mRNA_E-siliculosus-1a_F_contig1363.2171.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1363.2171.1
Unique NamemRNA_E-siliculosus-1a_F_contig1363.2171.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: D8LGT5_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT5_ECTSI)

HSP 1 Score: 502 bits (1293), Expect = 1.040e-178
Identity = 279/283 (98.59%), Postives = 280/283 (98.94%), Query Frame = 1 
Query:    1 MPRSCVALGVAMTAAASVGSVSAFTAPLSSQLSHRHXXXXXXXXXXXXXXXXXXXAPQGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASRSGK 849
            MPRSCVALGVAMTAAASVGSVSAFTAPLSSQLSHRHXXXXXXXXXXXXXXXXXXX  QGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDL+ GLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASRSGK
Sbjct:    1 MPRSCVALGVAMTAAASVGSVSAFTAPLSSQLSHRHXXXXXXXXXXXXXXXXXXXXXQGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLDKGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASRSGK 283
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: L1J2M3_GUITC (Peptidylprolyl isomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2M3_GUITC)

HSP 1 Score: 209 bits (532), Expect = 1.290e-64
Identity = 99/157 (63.06%), Postives = 119/157 (75.80%), Query Frame = 1 
Query:  349 KSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDK 819
            K + K +++YPDF    +GLQYKD KVG G +  DGDRVVFDW+GYTIGY G +F+   G KGG F  + D  R V+GS T+IPGLEEG+KGM+ GG+RQ+VV PELGYPE D  H RVGPKPSTF G RAL+FVL N G IDKTLLF +KV+R+DK
Sbjct:    7 KDYGKTKMKYPDFVATPSGLQYKDVKVGNGESPEDGDRVVFDWEGYTIGYYGRIFQAKNGVKGGAFADETDFQRCVLGSHTVIPGLEEGLKGMKVGGIRQLVVTPELGYPEDDPSHTRVGPKPSTFDGQRALNFVLFNKGLIDKTLLFNIKVIRIDK 163
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A835ZI71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI71_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.270e-64
Identity = 101/164 (61.59%), Postives = 118/164 (71.95%), Query Frame = 1 
Query:  355 FAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASRSG 846
            + KPR +YPDF +L +GLQYKD KVG+G   + GDRVV DW+GYTIGY G  F+     KGG F  D D  RF +G GT+IP L E +  M+ GGVRQI+VP E+GYPE DR H RVGPKPSTFSG RALDFVL N G IDKTLLF V++ RVDKPG R  + G
Sbjct:    9 YGKPRAKYPDFVELPSGLQYKDIKVGSGEKPSTGDRVVIDWEGYTIGYYGRPFQLKNSVKGGAFAADTDFLRFTLGDGTVIPALNEALATMKEGGVRQIIVPNEIGYPESDRGHTRVGPKPSTFSGNRALDFVLQNKGIIDKTLLFNVELKRVDKPGQRGFKRG 172
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A7S2WEE0_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEE0_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.720e-64
Identity = 113/209 (54.07%), Postives = 138/209 (66.03%), Query Frame = 1 
Query:  205 LASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDR 831
            +ASA+ A+  VA  A+  A E  K  P A L +G  Q            ++ KPRI YPDF   ++GLQYKD + G+G A   GDRVV DW+GYTIGY G  FE     KGG F +DKD  RFVVG  ++IP LEE ++GMQ G +RQI++PPELGYP  D  H +VGPKP+TFSG RALDFVL N G IDKTLL  ++V RVDKPG+R
Sbjct:    2 VASALGAS--VAPRASQAAEELSKNMPMAALSDGQVQ------------AYGKPRITYPDFTLTKSGLQYKDVRAGSGSAAAVGDRVVIDWEGYTIGYYGRPFEAKGKVKGGAFSEDKDYYRFVVGKRSVIPALEEAVQGMQPGAIRQIIIPPELGYPPSDPSHSQVGPKPTTFSGERALDFVLENKGLIDKTLLINLEVKRVDKPGER 196
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A835XRC4_9CHLO (Peptidylprolyl isomerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XRC4_9CHLO)

HSP 1 Score: 193 bits (490), Expect = 2.010e-57
Identity = 112/225 (49.78%), Postives = 141/225 (62.67%), Query Frame = 1 
Query:  184 PVSRRQCLASA---------MSAAGLVAGAA----AAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDK 819
            P +R  C+A+A         M+   L+AGAA    AA     P P   +R  EG ++      L G  K + KPR+RY D+ + E+GLQY+D K G G +   GD  + DWDGYTIGY G  FE    PKG  F  DKD  RFV+G G +IPG EE + GM+ GG+R+IVVP ELGYP  D +  R+GPKPSTF+G RALDFVLSN G IDKTLLF +++VRVD+
Sbjct:   21 PAARMHCVAAASPREEPSHTMARRSLLAGAALLLPAAAGAGLPAP---SRATEGISKYEPMDALKG--KDYGKPRMRYKDYTETESGLQYQDLKAGDGESPQPGDLCIVDWDGYTIGYYGRPFEARNKPKGSSFAGDKDFYRFVLGEGKVIPGFEEAVSGMKPGGIRRIVVPVELGYPAEDWR--RLGPKPSTFAGDRALDFVLSNRGMIDKTLLFDIELVRVDR 238
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A6U4NEY8_HEMAN (Peptidylprolyl isomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NEY8_HEMAN)

HSP 1 Score: 191 bits (485), Expect = 5.310e-56
Identity = 95/158 (60.13%), Postives = 115/158 (72.78%), Query Frame = 1 
Query:  361 KPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPP-ELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDR 831
            K   RYPDF    +GLQ+KDAK G G + +DGDRVV DW+GYTIGY G +F+      GG F  D    RFV+GSG+++PGL+EGI+GM+ GGVRQIVVPP EL YP  D  H RVGP+PSTF G RAL+FVL N G IDKTLLF VK++RVDK  ++
Sbjct:  126 KTVARYPDFTSTPSGLQFKDAKQGTGSSPSDGDRVVIDWEGYTIGYYGRIFQKKNSVVGGAFADDPGYYRFVLGSGSLLPGLDEGIRGMKPGGVRQIVVPPGELNYPADDSGHKRVGPRPSTFDGMRALNFVLENKGLIDKTLLFNVKLIRVDKKNEQ 283
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A7S0VSM8_9CRYP (Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSM8_9CRYP)

HSP 1 Score: 191 bits (485), Expect = 5.460e-56
Identity = 95/154 (61.69%), Postives = 113/154 (73.38%), Query Frame = 1 
Query:  373 RYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPP-ELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDR 831
            RYPD+   E+GLQYKDAK G G +  DGDRVV DW+GYTIGY G +F+      GG F  D    RFV+G+G+++PGLEEGIKGM+ GGVRQIVVPP  L YP  D  H RVGP+PSTF G RAL+FV+ N G IDKTLLF VK++RVDK  D+
Sbjct:  130 RYPDYVSTESGLQYKDAKQGKGESPGDGDRVVIDWEGYTIGYYGRIFQKKNSVVGGAFADDPGYYRFVLGTGSLLPGLEEGIKGMKPGGVRQIVVPPGPLNYPIDDSGHKRVGPRPSTFDGMRALNFVMENKGLIDKTLLFNVKLIRVDKKNDK 283
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A5J4Z9W9_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9W9_PORPP)

HSP 1 Score: 189 bits (481), Expect = 1.580e-55
Identity = 91/172 (52.91%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:  307 DTQGSDYMELGG-GSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDK-DKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVD 816
            ++   +++++ G   K + K  + Y DF   ++GLQYKD +VG G+   +GDR V  W+GYTIGY G +FE     +GG FD  DKD  RFV+GSGT IP L+E ++ M+ GGVRQ++VPPELGYP  D +H++VGP+PSTFSG RALDFVL N G IDKTLL  +++VRVD
Sbjct:  105 ESMAGEFVKMEGLQGKDYGKQAMTYSDFVRTDSGLQYKDVRVGTGKQPEEGDRAVLKWEGYTIGYLGRIFEAKGKAQGGAFDSADKDYFRFVLGSGTAIPALDEAVRSMREGGVRQVIVPPELGYPASDPRHEKVGPRPSTFSGQRALDFVLENRGLIDKTLLINIQLVRVD 276
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A0G4END1_VITBC (Peptidylprolyl isomerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4END1_VITBC)

HSP 1 Score: 183 bits (464), Expect = 2.730e-54
Identity = 93/165 (56.36%), Postives = 116/165 (70.30%), Query Frame = 1 
Query:  340 GGSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGP-KGGDFD----KDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYP-EGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVD 816
            GGS+ F K R +YPDF+   +GLQ+KD K G G     GDRVV DW+GYTIGY G +FE   G  KG  F      D    RFVVGSG++IP ++E ++ M+ GG+RQIVVPPE+GYP E D  H+ VGPKPSTFSG R+L+FVL N G +DKTLLF +K++RVD
Sbjct:    7 GGSQRFGKTRAKYPDFEQTASGLQFKDVKEGEGTPPAKGDRVVLDWEGYTIGYYGRIFEKKSGVVKGSAFADNVYNDPKLMRFVVGSGSVIPAIDEAVQSMKPGGIRQIVVPPEIGYPMEKDPNHEMVGPKPSTFSGQRSLNFVLENQGLVDKTLLFNLKLLRVD 171
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Match: A0A1Z5KHM4_FISSO (Peptidylprolyl isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHM4_FISSO)

HSP 1 Score: 185 bits (469), Expect = 2.900e-54
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 1 
Query:  373 RYPDFKDLENGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKP 822
            +Y DF  L +G+ Y+D  +G G     GDRVV+DW GYTIGY G  F+   GP+GG FDKD D  R V+GS  I+PGLEE   GMQAGGVRQ+VVP ++ YP  D KH++VGPKPSTFSG RAL+FVL NP  +D+TLLF VKVVR+DKP
Sbjct:   82 QYEDFNKLPSGVSYRDVNLGKGPEAIKGDRVVYDWSGYTIGYFGRPFQAKGGPQGGAFDKDLDYERTVLGSHQIVPGLEEAFYGMQAGGVRQVVVPYKVSYPADDLKHEKVGPKPSTFSGMRALNFVLENPR-LDRTLLFNVKVVRIDKP 230
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1363.2171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT5_ECTSI1.040e-17898.59Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
L1J2M3_GUITC1.290e-6463.06Peptidylprolyl isomerase n=1 Tax=Guillardia theta ... [more]
A0A835ZI71_9STRA2.270e-6461.59Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S2WEE0_9STRA2.720e-6454.07Peptidylprolyl isomerase n=1 Tax=Rhizochromulina m... [more]
A0A835XRC4_9CHLO2.010e-5749.78Peptidylprolyl isomerase n=1 Tax=Edaphochlamys deb... [more]
A0A6U4NEY8_HEMAN5.310e-5660.13Peptidylprolyl isomerase n=1 Tax=Hemiselmis anders... [more]
A0A7S0VSM8_9CRYP5.460e-5661.69Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida... [more]
A0A5J4Z9W9_PORPP1.580e-5552.91Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]
A0A0G4END1_VITBC2.730e-5456.36Peptidylprolyl isomerase n=2 Tax=Vitrella brassica... [more]
A0A1Z5KHM4_FISSO2.900e-5460.67Peptidylprolyl isomerase n=1 Tax=Fistulifera solar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1363contigE-siliculosus-1a_F_contig1363:25199..28340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Stop1
Start1
Cds size852
Model size852
Exons5
Ec32 orthologEc-07_005110.1
Ec32 ortholog descriptionPlastid FKBP domain protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EggNOG OGsCOG0545@1,KOG0552@2759
EggNOG free text desc.histone peptidyl-prolyl isomerization
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Seed eggNOG ortholog2880.D8LGT5
Seed ortholog evalue6.7e-140
Seed ortholog score503.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1363.2171.1prot_E-siliculosus-1a_F_contig1363.2171.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1363 25199..28340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.4819636-CDS-E-siliculosus-1a_F_contig1363:25198..253661622927880.4819636-CDS-E-siliculosus-1a_F_contig1363:25198..25366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 25199..25366 +
1696318720.612253-CDS-E-siliculosus-1a_F_contig1363:25198..253661696318720.612253-CDS-E-siliculosus-1a_F_contig1363:25198..25366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 25199..25366 +
1622927880.7198164-CDS-E-siliculosus-1a_F_contig1363:26535..267471622927880.7198164-CDS-E-siliculosus-1a_F_contig1363:26535..26747Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 26536..26747 +
1696318720.624038-CDS-E-siliculosus-1a_F_contig1363:26535..267471696318720.624038-CDS-E-siliculosus-1a_F_contig1363:26535..26747Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 26536..26747 +
1622927880.732313-CDS-E-siliculosus-1a_F_contig1363:27332..274451622927880.732313-CDS-E-siliculosus-1a_F_contig1363:27332..27445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 27333..27445 +
1696318720.6331558-CDS-E-siliculosus-1a_F_contig1363:27332..274451696318720.6331558-CDS-E-siliculosus-1a_F_contig1363:27332..27445Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 27333..27445 +
1622927880.7505217-CDS-E-siliculosus-1a_F_contig1363:27631..278041622927880.7505217-CDS-E-siliculosus-1a_F_contig1363:27631..27804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 27632..27804 +
1696318720.6444442-CDS-E-siliculosus-1a_F_contig1363:27631..278041696318720.6444442-CDS-E-siliculosus-1a_F_contig1363:27631..27804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 27632..27804 +
1622927880.7640805-CDS-E-siliculosus-1a_F_contig1363:28154..283401622927880.7640805-CDS-E-siliculosus-1a_F_contig1363:28154..28340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 28155..28340 +
1696318720.6537747-CDS-E-siliculosus-1a_F_contig1363:28154..283401696318720.6537747-CDS-E-siliculosus-1a_F_contig1363:28154..28340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 28155..28340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1363.2171.1

>prot_E-siliculosus-1a_F_contig1363.2171.1 ID=prot_E-siliculosus-1a_F_contig1363.2171.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2171.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp
MPRSCVALGVAMTAAASVGSVSAFTAPLSSQLSHRHHQQESSLRMMSSEG
GKAAAAPQGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLP
EGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLENGLQYKDAKVGAGRAVT
DGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIP
GLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDF
VLSNPGYIDKTLLFTVKVVRVDKPGDRASRSGK*
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mRNA from alignment at E-siliculosus-1a_F_contig1363:25199..28340+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1363.2171.1 ID=mRNA_E-siliculosus-1a_F_contig1363.2171.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2171.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3142bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1363:25199..28340+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCGGTCGTGCGTAGCGCTTGGCGTGGCCATGACGGCTGCCGCTTC
GGTGGGGTCGGTCTCTGCATTCACCGCGCCGCTTTCGAGTCAGCTGTCGC
ACCGTCATCACCAGCAGGAGAGCTCGCTGCGCATGATGAGCTCAGAAGGG
GGAAAGGCAGCTGCTGCTGTGAGTCTGTGTAGCAGCGCGTACACCTTACA
GTTGTGGCTGTTGGTGTTCAGCGCAATCGACTCTTTGCCATTCATTGTCG
GTGGACGCCACCATATAGCATACACAGCAGCAGTAGTGCGTGTCGTGGAT
ATCGCAAAACCAGCTACGGAACACGGCTGTTCTCAGAGTAGGTGGGGTTG
CATCAGTCAACATTTTAGTGTCACATGAAGGACACACTCAGCCGGCTGAA
GAGACTGAAAGGTACGAAAGGAACCGTAGTTTCAGTGACCCGAAAGGGAT
GATAAGTTTAATCAAGTTTTGGATGGACGTTTTCTGTTCCGCAGCTTGGA
TGCTCGTTTGTCTTCCAAGCTGGCGCTGGCTCACACACACTTCTTAGATT
ACTTGCGGTGTGTAGACTCCGCGCGCACTCTGCACTACATATTAAGACCG
GGTAGGACGTGTGTAACGTGTACCCCAACACACCAAAAGCAAGCGCTAAT
TCGCTGGCATCGACAACACGGCGTTACCTGTGCTCTTCTTTCCCTCGAAC
ATCTCAATCTTCAATAGCGACGAGCCCCATGTAGATATCCACGCTGTGAT
GAAAAACTGTTGACGTTTATTTGCCGTTTAAACGCCTCTTGATTTCAAGT
TGAACAATCCGTCCGTGTACCCGCGAAGGTCAGCGATCTAAAGGCACCGC
TGCTCAACAAGCGTCCTGACCTATTTCACTATTAAGAGGGACGCTATTCA
CTTTCGTGCAGTAGTGCATGCACCTGTGGGGTATGCGGCTGTGTGTACTC
AGCGTTTCCTCGACGTACAAAGGTGGACTAAATCAAATACTTGCCGTAGA
TGCCTCGGCTGATGATCGAGCGAGGAAATTTTGAATGAGGGTCGACGCGC
GGCTGCCGGCAGCCAGCACAGCAGCGTATACACGCATCAGCTCAAACGTT
TGATAGGCGGAAATATCGGGTAACGCGCCAAGCGCCAGGAGATACCGCTA
CATGAACCGACACATGTTTCACCCGCACAGACAATTCCGTTACACGCCAA
CATGGCGAAACACGCCGCTTGCATGACGTTCGCCTTCACGAGAGCTCGCA
CGGCCGCTTACGACAACAAACCCTCTACCCCCAACCAACGGCACCGCCGC
CCCCCTTCTCGGAATAATAAAAATTGACCACCAACAGCCTCAAGGAGACG
GGCCGGTAAGCCGCCGGCAGTGCCTCGCTTCCGCCATGTCGGCGGCGGGA
CTCGTGGCCGGGGCAGCGGCGGCGGGGGCGCGCGAGGCGCCGAAGCCTCC
TCCCCGAGCCCGCTTGCCGGAGGGGGACACTCAGGGGTCCGATTACATGG
AGCTGGGCGGGGGGAGCAAGAGCTTCGCGAAGCCGCGCATCCGCTACCCG
TGAGAGCCAATATTAGACGATTGGTCCAAATGCACTCGCACGTCACATCC
ATCAGCAGCAGCAGGTTGTTACTTTGCATGAGAATGGGGGGTGATTTCGA
ACTTGTGCGCCCAGTATACCACTGCTCTGTGTGCGACTATGGACGCCGCA
TATCGTGCCCTACCGCTTCTCATGAGTCGCATGCGCAATGTCCTGTTTTG
GTGTGGAATCCGTTGTCTGAGATGGCGCCTTTTGAAACGGCAGGTAACTT
GGTTGCGTGCGACTGAGCCTGACTCCGAGTGGAAGGGCACTCCCCCCTCT
TTCTGGCGAATATTTGCTATAGTCTTGGGTACCTCTCCTGAGGTACTTGC
GATTGTATGCACAAGGATTTCGTGTAGTATTATTGTCGTCACATGTGTTG
ATGTTCTTCGTTTGTGTGTGTTTAAAAAGAGGAATGTATCTGCAAGAGTA
GAATACTTGTATCGTCACGTTTGTTGATGTTTGTGCGTTGACAATGTCCC
TGTTTCCCCGTCGTGCGCACGTGCTCGACCACGTCATCCCATCCTGCCCA
ACGTGTGTGCGCGACATGCTACTTGCCCCTGAAGAGATTTCAAAGATCTC
GAGAACGGCCTCCAGTACAAGGACGCTAAGGTCGGCGCGGGGAGGGCTGT
CACGGATGGGGACAGGGTTGTCTTCGACTGGGACGGGTACACAATCGGTG
AGGGATTAAGTTGTGCTATAGATATGTACGAAATTGTGGCCGCAGCGTGG
GATTGCTCAGAAGAACGATGAATGGCACACCGCCGCCGCCTCGAAAGCGC
AGGCATTGGTTACGACGCGCAACAACCGAAGCCCCCCCCCCCGAACCCAT
TTCACGAAACGCATCGCATTTTACGAACGCCAGGGTACAACGGAAACCTG
TTCGAGACTAACAAGGGGCCGAAGGGAGGGGACTTCGACAAGGACAAGGA
CTCGTCCCGTTTCGTGGTGGGCAGCGGTACCATCATCCCGGGGCTGGAGG
AGGGCATCAAGGGAATGCAAGCCGGGGGCGTGCGGCAGATTGTGGTGCCG
CCTGAGGTACGACGGACGACTGCCGAAGTCAGCTCCGCCTGTACTTGCAA
CCGGTGCTCATAGAGTGGGGGTCCCTCCAAGTAGTAGTGACGGTTGGATG
GTGCCACTGGCCCGATGTTTTGTACTACTGCCGGTGAAGTCGCGTGATCA
CGGATGGGATATTCAACCTGTCGTCATTCTTCTCTGAATACACCGCAGTA
CCGGGTGCGCGGTAGGTAATACAACCCCCGGTGAATCTGGCGGGCACATA
CATACCGGCAGAGCTATGTTACGATTCCATACCAAATTCAACCCTCGTAC
CCAAACCAACCGGACGGACCCTCCGTCTCCGGCACGTCTGCCGCCGTTGC
TGCCAGCTCGGATACCCCGAGGGCGACCGCAAGCACGACAGGGTGGGGCC
GAAGCCGTCCACCTTTTCGGGCACCCGCGCGCTGGACTTCGTGCTCAGCA
ACCCCGGGTACATCGACAAGACGCTGCTCTTCACCGTCAAGGTTGTTCGC
GTGGACAAGCCGGGAGACAGGGCCTCGCGCTCCGGAAAGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1363:25199..28340+

>mRNA_E-siliculosus-1a_F_contig1363.2171.1 ID=mRNA_E-siliculosus-1a_F_contig1363.2171.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2171.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1363:25199..28340+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCGGTCGTGCGTAGCGCTTGGCGTGGCCATGACGGCTGCCGCTTC
GGTGGGGTCGGTCTCTGCATTCACCGCGCCGCTTTCGAGTCAGCTGTCGC
ACCGTCATCACCAGCAGGAGAGCTCGCTGCGCATGATGAGCTCAGAAGGG
GGAAAGGCAGCTGCTGCTATGCCTCGGTCGTGCGTAGCGCTTGGCGTGGC
CATGACGGCTGCCGCTTCGGTGGGGTCGGTCTCTGCATTCACCGCGCCGC
TTTCGAGTCAGCTGTCGCACCGTCATCACCAGCAGGAGAGCTCGCTGCGC
ATGATGAGCTCAGAAGGGGGAAAGGCAGCTGCTGCTCCTCAAGGAGACGG
GCCGGTAAGCCGCCGGCAGTGCCTCGCTTCCGCCATGTCGGCGGCGGGAC
TCGTGGCCGGGGCAGCGGCGGCGGGGGCGCGCGAGGCGCCGAAGCCTCCT
CCCCGAGCCCGCTTGCCGGAGGGGGACACTCAGGGGTCCGATTACATGGA
GCTGGGCGGGGGGAGCAAGAGCTTCGCGAAGCCGCGCATCCGCTACCCCC
TCAAGGAGACGGGCCGGTAAGCCGCCGGCAGTGCCTCGCTTCCGCCATGT
CGGCGGCGGGACTCGTGGCCGGGGCAGCGGCGGCGGGGGCGCGCGAGGCG
CCGAAGCCTCCTCCCCGAGCCCGCTTGCCGGAGGGGGACACTCAGGGGTC
CGATTACATGGAGCTGGGCGGGGGGAGCAAGAGCTTCGCGAAGCCGCGCA
TCCGCTACCCAGATTTCAAAGATCTCGAGAACGGCCTCCAGTACAAGGAC
GCTAAGGTCGGCGCGGGGAGGGCTGTCACGGATGGGGACAGGGTTGTCTT
CGACTGGGACGGGTACACAATCGAGATTTCAAAGATCTCGAGAACGGCCT
CCAGTACAAGGACGCTAAGGTCGGCGCGGGGAGGGCTGTCACGGATGGGG
ACAGGGTTGTCTTCGACTGGGACGGGTACACAATCGGGTACAACGGAAAC
CTGTTCGAGACTAACAAGGGGCCGAAGGGAGGGGACTTCGACAAGGACAA
GGACTCGTCCCGTTTCGTGGTGGGCAGCGGTACCATCATCCCGGGGCTGG
AGGAGGGCATCAAGGGAATGCAAGCCGGGGGCGTGCGGCAGATTGTGGTG
CCGCCTGAGGGTACAACGGAAACCTGTTCGAGACTAACAAGGGGCCGAAG
GGAGGGGACTTCGACAAGGACAAGGACTCGTCCCGTTTCGTGGTGGGCAG
CGGTACCATCATCCCGGGGCTGGAGGAGGGCATCAAGGGAATGCAAGCCG
GGGGCGTGCGGCAGATTGTGGTGCCGCCTGAGCTCGGATACCCCGAGGGC
GACCGCAAGCACGACAGGGTGGGGCCGAAGCCGTCCACCTTTTCGGGCAC
CCGCGCGCTGGACTTCGTGCTCAGCAACCCCGGGTACATCGACAAGACGC
TGCTCTTCACCGTCAAGGTTGTTCGCGTGGACAAGCCGGGAGACAGGGCC
TCGCGCTCCGGAAAGTAGCTCGGATACCCCGAGGGCGACCGCAAGCACGA
CAGGGTGGGGCCGAAGCCGTCCACCTTTTCGGGCACCCGCGCGCTGGACT
TCGTGCTCAGCAACCCCGGGTACATCGACAAGACGCTGCTCTTCACCGTC
AAGGTTGTTCGCGTGGACAAGCCGGGAGACAGGGCCTCGCGCTCCGGAAA
GTAG
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