mRNA_E-siliculosus-1a_F_contig1364.2176.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1364.2176.1
Unique NamemRNA_E-siliculosus-1a_F_contig1364.2176.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1364contigE-siliculosus-1a_F_contig1364:19903..20599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size258
Model size260
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.9244347-CDS-E-siliculosus-1a_F_contig1364:19902..200031622927880.9244347-CDS-E-siliculosus-1a_F_contig1364:19902..20003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 19903..20003 +
1696318720.6989863-CDS-E-siliculosus-1a_F_contig1364:19902..200031696318720.6989863-CDS-E-siliculosus-1a_F_contig1364:19902..20003Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 19903..20003 +
1622927880.9430082-CDS-E-siliculosus-1a_F_contig1364:20442..205991622927880.9430082-CDS-E-siliculosus-1a_F_contig1364:20442..20599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 20443..20599 +
1696318720.706525-CDS-E-siliculosus-1a_F_contig1364:20442..205991696318720.706525-CDS-E-siliculosus-1a_F_contig1364:20442..20599Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 20443..20599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1364.2176.1prot_E-siliculosus-1a_F_contig1364.2176.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1364 19903..20599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1364.2176.1

>prot_E-siliculosus-1a_F_contig1364.2176.1 ID=prot_E-siliculosus-1a_F_contig1364.2176.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2176.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=86bp
AGGGDGGVLFGKVGGGGFGARKPAVDDDDDLVTSYEDTVGGVLADVVILF
RPATSASAPGAKLPAAAAGAEGEEEAVGGKKKKEEE
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mRNA from alignment at E-siliculosus-1a_F_contig1364:19903..20599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1364.2176.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2176.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2176.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=697bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:19903..20599+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGCGGGGGGGACGGAGGAGTGTTGTTTGGGAAGGTCGGTGGGGGGGG
CTTCGGTGCGAGAAAGCCTGCCGTGGATGATGACGACGACCTCGTGACAA
GGTGAAAGCAGCGGTCAACGTGCTTATATATGGTAGACGTCTTGTGTGCA
TGTGCTTGGGTTTCAGTTTTGCAGCGTGTCTGCGTGCTTCCCCTCATCTG
CTTGACAGACGTCTTGGTCGGCGGGTGACGGTAGCAGGTTCCCGACCTTC
CACGTTTGATGTTTTGTTTTGCCTCGTCGTTAGATGCTGTGTCGTGCTTG
TGTTCTCGCTGTTTCCCCCCTCCCGCCAACTCCACGGCCCACAAAGTGAT
GATGACAACGCGATGGAATTGGCGTACAGACCTGCTGCTTGTTTTCGAAC
GAGAACCCACTCCCCTTTGGCTTCGTCTTGACCTCGTGTGCTCCTGCTTT
TTTTCCCCATTGATTGCCACCCATTCCCCACATTTTCGCCGCGCTTGTGT
TGTTTACGGTCTCCCTTTTCTCAACGGTACCTAAAACCAGCTACGAAGAC
ACAGTCGGAGGAGTGCTGGCCGACGTGGTCATTCTGTTTCGACCAGCCAC
GTCCGCCTCCGCGCCCGGAGCGAAACTTCCAGCGGCCGCCGCGGGCGCAG
AAGGCGAGGAGGAAGCCGTTGGTGGAAAGAAGAAGAAGGAGGAGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1364:19903..20599+

>mRNA_E-siliculosus-1a_F_contig1364.2176.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2176.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2176.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:19903..20599+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCGGCGGGGGGGACGGAGGAGTGTTGTTTGGGAAGGTCGGTGGGGGGGG
CTTCGGTGCGAGAAAGCCTGCCGTGGATGATGACGACGACCTCGTGACAA
GGCCGGCGGGGGGGACGGAGGAGTGTTGTTTGGGAAGGTCGGTGGGGGGG
GCTTCGGTGCGAGAAAGCCTGCCGTGGATGATGACGACGACCTCGTGACA
AGCTACGAAGACACAGTCGGAGGAGTGCTGGCCGACGTGGTCATTCTGTT
TCGACCAGCCACGTCCGCCTCCGCGCCCGGAGCGAAACTTCCAGCGGCCG
CCGCGGGCGCAGAAGGCGAGGAGGAAGCCGTTGGTGGAAAGAAGAAGAAG
GAGGAGGAGCTACGAAGACACAGTCGGAGGAGTGCTGGCCGACGTGGTCA
TTCTGTTTCGACCAGCCACGTCCGCCTCCGCGCCCGGAGCGAAACTTCCA
GCGGCCGCCGCGGGCGCAGAAGGCGAGGAGGAAGCCGTTGGTGGAAAGAA
GAAGAAGGAGGAGGAG
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