mRNA_E-siliculosus-1a_F_contig1362.2164.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1362.2164.1
Unique NamemRNA_E-siliculosus-1a_F_contig1362.2164.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: D7FPS0_ECTSI (Myosin heavy chain, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS0_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.310e-66
Identity = 107/108 (99.07%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVLGG 324
            MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLE+LGG
Sbjct:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEILGG 108          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A835Z8J0_9STRA (Putative myosin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J0_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.570e-47
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVLG 321
            M RVREEH+ +Q V+ +LN KIS VL+KQEGDFLAAYRAHMYTVQKELQ+LRQRV++AE  LQ+NDKVQ+LED C+WYR+EALRLDSFN+AMKKDLK M  K+ VLG
Sbjct:    1 MGRVREEHTHIQSVLGTLNSKISAVLSKQEGDFLAAYRAHMYTVQKELQSLRQRVVDAEKALQRNDKVQRLEDACEWYRREALRLDSFNSAMKKDLKRMGDKVAVLG 107          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A7S2XXS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS8_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.580e-43
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1
Query:   52 LNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            LN KIS VL+KQE DFLAAYRAHMY VQKELQ LRQR ++AEN LQKNDK+QKLE+EC+WYRKEALRLDSFNTAMKKDLKYMK KLE+L
Sbjct:    4 LNDKISGVLSKQESDFLAAYRAHMYNVQKELQALRQRAVDAENALQKNDKIQKLEEECEWYRKEALRLDSFNTAMKKDLKYMKEKLEIL 92          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A3F2RK62_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RK62_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.990e-35
Identity = 67/106 (63.21%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            M  VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMYTVQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:    1 MAVVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYTVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 106          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A6A3F344_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3F344_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.030e-32
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            M  VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTIMTKDLKYMKENLEAI 147          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A8J5J7K0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J7K0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.830e-32
Identity = 63/100 (63.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMK 300
            M  VR++H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK
Sbjct:   45 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMK 144          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A662X445_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X445_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.800e-32
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            M  VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMYTVQKEL  +R+++   E V  K +K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   45 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYTVQKELHEMREKIHRNETVENKTEKIKKIEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 150          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A225W5V9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W5V9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.170e-32
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            M  VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++KLEDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MAMVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKLEDERDWYRKEALRLDAFTTTMTKDLKYMKENLEAI 147          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A329RSS2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RSS2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.000e-31
Identity = 61/98 (62.24%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKY 294
            M  VR++H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKY
Sbjct:    1 MAIVRQKHAQLHDVVGSLSEKISSVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTKMTKDLKY 98          
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Match: A0A6A3TYV6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TYV6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.330e-31
Identity = 66/106 (62.26%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQTLRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMKGKLEVL 318
            M  VRE+H++L  VV SL++KIS VLA+QE DFLAAYRAHMY VQKEL  +R+++   E V  K++K++K+EDE DWYRKEALRLD+F T M KDLKYMK  LE +
Sbjct:   42 MALVREKHAQLHDVVGSLSEKISAVLARQERDFLAAYRAHMYNVQKELHEMREKIHRNETVENKSEKIKKIEDERDWYRKEALRLDAFTTIMTKDLKYMKENLEAI 147          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1362.2164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPS0_ECTSI1.310e-6699.07Myosin heavy chain, putative n=1 Tax=Ectocarpus si... [more]
A0A835Z8J0_9STRA8.570e-4774.77Putative myosin heavy chain n=1 Tax=Tribonema minu... [more]
A0A7S2XXS8_9STRA3.580e-4383.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3F2RK62_9STRA3.990e-3563.21Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A6A3F344_9STRA1.030e-3262.26Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A8J5J7K0_9STRA1.830e-3263.00Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A662X445_9STRA2.800e-3263.21Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225W5V9_9STRA3.170e-3263.21Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A329RSS2_9STRA1.000e-3162.24Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A6A3TYV6_9STRA1.330e-3162.26Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1362contigE-siliculosus-1a_F_contig1362:10092..11385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size327
Model size327
Exons2
Ec32 orthologEc-20_001120.1
Ec32 ortholog descriptionmyosin heavy chain, putative
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs29GIY@1,2RPR6@2759
Seed eggNOG ortholog2880.D7FPS0
Seed ortholog evalue7.7e-52
Seed ortholog score209.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.1609778-CDS-E-siliculosus-1a_F_contig1362:10091..102801622927879.1609778-CDS-E-siliculosus-1a_F_contig1362:10091..10280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 10092..10280 +
1696318719.9286044-CDS-E-siliculosus-1a_F_contig1362:10091..102801696318719.9286044-CDS-E-siliculosus-1a_F_contig1362:10091..10280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 10092..10280 +
1622927879.1739705-CDS-E-siliculosus-1a_F_contig1362:11247..113851622927879.1739705-CDS-E-siliculosus-1a_F_contig1362:11247..11385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 11248..11385 +
1696318719.9423418-CDS-E-siliculosus-1a_F_contig1362:11247..113851696318719.9423418-CDS-E-siliculosus-1a_F_contig1362:11247..11385Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1362 11248..11385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1362.2164.1prot_E-siliculosus-1a_F_contig1362.2164.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1362 10092..11385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1362.2164.1

>prot_E-siliculosus-1a_F_contig1362.2164.1 ID=prot_E-siliculosus-1a_F_contig1362.2164.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=109bp
MTRVREEHSRLQGVVVSLNKKISQVLAKQEGDFLAAYRAHMYTVQKELQT
LRQRVIEAENVLQKNDKVQKLEDECDWYRKEALRLDSFNTAMKKDLKYMK
GKLEVLGG*
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mRNA from alignment at E-siliculosus-1a_F_contig1362:10092..11385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1362.2164.1 ID=mRNA_E-siliculosus-1a_F_contig1362.2164.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1294bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1362:10092..11385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCAGGGTCCGCGAGGAACACTCCCGTCTGCAAGGGGTTGTGGTGTC GCTGAACAAGAAAATCTCACAAGTGTTGGCGAAGCAAGAGGGCGACTTTC TCGCAGCGTATAGAGCTCACATGTACACCGTGCAGAAGGAGCTGCAGACT CTCCGTCAACGCGTGATCGAAGCAGAGAATGTCCTCCAGGTGGGCGATTC AGAACCAAACCCTGAACTCTCATCGCAGGTTCTTGCTGGTGCGACCACGG GTGAATGAATGTACGCCCCGCACCCCGCGCTCCGCAGTGCCATGTATTCA AGTCCACCACCTAGTGCGTGTAGCCATAAGCGATTCTTCACACAGGACTG GGAAATGTTTCATTACACCGCTTTTTATTAACCTACACAGCTGATGTAGC AGAAACATTTTCAAAGGGAGAATTGTTACGAACTTGGGCATGGCTTGTGT CTATATAGACTATACACGGCAGTTTTGTTCCCGGCGGAGCGTGAAACATC GGCGATACATTTTGTACATGTCGGGAAGTCAACACATCTTTTTAGTACTG TACAGGCCAGTTTTGTGGTCCTCCTCTGAAAAAAGGGTTCTTTTCAACAC CGAGTGGTTGTTGGCTTTTTGAGAATCCCGAATCCTGACAAACCCACTTG ATGAAGTTCATTCTGTGCTTGCTCTCAAACACGTGCTACTGCTGTAGTAC CTGGTGTTTTGCATGAGCTGGCAATGAAAACCAGGTATCTTTTGAGGTAG CAGTCGATTTTTGCCGTCAGTTTTCTACGTTTGTTTTGCAATGTATCACA GATGCGTTCTTCTTTGTTGACCCTGGATCGGAGCTCTTCAGATACAGGGG CAAGACCATATGGATACTGTAGGCACTTGAGCGACGCTACTAAAGCGTAG GGAAAACATGCGCACTGTTGAGAAGCACGATGAGCACGCCGATCTGTCGG AAGCGTGGACCTGCTGTAGGATCAAACACAACCTCAATGGATTAGGCGTG TGCTCCGCTCGTGGAATGAGAGTATCAAACTCAAGTGGTTTATCGCTGGA AAAGGGTTACGGTTCATATGGGGGAAATGTCTTCCTCGAGATCCACCACA AATTACGTTCGGTGCCCGATCGTTTCGTCCCGCACCCTTCCACGTTTCAT TCATAGAAAAACGACAAGGTGCAAAAACTCGAGGACGAATGCGACTGGTA CCGCAAAGAAGCCCTGCGGCTCGACAGCTTCAACACGGCGATGAAGAAGG ATCTAAAATACATGAAGGGGAAGCTAGAAGTACTTGGTGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1362:10092..11385+

>mRNA_E-siliculosus-1a_F_contig1362.2164.1 ID=mRNA_E-siliculosus-1a_F_contig1362.2164.1|Name=mRNA_E-siliculosus-1a_F_contig1362.2164.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1362:10092..11385+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCAGGGTCCGCGAGGAACACTCCCGTCTGCAAGGGGTTGTGGTGTC
GCTGAACAAGAAAATCTCACAAGTGTTGGCGAAGCAAGAGGGCGACTTTC
TCGCAGCGTATAGAGCTCACATGTACACCGTGCAGAAGGAGCTGCAGACT
CTCCGTCAACGCGTGATCGAAGCAGAGAATGTCCTCCAGATGACCAGGGT
CCGCGAGGAACACTCCCGTCTGCAAGGGGTTGTGGTGTCGCTGAACAAGA
AAATCTCACAAGTGTTGGCGAAGCAAGAGGGCGACTTTCTCGCAGCGTAT
AGAGCTCACATGTACACCGTGCAGAAGGAGCTGCAGACTCTCCGTCAACG
CGTGATCGAAGCAGAGAATGTCCTCCAGAAAAACGACAAGGTGCAAAAAC
TCGAGGACGAATGCGACTGGTACCGCAAAGAAGCCCTGCGGCTCGACAGC
TTCAACACGGCGATGAAGAAGGATCTAAAATACATGAAGGGGAAGCTAGA
AGTACTTGGTGGGTGAAAAAACGACAAGGTGCAAAAACTCGAGGACGAAT
GCGACTGGTACCGCAAAGAAGCCCTGCGGCTCGACAGCTTCAACACGGCG
ATGAAGAAGGATCTAAAATACATGAAGGGGAAGCTAGAAGTACTTGGTGG
GTGA
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