CD R
Sbjct: 146 VCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDNR 265
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 158 bits (400), Expect = 1.790e-47 Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 3
Query: 3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLY 314
V Y EFPG+SEG VHCHG VWPE +SD++I YLALD+A+ +HV+EK Y G+IPGAPVC CLE MPEVSR+DC+QYR A+L GSDFMAC KNDLR ++ ++
Sbjct: 19 VYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLRPIWRPIH 122
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 134 bits (336), Expect = 1.260e-33 Identity = 61/112 (54.46%), Postives = 75/112 (66.96%), Query Frame = 3
Query: 24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
E+PG+SEG VHCHGFVWPE+A+D +I LA + +H D + Y GNI GAP+C C+EEMP+VS ADCT Y F AC+KNDLR Y++ YP G D LV ECD
Sbjct: 330 EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGE-LDNLVGECDN 440
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.350e-33 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 3
Query: 24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
E+PG+SEG VHCHGFVWPE+A+D +I LA + +H D + Y GNI GAP+C C+EEMP+VS ADCT Y F AC+ NDLR Y++ YP G D LV ECD
Sbjct: 373 EYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGE-LDNLVGECDN 483
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 130 bits (327), Expect = 4.230e-33 Identity = 61/112 (54.46%), Postives = 73/112 (65.18%), Query Frame = 3
Query: 24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDT 359
EFPGDSEG VHCHGFVWPE+A+D +I L+ + +H D + Y GNI GAP+C C+EEMP VS ADCT Y F AC+KNDLR Y+ YPTG +L V CD
Sbjct: 359 EFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANL-VDTCDN 469
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 127 bits (319), Expect = 2.970e-32 Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 3
Query: 24 EFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLYPTGRGQDLLVKECDTR 362
E+PGDSEG VHCHG VWPE+A+D +I LA + +H+ K Y GNI GAP+C C E+MPEVS+ADCT Y C NDLR Y LYP G D LV CD +
Sbjct: 307 EYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDG-DLDNLVGRCDNQ 418
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: A0A6H5JSN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN0_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 2.550e-22 Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 3
Query: 3 VCSYKGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFINHVDEKAYTGN--IPGAPVCHC 191
VC Y+ EFPG+SEG VHCHG+VWPE +SDD+I+YLALD+A+INHV+EK Y G P V C
Sbjct: 19 VCRYESTEFPGESEGDVHCHGWVWPEGSSDDYIEYLALDVAYINHVEEKGYFGQRVCPAFRVLRC 83
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 2.700e-19 Identity = 51/125 (40.80%), Postives = 67/125 (53.60%), Query Frame = 3
Query: 3 VCSYKGE--EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDIAFINHVDEKA-YTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLSGSDFMACSKNDLRRAYKQLY--PTGRGQDLLVKECDT 359
VCS E E PGDSEGPV+CHGF WPE A ++ I L + I +E+ Y GN+ GAP C C+EEMP+VS A+C+++ S C + L Y P G + LV+ CD
Sbjct: 62 VCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRF-----SIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Match: A0A7S1YUI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUI1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.120e-17 Identity = 45/127 (35.43%), Postives = 69/127 (54.33%), Query Frame = 3
Query: 27 FPGDSEGPVHCHGFVWPENASDDFIKYLALDIAFIN---HVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRK----------------ANLSGS--DFMAC-----SKNDLRRAYKQLYPTGRG 329
F G+ EGP+HCHGF W +++ +D +Y ++ +++ H+ ++ Y N+PGAP+C CLE+MP VSR+DCT+ + A L DF AC + N+L YK+L GR
Sbjct: 65 FEGNGEGPIHCHGFAWGQDSFEDAARYKGNNLFYVSMYDHMHQRGYVRNVPGAPMCGCLEKMPIVSRSDCTEIAETASWTFQWSADHDRFTARLDEVEVDFNACQGVNNNNNNLEAYYKRLVEEGRA 191 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13644.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13644.2178.1 >prot_E-siliculosus-1a_F_contig13644.2178.1 ID=prot_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp MSVATRAKSSPGIPKGLCTATGLCGLRTRATTSSNIWRWISLSSTTWTRRback to top mRNA from alignment at E-siliculosus-1a_F_contig13644:293..959- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13644.2178.1 ID=mRNA_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=667bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13644:293..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13644:293..959- >mRNA_E-siliculosus-1a_F_contig13644.2178.1 ID=mRNA_E-siliculosus-1a_F_contig13644.2178.1|Name=mRNA_E-siliculosus-1a_F_contig13644.2178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13644:293..959- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |