mRNA_E-siliculosus-1a_F_contig1364.2175.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1364.2175.1
Unique NamemRNA_E-siliculosus-1a_F_contig1364.2175.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2175.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.610e-38
Identity = 88/103 (85.44%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:   85 SASAVTSPGYAPGDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT--GDXXXXXXGIPGSGGMVVHGPHLPGGGAFTGGQDGDGGGTGWLGGGTELSKIV 387
            SASA+ SP +A  DVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT  GD XXXXX +PGSGGMV HGPHLPGGGA  GGQDGDGGG GWLGGGTELSKIV
Sbjct:  424 SASALISPEFASDDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLTWDGDDXXXXXXVPGSGGMV-HGPHLPGGGALAGGQDGDGGGMGWLGGGTELSKIV 525
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.610e-3885.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1364contigE-siliculosus-1a_F_contig1364:19267..19653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size387
Model size387
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.9916637-CDS-E-siliculosus-1a_F_contig1364:19266..196531622927880.9916637-CDS-E-siliculosus-1a_F_contig1364:19266..19653Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 19267..19653 +
1696318720.7141228-CDS-E-siliculosus-1a_F_contig1364:19266..196531696318720.7141228-CDS-E-siliculosus-1a_F_contig1364:19266..19653Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 19267..19653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1364.2175.1prot_E-siliculosus-1a_F_contig1364.2175.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1364 19267..19653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1364.2175.1

>prot_E-siliculosus-1a_F_contig1364.2175.1 ID=prot_E-siliculosus-1a_F_contig1364.2175.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=129bp
PPPAKIPPPASRPLSEQIAAAVAAAPTTSASAVTSPGYAPGDVDMLAEMG
FDRARVVLALKACSGSVERAAEWLLTGDDDDGGGGIPGSGGMVVHGPHLP
GGGAFTGGQDGDGGGTGWLGGGTELSKIV
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mRNA from alignment at E-siliculosus-1a_F_contig1364:19267..19653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1364.2175.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2175.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=387bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:19267..19653+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGCCCGCCAAGATCCCGCCGCCAGCCTCGCGGCCGTTGTCGGAGCA
GATAGCGGCGGCGGTGGCGGCGGCGCCCACGACGTCGGCGTCGGCGGTGA
CGTCTCCCGGGTACGCGCCGGGCGACGTGGACATGCTCGCGGAGATGGGG
TTCGACAGGGCGCGGGTGGTGCTCGCGTTGAAGGCCTGCAGCGGCAGCGT
TGAGCGCGCGGCCGAGTGGCTTCTGACGGGAGACGATGACGATGGCGGTG
GTGGTATTCCCGGGAGCGGCGGGATGGTGGTGCACGGGCCGCACTTGCCC
GGCGGCGGCGCGTTTACGGGAGGGCAAGACGGCGACGGAGGAGGGACGGG
GTGGCTGGGCGGCGGAACCGAGCTGAGCAAGATTGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1364:19267..19653+

>mRNA_E-siliculosus-1a_F_contig1364.2175.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2175.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2175.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:19267..19653+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGCCCGCCAAGATCCCGCCGCCAGCCTCGCGGCCGTTGTCGGAGCA
GATAGCGGCGGCGGTGGCGGCGGCGCCCACGACGTCGGCGTCGGCGGTGA
CGTCTCCCGGGTACGCGCCGGGCGACGTGGACATGCTCGCGGAGATGGGG
TTCGACAGGGCGCGGGTGGTGCTCGCGTTGAAGGCCTGCAGCGGCAGCGT
TGAGCGCGCGGCCGAGTGGCTTCTGACGGGAGACGATGACGATGGCGGTG
GTGGTATTCCCGGGAGCGGCGGGATGGTGGTGCACGGGCCGCACTTGCCC
GGCGGCGGCGCGTTTACGGGAGGGCAAGACGGCGACGGAGGAGGGACGGG
GTGGCTGGGCGGCGGAACCGAGCTGAGCAAGATTGTTCCGCCGCCCGCCA
AGATCCCGCCGCCAGCCTCGCGGCCGTTGTCGGAGCAGATAGCGGCGGCG
GTGGCGGCGGCGCCCACGACGTCGGCGTCGGCGGTGACGTCTCCCGGGTA
CGCGCCGGGCGACGTGGACATGCTCGCGGAGATGGGGTTCGACAGGGCGC
GGGTGGTGCTCGCGTTGAAGGCCTGCAGCGGCAGCGTTGAGCGCGCGGCC
GAGTGGCTTCTGACGGGAGACGATGACGATGGCGGTGGTGGTATTCCCGG
GAGCGGCGGGATGGTGGTGCACGGGCCGCACTTGCCCGGCGGCGGCGCGT
TTACGGGAGGGCAAGACGGCGACGGAGGAGGGACGGGGTGGCTGGGCGGC
GGAACCGAGCTGAGCAAGATTGTT
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