mRNA_E-siliculosus-1a_F_contig136.2147.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig136.2147.1
Unique NamemRNA_E-siliculosus-1a_F_contig136.2147.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 496 bits (1276), Expect = 2.890e-172
Identity = 326/402 (81.09%), Postives = 331/402 (82.34%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDESDGAGGTLGESAAAKKERRXXXXXXXXXXXDAREGKKRDKESSAGGXXXXXXXXXXXXXXXKRDKKKEDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPPTGRSSGADASGAWERGARAPGDGPSSGGTSFSSS-QPSGRAPALAPPVPLSSGNVMDWRGLGGRGAGGRGXXXXXXXXXREGGGRXXXXXXXXXXXXXXMNSMGGMDRRR 1203
            MNVIQEI+RINERELEQG+SGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSD+SDGAGGTLGESA       XXXXXXXXXXX                XXXXXXXXXXXXX  K+D   E+KX                                       EPPTGRSSGADASGAWERGARAPGDGPSSGGT FSSS QPSGRAPALAPPVPLSSGNVMDWRGLGGR AGGRGXXXXXXXXXREG GRXXXXXXXXXXXXXXMNSMGGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSDGAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 223 bits (567), Expect = 3.720e-68
Identity = 113/184 (61.41%), Postives = 141/184 (76.63%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKA-SWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARG-EAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGS-GSSDESD 543
            MNVIQEI+RINE EL +G++G A SWH +Y+DSA+VF GG PYDL EGD+LCV SQWGE+EDINL R++ TGKSKGF FIKYE+Q+ST+LAVDNFNG++LLGR IRVDH  KY LP+ +REK E E+E     G E   E+  ++RPG AYEG +LA   N HKGVD++  P+    GS ++SD
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDDSDDGSGEDSD 185
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 221 bits (564), Expect = 8.630e-68
Identity = 107/173 (61.85%), Postives = 135/173 (78.03%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQ-----WRPGVAYEGKQLATSHNFHKGVDVFA 504
            MNV++EI++INEREL++GL+G ASWHH+YKDSAWVF GG  Y+LTEGD++CV+SQWGEIEDINL R++DTGKSKGF F+KYE+Q+STILAVDN NG  LLGR +RVDH  KY LP E+++K   ED ++   GE   E G       W+PG AYEGK++  SH   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDK---EDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.440e-67
Identity = 108/174 (62.07%), Postives = 140/174 (80.46%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSG-KASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQG 519
            MNV++EI+R+NE+EL++G +G + SWH +YKDSAWVF G  P  L+EGD+LCVMSQWGEIED++L R+K TGKSKGF F+KYE+Q+STILAVDN NGI LL RT+RVDHK KY+LP EV EKAE++++ R+  GE     GP+W+PG AYEGK+L   H+  KGVD+FA  ++G
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEG 174
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.010e-61
Identity = 104/167 (62.28%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 501
            MNVI+EI+R+NE+ELEQG+  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KD+GKS GFCFIKYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +  DE      E       + RPG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDEPVDENDEM------RGRPGHAYEGKELANKYDIHEGVDVF 161
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.380e-61
Identity = 106/167 (63.47%), Postives = 129/167 (77.25%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 501
            MNVI+EI+R+NE+ELEQG+S + SWHH Y++SAWV+ G   Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GFCFIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K   ED+E V   +A      + +PG AYEGK+LA  ++ H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDK---EDDEGVLDDDAEL----RGQPGHAYEGKELANKYDIHQGVDVF 160
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.050e-60
Identity = 106/167 (63.47%), Postives = 124/167 (74.25%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 501
            MNVI+EI+R+NE+ELEQG+S + SWHH Y+DSAWV+ GG  YDLTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V        +G   +PG AYEGK+L    + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 204 bits (520), Expect = 5.850e-60
Identity = 102/173 (58.96%), Postives = 132/173 (76.30%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGK-ASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 516
            MNVIQEI+RIN+RELE GL+G  ASWH +YK+SAWV+ G  PY LTEGDILC MSQWGEIEDIN  R+KDTGK KGF F+KYE+Q+ST+LAVDNFNGI+L+ RT+RVDH  KY LP EV++K ++ +E+    G+   +   ++ PG AY+  +LA+ ++  KG D+F   EQ
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQ-HDSSSKFGPGHAYKDMELASKYDIAKGQDLFQTEEQ 172
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 1.420e-59
Identity = 107/169 (63.31%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKE--DEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVF 501
            MNVI+EI+R+NE+ELEQG+  + SWHH Y+DSAWV+ GG  Y+LTEGDILCV SQ GEIEDINL R+KDTGKS GF FIKYEN  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K E E  D+E + RG          +PG AYEGK+LA   + H+GVDVF
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDKEENEVADDEEL-RG----------KPGHAYEGKELANKFDIHQGVDVF 158
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BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 201 bits (510), Expect = 1.700e-58
Identity = 101/173 (58.38%), Postives = 128/173 (73.99%), Query Frame = 1 
Query:    1 MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDE-ERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQ 516
            MNV+ EI+R+NERELE  +    SWH +Y +SAWVF GG P++L+EGD+LCV+SQ+GEIEDI+L R+  TGKSKGF FIK+E+Q+STILAVDN NG  LL R +RVDH  KY LP E++E ++ EDE +R  RG           PG AYEGK+LA+  + HKGVDVFA PE+
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG----------LPGHAYEGKELASDFDLHKGVDVFAAPEE 163
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig136.2147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI2.890e-17281.09RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2RL84_9STRA3.720e-6861.41Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YJH4_9STRA8.630e-6861.85RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D1V2_9STRA1.440e-6762.07RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A485KUA3_9STRA1.010e-6162.28Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X0J2_9STRA1.380e-6163.47RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4H400_9STRA1.050e-6063.47RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A7S3YEY6_HETAK5.850e-6058.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024UQN5_9STRA1.420e-5963.31Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W2N0T6_PHYPR1.700e-5858.38RRM domain-containing protein n=11 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig136contigE-siliculosus-1a_F_contig136:21066..24198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1206
Model size1206
Exons4
Ec32 orthologEc-12_000920.1
Ec32 ortholog descriptionRNA recognition motif domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC3.6.4.13
EggNOG OGsKOG0126@1,KOG0126@2759
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
KEGG koko:K07919,ko:K13107,ko:K14807
Preferred nameRBMX2
Seed eggNOG ortholog2880.D7FPK4
Seed ortholog evalue6.6e-141
Seed ortholog score507.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig136.2147.1prot_E-siliculosus-1a_F_contig136.2147.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig136 21066..24198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.530389-CDS-E-siliculosus-1a_F_contig136:21065..212871622927875.530389-CDS-E-siliculosus-1a_F_contig136:21065..21287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 21066..21287 +
1696318718.3953388-CDS-E-siliculosus-1a_F_contig136:21065..212871696318718.3953388-CDS-E-siliculosus-1a_F_contig136:21065..21287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 21066..21287 +
1622927875.5461814-CDS-E-siliculosus-1a_F_contig136:21992..221211622927875.5461814-CDS-E-siliculosus-1a_F_contig136:21992..22121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 21993..22121 +
1696318718.4048305-CDS-E-siliculosus-1a_F_contig136:21992..221211696318718.4048305-CDS-E-siliculosus-1a_F_contig136:21992..22121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 21993..22121 +
1622927875.5581496-CDS-E-siliculosus-1a_F_contig136:22545..227101622927875.5581496-CDS-E-siliculosus-1a_F_contig136:22545..22710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 22546..22710 +
1696318718.4124992-CDS-E-siliculosus-1a_F_contig136:22545..227101696318718.4124992-CDS-E-siliculosus-1a_F_contig136:22545..22710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 22546..22710 +
1622927875.576375-CDS-E-siliculosus-1a_F_contig136:23508..241981622927875.576375-CDS-E-siliculosus-1a_F_contig136:23508..24198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 23509..24198 +
1696318718.4199753-CDS-E-siliculosus-1a_F_contig136:23508..241981696318718.4199753-CDS-E-siliculosus-1a_F_contig136:23508..24198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig136 23509..24198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig136.2147.1

>prot_E-siliculosus-1a_F_contig136.2147.1 ID=prot_E-siliculosus-1a_F_contig136.2147.1|Name=mRNA_E-siliculosus-1a_F_contig136.2147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=402bp
MNVIQEIRRINERELEQGLSGKASWHHEYKDSAWVFAGGFPYDLTEGDIL
CVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLL
GRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYE
GKQLATSHNFHKGVDVFAKPEQGSGSSDESDGAGGTLGESAAAKKERREA
KRKRKEARADAREGKKRDKESSAGGDGSDGHHKKKKSKHHKRDKKKEDKK
EGRAHGKDEKTRSSEHRPAANGGRGEERVGGRHDHRRDKEPPTGRSSGAD
ASGAWERGARAPGDGPSSGGTSFSSSQPSGRAPALAPPVPLSSGNVMDWR
GLGGRGAGGRGGGRGGGRGGREGGGRGRGGPQSGGRGREGMNSMGGMDRR
R*
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mRNA from alignment at E-siliculosus-1a_F_contig136:21066..24198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig136.2147.1 ID=mRNA_E-siliculosus-1a_F_contig136.2147.1|Name=mRNA_E-siliculosus-1a_F_contig136.2147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3133bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig136:21066..24198+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATGTGATCCAAGAGATAAGGCGCATCAACGAGCGGGAGCTCGAGCA
AGGGTTGTCCGGCAAGGCCTCATGGCACCACGAGTACAAGGACAGTGCGT
GGGTCTTCGCTGGAGGCTTTCCGTACGACCTCACCGAGGGAGACATTCTT
TGCGTTATGTCACAATGGGGGGAGATCGAGGACATTAACCTGTGCCGAGA
GAAGGATACAGGGAAGTCCAAGGTATGAAGATGAGCAGGACCAGAAGGGC
AGAGCGTGCCAGTTTCGCGCTGTGCGCGTTCAGGCTTGGTATAGAGCACG
GCTGGTGGTGTATATGCGTCTAACTGCTGTATTCTCCGAATATTGTCCCC
CGATAGTGCAACACTGTTGTAGATGTCGCCTTCTCCGAATAAAGTCGTTG
CTAACGGCTTCTTCTGTACCACCGCTGTTGGCGCAACTCCTGTGACTCCT
TGGATGTCTCATTGCATTCATATTCTGCGCGACCACGCGATGACACTGAC
GACAAACTCAAGACGGAGGGACTAACCGCTTGCGTTTAGGTGTGGCGGGT
GGAGGTTGCCCCGCATTTTTTTTTTCTTCTCCTTTACACGGGGGAGCTGT
CTTTGATGTTGGTACATTGCAGCAGTGTTTTTGTGGTTAGCACCTGCTGG
CATGACGGAGACCGGAACGGTTTTTAATGTGAAGACAACAACAACAACAA
CAACAACAACAACAAAAACCTGCTGGCATCACTGACAAAAAAATCAGTGT
ATAGGCTAATGTAGACTCGAAATAAGCCCAGTACCAAGCCGGTTTCCCTC
CACTCACTGAAGACTCCAACACACACAAAAAAAAAAAATCCCCTTCGACT
GTGATAATATCTCGAACGGTAGTCTCTCTGAGTTTGTATGTATTTTCCCT
ATTCACCACCACATTTTTGGGTTGCAGGGGTTCTGCTTCATCAAGTACGA
GAACCAGAAGAGCACCATCCTCGCCGTGGACAACTTCAACGGCATCGACC
TGTTGGGTCGCACGATTCGAGTCGACCACAAGCACAAGTACTCCCTGCCC
GCCGAGGTGCGTGGAGAGAGATATAGATAGATAGAGACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGTAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGGCGGGCCCGAAGCGTCCGTGGATAGCCAATTGCACGGGGATATC
TGCGGCTGAAGCGCCGATATCTCGAAACAGCATGGTACAATACCACGCAC
GTTGCACAACTTCCTCGCCTCTACCTCTATTGTAAGAACTGCGCTCAACT
GAAAACACTGCTTGTGTTGGGTTCATGCTTTTGGTGTCCACGCTGTAGAC
CAGAGTGTGCGTTTCTCGGTTGTGCATTCGACGCGTATGTTGTGCATCAT
TGTTGCATGCGACCGTGTCGGTTCAATCAGGTGAGGGAGAAAGCGGAGAA
AGAGGACGAGGAGAGGGTCGCCCGGGGTGAGGCACCGTCGGAGAAGGGGC
CACAGTGGAGGCCTGGCGTCGCATACGAAGGGAAACAGCTGGCCACATCT
CACAACTTCCACAAGGGTGTTGACGTGTTCGCCAAACCAGAGCAGGTGTG
ACTTTGAGAGAGATCATTTGCACATTTTCAGCAGGTGGCCTTTGGAACGA
GATATTCTGTACTCTTTGTTACGACCTACTGCCGGTCGCCCCGGTAGTCT
AGTTGGTATCTTCGAAGATCTAGTGGCCACAGTTAGGGGTTCGAATCCCG
GCGTAAGCGCGCTGTTCTTGCAGAGTGAGTATTTTCTCTCGCTTCCGTTC
CTGGCCTGGGTGGAAAACGCTATTTCGTGTGTACACAGGGGGAAGAGAGT
GCTGCACTCTTTTCGCATTACAATTCGAAGGCATAGAACCGCAGCAGGGG
TGGAGAGGGGGCCTCAGGAAGAGGAACCCGTATGTGTGACTGACCACGGG
TAGGAGTAAATGACACAAATGCTGTGAGCGCTGATCTAAAGTCAAGACAC
ACAAAAATAATAAAAGCGTGATGATCAAGCACAATATACACCACAGAGAG
CAACAAGTGCGTTGGCGCGCTCGGATCGGTCGCTGGGTGTGTGATATCCA
AGGCGTGTATGTTTCAGGAAGTCATGTGTTTGAGCCGAAATTCTGACCGA
AGCCATGTTTTTGCCTCAGACCCGCGGTTGAGCAGGATGGGGGCCGTAGC
GTCCGACACAGCTTTTCCCCGAGCCCGTCTCCTTTCATGCTTGAGCTACG
CGCTGCTGTCCTCGTTCGTTTGTACCCCTCGTCTGACCGTGGGACATACG
ATGCCGGAACGGACTGCGCCTGAAACATGGTCCCAACGCTGCTGCTTCCG
TTTGATTTGGCAAACGCAAACAATTTGAAACACACACACATAGGGTTCTG
GATCGAGCGATGAAAGCGATGGTGCTGGGGGAACACTGGGCGAGTCGGCG
GCCGCGAAGAAAGAACGGCGGGAGGCAAAGCGGAAACGAAAAGAAGCTCG
AGCGGATGCGCGGGAGGGGAAGAAGAGGGACAAGGAATCCTCTGCCGGGG
GCGACGGCAGCGACGGCCACCACAAGAAGAAAAAGAGCAAACACCACAAA
AGGGACAAGAAGAAAGAGGACAAGAAGGAAGGCCGCGCCCACGGCAAGGA
CGAAAAAACCAGAAGCAGCGAACATCGACCGGCCGCAAACGGCGGGCGGG
GTGAAGAGAGGGTCGGCGGACGACACGATCATCGTCGCGACAAGGAGCCA
CCGACGGGCCGCAGCAGCGGCGCCGACGCGAGCGGGGCTTGGGAGCGAGG
TGCACGCGCGCCCGGCGATGGCCCGTCTTCCGGTGGCACCTCCTTTTCTT
CTTCGCAACCTTCAGGTCGTGCCCCAGCGTTGGCACCACCAGTCCCTCTG
TCTTCGGGCAATGTCATGGATTGGAGGGGACTGGGCGGGCGCGGCGCCGG
CGGACGAGGGGGAGGGAGGGGGGGCGGGCGGGGGGGTAGGGAGGGGGGCG
GGCGAGGCAGAGGGGGCCCGCAGAGTGGCGGGCGCGGTAGAGAAGGGATG
AACTCGATGGGGGGTATGGATCGTCGACGGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig136:21066..24198+

>mRNA_E-siliculosus-1a_F_contig136.2147.1 ID=mRNA_E-siliculosus-1a_F_contig136.2147.1|Name=mRNA_E-siliculosus-1a_F_contig136.2147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2412bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig136:21066..24198+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATGTGATCCAAGAGATAAGGCGCATCAACGAGCGGGAGCTCGAGCA
AGGGTTGTCCGGCAAGGCCTCATGGCACCACGAGTACAAGGACAGTGCGT
GGGTCTTCGCTGGAGGCTTTCCGTACGACCTCACCGAGGGAGACATTCTT
TGCGTTATGTCACAATGGGGGGAGATCGAGGACATTAACCTGTGCCGAGA
GAAGGATACAGGGAAGTCCAAGATGAATGTGATCCAAGAGATAAGGCGCA
TCAACGAGCGGGAGCTCGAGCAAGGGTTGTCCGGCAAGGCCTCATGGCAC
CACGAGTACAAGGACAGTGCGTGGGTCTTCGCTGGAGGCTTTCCGTACGA
CCTCACCGAGGGAGACATTCTTTGCGTTATGTCACAATGGGGGGAGATCG
AGGACATTAACCTGTGCCGAGAGAAGGATACAGGGAAGTCCAAGGGGTTC
TGCTTCATCAAGTACGAGAACCAGAAGAGCACCATCCTCGCCGTGGACAA
CTTCAACGGCATCGACCTGTTGGGTCGCACGATTCGAGTCGACCACAAGC
ACAAGTACTCCCTGCCCGCCGAGGGGTTCTGCTTCATCAAGTACGAGAAC
CAGAAGAGCACCATCCTCGCCGTGGACAACTTCAACGGCATCGACCTGTT
GGGTCGCACGATTCGAGTCGACCACAAGCACAAGTACTCCCTGCCCGCCG
AGGTGAGGGAGAAAGCGGAGAAAGAGGACGAGGAGAGGGTCGCCCGGGGT
GAGGCACCGTCGGAGAAGGGGCCACAGTGGAGGCCTGGCGTCGCATACGA
AGGGAAACAGCTGGCCACATCTCACAACTTCCACAAGGGTGTTGACGTGT
TCGCCAAACCAGAGCAGGTGAGGGAGAAAGCGGAGAAAGAGGACGAGGAG
AGGGTCGCCCGGGGTGAGGCACCGTCGGAGAAGGGGCCACAGTGGAGGCC
TGGCGTCGCATACGAAGGGAAACAGCTGGCCACATCTCACAACTTCCACA
AGGGTGTTGACGTGTTCGCCAAACCAGAGCAGGGTTCTGGATCGAGCGAT
GAAAGCGATGGTGCTGGGGGAACACTGGGCGAGTCGGCGGCCGCGAAGAA
AGAACGGCGGGAGGCAAAGCGGAAACGAAAAGAAGCTCGAGCGGATGCGC
GGGAGGGGAAGAAGAGGGACAAGGAATCCTCTGCCGGGGGCGACGGCAGC
GACGGCCACCACAAGAAGAAAAAGAGCAAACACCACAAAAGGGACAAGAA
GAAAGAGGACAAGAAGGAAGGCCGCGCCCACGGCAAGGACGAAAAAACCA
GAAGCAGCGAACATCGACCGGCCGCAAACGGCGGGCGGGGTGAAGAGAGG
GTCGGCGGACGACACGATCATCGTCGCGACAAGGAGCCACCGACGGGCCG
CAGCAGCGGCGCCGACGCGAGCGGGGCTTGGGAGCGAGGTGCACGCGCGC
CCGGCGATGGCCCGTCTTCCGGTGGCACCTCCTTTTCTTCTTCGCAACCT
TCAGGTCGTGCCCCAGCGTTGGCACCACCAGTCCCTCTGTCTTCGGGCAA
TGTCATGGATTGGAGGGGACTGGGCGGGCGCGGCGCCGGCGGACGAGGGG
GAGGGAGGGGGGGCGGGCGGGGGGGTAGGGAGGGGGGCGGGCGAGGCAGA
GGGGGCCCGCAGAGTGGCGGGCGCGGTAGAGAAGGGATGAACTCGATGGG
GGGTATGGATCGTCGACGGTAGGGTTCTGGATCGAGCGATGAAAGCGATG
GTGCTGGGGGAACACTGGGCGAGTCGGCGGCCGCGAAGAAAGAACGGCGG
GAGGCAAAGCGGAAACGAAAAGAAGCTCGAGCGGATGCGCGGGAGGGGAA
GAAGAGGGACAAGGAATCCTCTGCCGGGGGCGACGGCAGCGACGGCCACC
ACAAGAAGAAAAAGAGCAAACACCACAAAAGGGACAAGAAGAAAGAGGAC
AAGAAGGAAGGCCGCGCCCACGGCAAGGACGAAAAAACCAGAAGCAGCGA
ACATCGACCGGCCGCAAACGGCGGGCGGGGTGAAGAGAGGGTCGGCGGAC
GACACGATCATCGTCGCGACAAGGAGCCACCGACGGGCCGCAGCAGCGGC
GCCGACGCGAGCGGGGCTTGGGAGCGAGGTGCACGCGCGCCCGGCGATGG
CCCGTCTTCCGGTGGCACCTCCTTTTCTTCTTCGCAACCTTCAGGTCGTG
CCCCAGCGTTGGCACCACCAGTCCCTCTGTCTTCGGGCAATGTCATGGAT
TGGAGGGGACTGGGCGGGCGCGGCGCCGGCGGACGAGGGGGAGGGAGGGG
GGGCGGGCGGGGGGGTAGGGAGGGGGGCGGGCGAGGCAGAGGGGGCCCGC
AGAGTGGCGGGCGCGGTAGAGAAGGGATGAACTCGATGGGGGGTATGGAT
CGTCGACGGTAG
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