mRNA_E-siliculosus-1a_F_contig1363.2168.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1363.2168.1
Unique NamemRNA_E-siliculosus-1a_F_contig1363.2168.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: D8LGT3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT3_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 9.390e-124
Identity = 211/223 (94.62%), Postives = 215/223 (96.41%), Query Frame = 2 
Query:   71 MKSAFLAAVLALLSVASTDAFVAGSAKLPVRTAASSARTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAYL 739
            MKSAFLAAVLALLSVASTDAFVAGSAKLPVR AAS  RTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDP+SAVKDS+KMASDGVKKDLAALKNYQSATKDISD LAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRS RKVE+L KKL KLDQAF+ LNAYL
Sbjct:    1 MKSAFLAAVLALLSVASTDAFVAGSAKLPVRAAAS--RTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPRSAVKDSDKMASDGVKKDLAALKNYQSATKDISDTLAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSPRKVEILNKKLMKLDQAFEKLNAYL 221
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A7R9VT45_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT45_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.920e-28
Identity = 76/180 (42.22%), Postives = 111/180 (61.67%), Query Frame = 2 
Query:  200 MSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAYL 739
            M+ E  +R  FLQQ +A   S A +   +  A  GG    S       VLDP+SA  D++ +ASD V+K L A+K+Y S+ K + D L+ D QA++ PK+++ F FA+ R  LN VN  FDEDTQRGTD +IR ++QD  EL  A++ K  V RS R+++++  KL KL +AF+   A++
Sbjct:    2 MAQEGTTRSQFLQQSLAAAASFAVLPQSANAAKYGGFGAGSPE-----VLDPKSAEVDADILASDAVQKALGAVKSYASSVKAMQDTLSADSQADIGPKIRKDFDFAQLRADLNTVNSAFDEDTQRGTDRLIRIVMQDITELETANRQKDGVARSERRLDIMKGKLDKLGKAFNDFLAFV 176
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A6U0F263_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0F263_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.850e-28
Identity = 74/186 (39.78%), Postives = 112/186 (60.22%), Query Frame = 2 
Query:  182 RTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAYL 739
            R +   +SAE QSR  FL Q  A + +LA   A S  A  G     S       V+DP SA+ D + +AS+ V+K ++ +++Y +A K +S  +A D QA++ P +++   F + R   NGV + FDEDTQRGTD ++R +LQD  EL  A+K KP VPRS +++ ++  KL KL++AFD   A++
Sbjct:   26 RQSTTALSAE-QSRSGFLAQSAAAIATLAAFPATSNAAKYGSFGAGSPE-----VIDPSSAIIDQDILASESVQKCISGIRSYLTAIKSMSATVASDSQADIGPSIRKELDFVQVRADFNGVTEAFDEDTQRGTDRLVRIILQDITELETANKQKPGVPRSEKRLSIVKGKLAKLEKAFDDFLAFV 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A7S2EU98_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EU98_9STRA)

HSP 1 Score: 115 bits (287), Expect = 9.180e-26
Identity = 70/186 (37.63%), Postives = 112/186 (60.22%), Query Frame = 2 
Query:  182 RTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAYL 739
            R +   +SAE QSR  FL Q  A   ++A   ++S  A  G     S       VLDP++A+ D + + ++ V+K ++ +++Y SA K +S  +A D QA++ P +++   F + R   NGV + FDEDTQRGTD ++R +LQD  EL  A++ KP VPRS +++ ++  KL KL++AFD   A++
Sbjct:   26 RQSTTALSAE-QSRSDFLTQSAAAFATIAAFPSVSNAAKYGSFGAGSPE-----VLDPKTAIIDEDILKTESVQKCISGIRSYLSAVKSMSATVAADSQADIGPSIRKELDFVQVRADFNGVTEAFDEDTQRGTDRLVRIILQDITELETANRQKPGVPRSEKRLSIVQGKLSKLEKAFDDFLAFV 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A7S2Y0S9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0S9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.650e-24
Identity = 87/225 (38.67%), Postives = 128/225 (56.89%), Query Frame = 2 
Query:   89 AAVLALLSVASTD---AFVAGSAKLPVRTAASSARTAAVEMSAEPQSRQAFLQQGVAGVLSLAGIAALSQPASA----GGLSPVSNSDKWA--GVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAY 736
            AA +ALL +A+ D   AFVA +  +  R       +  + M A   SR  F+ + + G    A + A S PASA    GG     +  K++  GV+DP++A  D+++++   VK DL  LK Y +  K+    +AKDPQ +++  VQ    F + R  LN +N VFDEDTQRGTD +IR+ LQD  EL  +++ KP V RS RK+ ++ KKL+KL+  F  L A+
Sbjct:    4 AAAIALLFLAANDQVSAFVAPAGHVQTR-------STQMTMKAGEVSRTEFITKSLIGAT--ATLVASSAPASAYNYFGG-----DKAKYSTPGVVDPKTASIDTDELSK--VKGDLDTLKGYLTTVKEFRAQMAKDPQTSLVADVQSKLDFGKMRTTLNNLNGVFDEDTQRGTDRLIRDTLQDVYELESSARQKPGVDRSPRKITLVNKKLEKLENVFTDLLAF 212
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A7S2BZB6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZB6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.830e-24
Identity = 58/126 (46.03%), Postives = 83/126 (65.87%), Query Frame = 2 
Query:  344 VLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFD 721
            VLDP+S   DS  +AS  V+  L  ++ YQ   K +  A+ ++ Q ++ P V+++F F++ R  LN VN   DEDTQRGTD +IR ++QD  EL  A+ +KP  PRSARKVE+L +KL KL ++FD
Sbjct:   75 VLDPKSGTIDSEILASSSVQDSLKNVRRYQDIVKQMEQAMIQNDQVDLGPAVRESFDFSKIRYALNNVNSALDEDTQRGTDRLIRGVIQDLAELENANLVKPGNPRSARKVEILNRKLSKLCKSFD 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A1Z5KC14_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC14_FISSO)

HSP 1 Score: 108 bits (270), Expect = 2.270e-23
Identity = 60/132 (45.45%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:  341 GVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAY 736
            GVLDP++A  D++ + SD V+  L  +K Y+SA +D+  AL  D Q NV   + +   FA+ R  LN VN  F+EDTQRGTD +IR ++QD  EL QA+  K  +PRS R+VE++  KL KL++AF    A+
Sbjct:   79 GVLDPKTAEIDADILKSDAVQSALKKVKGYRSAVQDMQAALKADSQVNVRKTIIKDLDFADLRDTLNTVNTAFEEDTQRGTDRLIRVIMQDITELEQANTQKDGIPRSPRRVEIMEGKLAKLEKAFSDFLAF 210
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: K0TRD5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRD5_THAOC)

HSP 1 Score: 106 bits (265), Expect = 1.220e-22
Identity = 67/173 (38.73%), Postives = 100/173 (57.80%), Query Frame = 2 
Query:  218 SRQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFDTLNAY 736
            SR  FLQQ  A V +   +   +  A  GG    S       V+DP+ A+ D + + S+ V+K L A+K Y+ +T D+   L+ D QA++  K+++ F F+  R  LN +N   DEDTQRGTD I+R +LQD  EL  + K KP VPRS +++  +  KL KL+++FD   A+
Sbjct:   48 SRMEFLQQSAAAVAAFTMLPGQANAAKYGGFGAGSPE-----VIDPKDALVDEDILKSEPVQKALEAVKGYKQSTVDLKTVLSSDNQADIGAKIRKDFDFSVIRTDLNAINAALDEDTQRGTDRIVRAILQDITELEVSQKQKPGVPRSEKRLGNVIGKLDKLEKSFDDYLAF 215
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: B8BU34_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BU34_THAPS)

HSP 1 Score: 108 bits (269), Expect = 1.250e-22
Identity = 57/125 (45.60%), Postives = 84/125 (67.20%), Query Frame = 2 
Query:  344 VLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAF 718
            V+DP+ A+ D + + SD V+K LAA++ YQ +  D+  ALA D QA++ PK+++ F F+  R  LN +N   DEDTQRGTD I+R +LQD  EL  A K K  VPRS ++++ +  KL KL+++F
Sbjct:  127 VVDPKDAIIDEDILKSDSVQKGLAAVRGYQQSVVDMKSALASDSQADIGPKIRKDFDFSVIRTDLNAINAALDEDTQRGTDRIVRAILQDITELEVAQKQKAGVPRSDKRLKTVCGKLDKLEKSF 251
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BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Match: A0A7S2UA53_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA53_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.690e-22
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = 2 
Query:  344 VLDPQSAVKDSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFAEFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSARKVEVLTKKLKKLDQAFD 721
            VLDP+ A+ D++ +A+  V+  L  +K Y S   ++   LAKD QA++ P V++   F++ R  LN VN+ FDEDTQRGTD IIR +LQD  EL  A+  KP +PRS R++ ++  KL KL  AF+
Sbjct:   74 VLDPKEAIVDTDILATASVQGALKGVKGYLSTVLELKSTLAKDSQADIGPSVRRQLDFSKIRADLNNVNEAFDEDTQRGTDRIIRIILQDITELEAANTQKPGIPRSERRLGIMNAKLTKLQTAFE 199
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1363.2168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT3_ECTSI9.390e-12494.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9VT45_9STRA1.920e-2842.22Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U0F263_9STRA5.850e-2839.78Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2EU98_9STRA9.180e-2637.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2Y0S9_9STRA3.650e-2438.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BZB6_9STRA7.830e-2446.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5KC14_FISSO2.270e-2345.45Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
K0TRD5_THAOC1.220e-2238.73Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BU34_THAPS1.250e-2245.60Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2UA53_9STRA1.690e-2245.24Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1363contigE-siliculosus-1a_F_contig1363:7375..12488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size672
Model size1737
Exons7
Ec32 orthologEc-07_005130.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2C0DF@1,2S41X@2759
Seed eggNOG ortholog2880.D8LGT3
Seed ortholog evalue5.2e-103
Seed ortholog score380.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.8745012-UTR-E-siliculosus-1a_F_contig1363:7374..74441622927879.8745012-UTR-E-siliculosus-1a_F_contig1363:7374..7444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1363 7375..7444 +
1696318720.3672009-UTR-E-siliculosus-1a_F_contig1363:7374..74441696318720.3672009-UTR-E-siliculosus-1a_F_contig1363:7374..7444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1363 7375..7444 +
1622927880.059176-UTR-E-siliculosus-1a_F_contig1363:11493..124881622927880.059176-UTR-E-siliculosus-1a_F_contig1363:11493..12488Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1363 11494..12488 +
1696318720.438751-UTR-E-siliculosus-1a_F_contig1363:11493..124881696318720.438751-UTR-E-siliculosus-1a_F_contig1363:11493..12488Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1363 11494..12488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.898933-CDS-E-siliculosus-1a_F_contig1363:7444..75621622927879.898933-CDS-E-siliculosus-1a_F_contig1363:7444..7562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 7445..7562 +
1696318720.3759434-CDS-E-siliculosus-1a_F_contig1363:7444..75621696318720.3759434-CDS-E-siliculosus-1a_F_contig1363:7444..7562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 7445..7562 +
1622927879.9342453-CDS-E-siliculosus-1a_F_contig1363:7865..79191622927879.9342453-CDS-E-siliculosus-1a_F_contig1363:7865..7919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 7866..7919 +
1696318720.3844328-CDS-E-siliculosus-1a_F_contig1363:7865..79191696318720.3844328-CDS-E-siliculosus-1a_F_contig1363:7865..7919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 7866..7919 +
1622927879.9544032-CDS-E-siliculosus-1a_F_contig1363:8761..88621622927879.9544032-CDS-E-siliculosus-1a_F_contig1363:8761..8862Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 8762..8862 +
1696318720.3940465-CDS-E-siliculosus-1a_F_contig1363:8761..88621696318720.3940465-CDS-E-siliculosus-1a_F_contig1363:8761..8862Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 8762..8862 +
1622927879.972666-CDS-E-siliculosus-1a_F_contig1363:9606..97261622927879.972666-CDS-E-siliculosus-1a_F_contig1363:9606..9726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 9607..9726 +
1696318720.4021642-CDS-E-siliculosus-1a_F_contig1363:9606..97261696318720.4021642-CDS-E-siliculosus-1a_F_contig1363:9606..9726Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 9607..9726 +
1622927879.9893491-CDS-E-siliculosus-1a_F_contig1363:10218..103521622927879.9893491-CDS-E-siliculosus-1a_F_contig1363:10218..10352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 10219..10352 +
1696318720.4102104-CDS-E-siliculosus-1a_F_contig1363:10218..103521696318720.4102104-CDS-E-siliculosus-1a_F_contig1363:10218..10352Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 10219..10352 +
1622927880.0078576-CDS-E-siliculosus-1a_F_contig1363:10723..107991622927880.0078576-CDS-E-siliculosus-1a_F_contig1363:10723..10799Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 10724..10799 +
1696318720.419119-CDS-E-siliculosus-1a_F_contig1363:10723..107991696318720.419119-CDS-E-siliculosus-1a_F_contig1363:10723..10799Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 10724..10799 +
1622927880.0297265-CDS-E-siliculosus-1a_F_contig1363:11424..114931622927880.0297265-CDS-E-siliculosus-1a_F_contig1363:11424..11493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 11425..11493 +
1696318720.4280877-CDS-E-siliculosus-1a_F_contig1363:11424..114931696318720.4280877-CDS-E-siliculosus-1a_F_contig1363:11424..11493Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1363 11425..11493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1363.2168.1prot_E-siliculosus-1a_F_contig1363.2168.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1363 7445..11493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1363.2168.1

>prot_E-siliculosus-1a_F_contig1363.2168.1 ID=prot_E-siliculosus-1a_F_contig1363.2168.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=224bp
MKSAFLAAVLALLSVASTDAFVAGSAKLPVRTAASSARTAAVEMSAEPQS
RQAFLQQGVAGVLSLAGIAALSQPASAGGLSPVSNSDKWAGVLDPQSAVK
DSNKMASDGVKKDLAALKNYQSATKDISDALAKDPQANVLPKVQQTFKFA
EFRQVLNGVNDVFDEDTQRGTDLIIRNMLQDALELSQASKMKPDVPRSAR
KVEVLTKKLKKLDQAFDTLNAYL*
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mRNA from alignment at E-siliculosus-1a_F_contig1363:7375..12488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1363.2168.1 ID=mRNA_E-siliculosus-1a_F_contig1363.2168.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5114bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1363:7375..12488+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGAGAAAGCACACACGCATTCTCTCCTCTCGACCGCTCTCTTCTTCC
GAACCTCCGAAGTCACCACCATGAAGTCTGCGTTCCTTGCGGCCGTTCTC
GCCCTCCTTTCGGTGGCCTCCACCGACGCGTTCGTCGCGGGATCCGCGAA
GCTCCCCGTACGCACAGCAGCATCCTCTGCCCGAACAGGTGGGAGGAACA
TCATTACCTACATGACACATCATGACATTCGGCACCCTGTTCATGAGATT
AGAACTAGGTCTTGCTGCTGCGCGCGTGGCTGAGAGCTCTGCATGAGTGG
GGACAACATGCTTGCCTGCGGTGGATGCACGGAATATTGCACCAGCACGA
GATGTAGTAATAGCGAGCAATCCAACTCGAATTTCTCCGTTCAGCGGGTT
GCAATCGTATCGATCCCCTCGTCAGCACGCACACTTTTTCTTGCATCCCA
CGGACCTTTCTCTGCCCAAACTCCCGTTCCTGCTGTTGTAGCTGCCGTCG
AGATGAGCGCGGAACCGCAGTCGAGACAAGCGTTCCTCCAGCAAGGTGAG
AGCTCCGTCTTGTCGTTGCTGCCTACGCTTTTTACCACACAGCATCAGGA
TTTTTTTTTTTTTCTTGTTGCAAAAAAAGAAGAGGAGTACGCGATCTGGA
GCGTGCGCTGTCTCTCTTTTTGTCTCTTTTGCTCTCTCAGCAGCCGTACA
AGTCACACATGTATCTGATTAGGTGCATTCACAATACCTCTCTCTTCGCA
TGGGAACCAGCGTTTTTCACGGACTCGTCCCCCATGAGCATCAACGCGTT
AACTTCGTTCGCTGTACGAAGTCCGCGTGATTCTCTCTGACACAACACAT
GTGTACTCATGGCACGCGGCCGGTGGAACCGTTGTTCCAACTGATGCAAA
CCAATGGGTGCTGGCTCGTTGACCTCTCTTAGCGTAGCACTTGTTTCCCT
CTCAAAGCGGCCGTGACCTAACACCTGGTACGATTGCAATGTTCTCGGCT
AGTTGGCACGCATCAGGTTGCTTGCTTCCATTCGTTCAGCCATCAACACT
TTGCGTCGGTGTACCAGTAGAGCTCTTCGACGCACCGGTGCCCCTGGACG
GTGCAGAAGATGTCTGTCAGGATCCGTCATGTACATACGCCGAGTCACTT
TCTACGATGTATATGCCCGTGTTGAGCAACACGTTTCCTCCCCGAACATA
GTGACACCTCGCTCGTCGTTACGCCGATTTCGTAAGATTGACGTGTTTGA
GGACCTGCCTGCCAGACCTGGTTGATTGCCATACATGTAGGCCTTGGCCG
TCCTCAAGTGTTGCCGCCGGTTTTACATGAAATCAACTCGGAGGTGGCAT
CACTTTGTTCCACGACGTTTTACGCAAACACCCGCAGGCGTGGCGGGCGT
GCTCTCGCTCGCGGGTATCGCGGCGCTGTCTCAGCCCGCGTCAGCCGGTG
GCCTCTCTCCCGTCAGCAATAGCGACAAGTGGGCTGGGGTGAGTGAGTGT
TGCACGAGCTTGACCGGCGCGATTGTTCGACGTGTGCGGAAGGGGGTGTG
CCGGGGAGTGGGAATTTGTGCAGACCCTATCGCGTCTCTTGTGTGCAAGC
GGAGAAGGAGCACACGCCATGCGGTTTCCGCCGTCGAGACCATCGTTGGG
CGTGTACCAGTTCAGGCCAGGCACAAGCACCCCCTGCGTATCGGACAGTT
GTTTGTTTACCCTTCACACGCAGATTGGGTTCATGCGTATTGTGTTGTTG
GCTCGTTGACGGGAAGGGCACGTGTGCATATTCTGCCGTCGCGGCTTTCC
GCACCCCCTCCCCCCCCGAAAATGTTGATGGACTTCTCTGGTGGTGTTCG
GTATCATCGCTCATGCTGCGGCAGTCGCAGTATCTGGAGTTCTCTTTCAT
CTATCTACATTGGAAGCAACGTAGCACAAGGCGCGACCAAGAGATACCTT
GTATACACGAGCGAGAGTATACCAATATATACAGAAACGTCGCACACGAA
GCAGTATCAGCTGAACCGTTAACTTGTCCGTTAGAGCTAGGCGATGTGCT
GGCCAATTGTCTCTTCCAAAACGAACGCCTACGATCCCGCTCCGCGTGAT
CGATATCGATTATAATGTACCTACATGGTCCCCCCCCCCCCCCCCCCCTA
AGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGCACCCCCCCC
CCTCCCCCCCCTCGGTGCGTGTTGCGCTCAAGGTGCTGGACCCTCAGTCG
GCAGTGAAGGACTCCAACAAGATGGCGTCGGACGGGGTGAAGAAGGACCT
CGCGGCACTGAAGAACTACCAGAGTGCCACCAAGGATATTTCTGACGCCC
TGGTACGAGAGCCTTTGTTTTTTTGCTCTGGTTGTAGGCGGTGCTGGTGC
TCTTGCGCGTAAGCGTTGAGCACCCCCACAGCCTATGGTTTGTAGTCCAT
TTGTCGTGCCGTAGATGGTAGAGGTTTGGCGTGAGAGCTTTTGATCCGTT
GTTGGCGTTGATGTTGACACGGGTTTTGTTGCTGGCGCTGTTGTTTTTCA
TTCAGCACTTCCACACACCTGCGGTATTTTTCCGTCTCTAGTCTTCGGTC
TGCGCAATTTGTTCTTGTCCTTGTCGTTCCGTCTCCTCCCTAAATAGACG
CTACTGCCATGCCGTGCCCTGCCGTGTGCGGGTTCTCGAGCTTACAGATT
GCGCGTTAGCCCCACCCACCCGTTCTATGATTCTCACCCCTACTTGCAGG
CTAAGGACGTAGCCCTACCCCCTCTTTAGACCTAACTTGCAATCGAATCC
ACCCACGCTCTCTGATTGTATATACCTTGCCCCTACTTTTGCAGGCCAAG
GACCCCCAGGCGAACGTTTTGCCGAAGGTCCAGCAGACCTTCAAGTTCGC
CGAGTTCCGCCAGGTGCTCAACGGGGTGAACGACGTCTTCGACGAGGACA
CCCAGAGGGGTACCGACCTCATCATCCGGTAAGCGTTATTTAGTTCGTCT
AGGCATAGTAAGAGGGTCGAGCTTGGCTGTTTTCGTACGCGTCCACACGC
CAAGAGGAGGGGGACGGCGAAATTGTTTCCAGACTGTAGATAGAACGACT
ACAGTGGCGGCTATGTTTTGTAAAGAGAGGGTTGGGACAAACCAGTATTT
CTCATGGTCGTGACAAGTCAATTTGAGTCTTAAATCGTTACTTTGAACTC
GGTACTTTCTCGTTAATAGTCTCTCTTAAACCGTAGCCGCCACTGTACGG
TAAAGAGACCAAGATGTCTTGTTCTCGGAAAACTACGCTTTTCAGTACAT
GCCCTTCTGAGTCTTTTTACCGGGTGAAATCTCGTGAAATTTTCCTCAGG
AACATGCTTCAGGATGCCCTCGAGCTTTCGCAAGCCTCCAAGATGAAGCC
GGACGTCCCCCGGTCCGCGCGCAAGGTTTGTTGATGGGAAGGGGGCATGT
AGCCTGGTCCGTCAATCTTCGGGGGGCGGGGGCGGGGGGGCGTACTCGTG
TTTTGCATTACTTCGCTGGGTAGACCATGGACCACGCGTCCTCGAGGGCA
CGGGTCAATCCTGGCGGGAGGGGCGTTTTCCCTCGACTGAGATCGTTGGT
AGGTGGCGGTGTGATTGGCGTGAGCGTACACATCCACTCAATCTACACGG
AAATAGCGTCCGGTGCGTTTGGCAATGTTTCAACGACAGCCGTGCCGCCA
ACGGGAGAAGGACGAGGGGCCGACCCTCAAACCACCGTGTGTGGGCGGAG
AAAGCAGTGTGGTGCGAGTTGTACGACAGCAGCGAGAGCGGGGCACGGGT
AGAAAAACGACGTGCTTACCGATGCAGCATGGTCGTGCGGGGTGCGATGA
GCGAAAAATCCTTGTTGTTCAAACAACCGGAGAAGAACCATGGATGAAGA
AAACAAAACTCGTACACGTGTTGGCGCCTGTGCCCATGGCTATCGTTTTT
TTCGCGTTTCTCGCCTCTGTCCGTGCGATGTCTCCCATTCATTGGCATGT
TCGGCTGCCGTACTGACACGCCCCCCCTTTTTTTTTTGTCGTCATCGCAG
GTGGAGGTATTGACCAAGAAGTTGAAGAAGCTGGACCAGGCGTTCGACAC
CCTCAACGCGTACCTCTAGGTCGAGCGACTTGCTAACCAGCAGTACCGTA
TCCGGGTCGAAGGCGCGCTGGGGGGGGGCGATCCAGCTGAGGATTCGAAG
TTTCTCTCGGCCCACATATAGACAATTAGTGCGAAGGCAAGAAATAGGGC
CGATGCAATGGCACACCGCCTACAACATAAACATTTCCATGTGTCCGGGA
TGCGCCGCCCTTTTCCCTGGTGCCGTAATAAGGGGTCCGGTGCTTACAGT
TAGTCTCAGGGGGCACCGCGGAATGACAGCGGCTCGCCTGGGGGGCAGTT
CCAGGGGGGCAAAGGAATCGTTACAGCAGTTACGCTAATAATTGAAGTGC
TGGCCGGACTTATAGAACAGCAGATGGGGGACGACACGGCTGGTATGCCC
AACGTTTAGTTTTTTTGTGTGTGTGAAATAGTTCTTGCTAATTGCTGGCT
GGCCGCACCGCCCGTCACGCGTTGTTACGTGTAGAGACAAAAGGATGGTG
TCGTTCTGAAAGAAGCGTGTCCCGAGGGAGTGGGGTTCTGAAACGATTGT
TCCGGTGCACATGGAAACTGTGGCGGCGCCCCGTGGATCGGTGGTGCCGT
GACATCAGATTCGGGCAAGAGGATGTGTGGGAGGAGGTAGCACCCGTCTC
TTTGTACTCGAGTAAACGCGCTCAGCTAGCGTCTGGTTCCCGGGCACTAA
GTAGACTTTTAGTTTGTGCGTGTTGTAGTCGCCGTTCTGTGTCGTGTCAC
GAAACACACGGGGAGGGAGTTCGGCAGAATGTAGATGCGTGTGGGTCTGC
CGCCTATGTTCGAAAATCATCTCATCGCCCACATGCATGCGCGGGAGGCT
AGCCGGAGCGAACAACAGCGTGTTTTTCCGTTTGTGGGAACAAAAAACAA
TGTAGAACCGAGGAACCTGCTTGCCGAGATAATGGCACCAGCGCCGCTCA
CCAAAAAAAAGTGCTTGGACAAATCTGCCAATCCCAGCCCGGAGGTCTAG
AAGAGAGGAAGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1363:7375..12488+

>mRNA_E-siliculosus-1a_F_contig1363.2168.1 ID=mRNA_E-siliculosus-1a_F_contig1363.2168.1|Name=mRNA_E-siliculosus-1a_F_contig1363.2168.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1344bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1363:7375..12488+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGTCTGCGTTCCTTGCGGCCGTTCTCGCCCTCCTTTCGGTGGCCTC
CACCGACGCGTTCGTCGCGGGATCCGCGAAGCTCCCCGTACGCACAGCAG
CATCCTCTGCCCGAACAGATGAAGTCTGCGTTCCTTGCGGCCGTTCTCGC
CCTCCTTTCGGTGGCCTCCACCGACGCGTTCGTCGCGGGATCCGCGAAGC
TCCCCGTACGCACAGCAGCATCCTCTGCCCGAACAGCTGCCGTCGAGATG
AGCGCGGAACCGCAGTCGAGACAAGCGTTCCTCCAGCAAGCTGCCGTCGA
GATGAGCGCGGAACCGCAGTCGAGACAAGCGTTCCTCCAGCAAGGCGTGG
CGGGCGTGCTCTCGCTCGCGGGTATCGCGGCGCTGTCTCAGCCCGCGTCA
GCCGGTGGCCTCTCTCCCGTCAGCAATAGCGACAAGTGGGCTGGGGCGTG
GCGGGCGTGCTCTCGCTCGCGGGTATCGCGGCGCTGTCTCAGCCCGCGTC
AGCCGGTGGCCTCTCTCCCGTCAGCAATAGCGACAAGTGGGCTGGGGTGC
TGGACCCTCAGTCGGCAGTGAAGGACTCCAACAAGATGGCGTCGGACGGG
GTGAAGAAGGACCTCGCGGCACTGAAGAACTACCAGAGTGCCACCAAGGA
TATTTCTGACGCCCTGGTGCTGGACCCTCAGTCGGCAGTGAAGGACTCCA
ACAAGATGGCGTCGGACGGGGTGAAGAAGGACCTCGCGGCACTGAAGAAC
TACCAGAGTGCCACCAAGGATATTTCTGACGCCCTGGCCAAGGACCCCCA
GGCGAACGTTTTGCCGAAGGTCCAGCAGACCTTCAAGTTCGCCGAGTTCC
GCCAGGTGCTCAACGGGGTGAACGACGTCTTCGACGAGGACACCCAGAGG
GGTACCGACCTCATCATCCGGCCAAGGACCCCCAGGCGAACGTTTTGCCG
AAGGTCCAGCAGACCTTCAAGTTCGCCGAGTTCCGCCAGGTGCTCAACGG
GGTGAACGACGTCTTCGACGAGGACACCCAGAGGGGTACCGACCTCATCA
TCCGGAACATGCTTCAGGATGCCCTCGAGCTTTCGCAAGCCTCCAAGATG
AAGCCGGACGTCCCCCGGTCCGCGCGCAAGGAACATGCTTCAGGATGCCC
TCGAGCTTTCGCAAGCCTCCAAGATGAAGCCGGACGTCCCCCGGTCCGCG
CGCAAGGTGGAGGTATTGACCAAGAAGTTGAAGAAGCTGGACCAGGCGTT
CGACACCCTCAACGCGTACCTCTAGGTGGAGGTATTGACCAAGAAGTTGA
AGAAGCTGGACCAGGCGTTCGACACCCTCAACGCGTACCTCTAG
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