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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig136.2146.1 vs. uniprot
Match: A0A6H5KYC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC3_9PHAE) HSP 1 Score: 666 bits (1719), Expect = 3.820e-238 Identity = 350/384 (91.15%), Postives = 359/384 (93.49%), Query Frame = 3
Query: 72 MATPSRPDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGEGDSQRALGSVFHLLDRLQLFEPGQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRRPRHPAPSSPSPPLPTAQSRSPGNASTIPPSPHHASAAVGVRSASASHTTTPEGRQQRVHHVGAKEGDVDGSTGNPRHSSREGAEVAASPQGRLGDTGNGLQACLPATGGMKDGDRAGAVVSVIPEETTRATAAGEDRAGGVTTMAVGPAEYLQWLGDLSSMLVHEQWRKEELLSRVAFGSEAASARLRAHVQAHWSSRSAHSFLDQQSMDAATTAAQVVPPLKSR 1223
MATPSR DVEEEQQQTWSGSKVR GGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWR+GEGDSQRALGS FHL+DRLQLFEP QQTGGD+NLGGLEKLPGCRELLI KHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALR+PRHP P SPSP LPTAQSRSPGNA T+PPSP HASAAVGVRS S SH T P+GRQQRV HVGAKEGDVDGSTGNP+HSSREGAEVAAS QGRLGD GNGLQA LPATGGMKDGDRAGAVVS IPEETTRA A GEDRAGGVTT+ VGPAEYLQWLGDLSSMLVHEQWRKEELL RVAFG EAASARLRAHVQAHWSSRSAHSFLDQ S+DAATTAAQVVPPLKSR
Sbjct: 1 MATPSRRDVEEEQQQTWSGSKVRVGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWRKGEGDSQRALGSAFHLIDRLQLFEPDQQTGGDINLGGLEKLPGCRELLIHKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRQPRHPPPPSPSPTLPTAQSRSPGNAFTMPPSPQHASAAVGVRSTSVSHATAPKGRQQRVDHVGAKEGDVDGSTGNPQHSSREGAEVAASSQGRLGDIGNGLQAGLPATGGMKDGDRAGAVVSEIPEETTRAMATGEDRAGGVTTVVVGPAEYLQWLGDLSSMLVHEQWRKEELLLRVAFGPEAASARLRAHVQAHWSSRSAHSFLDQPSIDAATTAAQVVPPLKSR 384
BLAST of mRNA_E-siliculosus-1a_F_contig136.2146.1 vs. uniprot
Match: D7FPK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK5_ECTSI) HSP 1 Score: 577 bits (1487), Expect = 1.250e-203 Identity = 302/329 (91.79%), Postives = 306/329 (93.01%), Query Frame = 3
Query: 72 MATPSRPDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGEGDSQRALGSVFHLLDRLQLFEPGQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHRSDPARALRRPRHPAPSSPSPPLPTAQSRSPGNASTIPPSPHHASAAVGVRSASASHTTTPEGRQQRVHHVGAKEGDVDGSTGNPRHSSREGAEVAASPQGRLGDTGNGLQACLPATGGMKDGDRAGAVVSVIPEETTRATAAGEDRAGGVTTMAVGPAEYLQWLGDLSSMLVHEQWRKE 1058
MATPSR DVEEEQQQTWSGSKVRGGGVL RQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGE DSQRALGSVFHLLDRLQLFEP QQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAE WQLHRSDPARAL +PRHPAP SPSPPLPTA SRSPGNA TIPPSP HA AAVGVRS SASHTT PEGR QRVHHVGAKEGD+DGSTGNPRHSS EGAEVAASPQGRLGD GNGLQA LPATGGMK+GDRAGAVVS IP ET RA AAG DRAGGVTTM VGPAE+LQWLGDLSSMLVHEQWRKE
Sbjct: 1 MATPSRRDVEEEQQQTWSGSKVRGGGVLGRQPSPSPAKARQAQRRYRSLYHQAAKEYWAWREGENDSQRALGSVFHLLDRLQLFEPDQQTGGDVNLGGLEKLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEGWQLHRSDPARALLQPRHPAPPSPSPPLPTALSRSPGNAFTIPPSPQHAGAAVGVRSTSASHTTAPEGRLQRVHHVGAKEGDIDGSTGNPRHSSLEGAEVAASPQGRLGDIGNGLQAGLPATGGMKEGDRAGAVVSEIPGETARAMAAGGDRAGGVTTMTVGPAEHLQWLGDLSSMLVHEQWRKE 329
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1155 |
| Model size | 1530 |
| Exons | 5 |
| Ec32 ortholog | Ec-12_000930.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig136.2146.1 >prot_E-siliculosus-1a_F_contig136.2146.1 ID=prot_E-siliculosus-1a_F_contig136.2146.1|Name=mRNA_E-siliculosus-1a_F_contig136.2146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=385bp
MATPSRPDVEEEQQQTWSGSKVRGGGVLARQPSPSPAKARQAQRRYRSLY
HQAAKEYWAWREGEGDSQRALGSVFHLLDRLQLFEPGQQTGGDVNLGGLE
KLPGCRELLILKHTTELERVMRLWRALVRQMRGQVSRVEELLAEAWQLHR
SDPARALRRPRHPAPSSPSPPLPTAQSRSPGNASTIPPSPHHASAAVGVR
SASASHTTTPEGRQQRVHHVGAKEGDVDGSTGNPRHSSREGAEVAASPQG
RLGDTGNGLQACLPATGGMKDGDRAGAVVSVIPEETTRATAAGEDRAGGV
TTMAVGPAEYLQWLGDLSSMLVHEQWRKEELLSRVAFGSEAASARLRAHV
QAHWSSRSAHSFLDQQSMDAATTAAQVVPPLKSR* back to topmRNA from alignment at E-siliculosus-1a_F_contig136:17585..20907- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig136.2146.1 ID=mRNA_E-siliculosus-1a_F_contig136.2146.1|Name=mRNA_E-siliculosus-1a_F_contig136.2146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3323bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig136:17585..20907- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGTGGTTACAGCAGTTACGGCAGCGTTCGCCGCTCCATCGTTCTGAAGTC
GGTCGCTCCTCTCTGTCGTCAATGGCTACCCCTTCTCGACCCGATGTAGA
AGAGGAGCAGCAGCAAACCTGGTCAGGTTCTAAGGTTCGAGGGGGAGGGG
TCTTGGCGAGGCAACCGAGTCCGAGCCCGGCCAAGGCTAGGCAAGCACAG
CGTCGGTACCGTTCCTTGTACCACCAAGCCGCCAAAGAGGTGGAGTACAA
CATGCAATCGCAGCGGGTAGCCTGTAGCTTGATACGAGACGACTCTGTAG
TGCAAGTGCCCTTATTTCTCTTTGCTAAGCCGCCATCAAGCCTTGTGGGT
TTGAGCTGGGCTTGCTTGGTTTTGTTTCACATCTTAGGGATGCATGATGT
TAACCCAGCAGATCCGCTCATCAACGGCCGAGGGCGTTACGGGTGTGACG
ATAGATGAGATGCAGGTCTGGAAATCTGCTTGGCGTATGAAATGATAAAA
TATTTTGACCCGCGACGGCTTGGATCCTAAGCTCGCCCTCCCATGAGGTT
TGAAGGTAAGGTTTGACCCACACATTCAAGAGAGCACATCCCTGGGCCGA
GCAGGCGGTTCCAGGCCAAATTTAATATTGCTTGAAGCAAGCACCAGCTT
ACAAGTAATGAACGTGTCACGAGTGCAAGATGCTTGTGCATACCAATGGG
TCATGGGTTCGTGCTTGTTTCGTGTTTCGGTCGGGTTGTGCGGGATCACA
TCGTCAGCAGCTGGGTGAGCCCCGAAGGAGGATCCACATTTCAACGAATC
GCGAAAGGACCAAGACGAAAACACGCGGAGTACCGCCGTAGTACCGCTGG
CCGACGCACAGGACGCGTCTGACACGAAGACTACACGTGTAAGAGAGCGA
ATCTACTTGTCCCGTGGCGTTAGGCCGTTCGGCACGGCTTGCAAAGCTGG
CTAGTAACTTAAGCCGCCTTGATACAATAATACCGCCAATTTTTTTTTTT
GTGTGTACGTGTGTGTGTGTGTGCGTGCGTGCAACGCGTCTGCAGTACTG
GGCATGGCGAGAAGGAGAGGGCGACTCTCAGCGAGCTCTTGGGTCAGTGT
TTCACCTCCTTGATCGCCTCCAGCTGTTCGAGCCAGGCCAACAAACGGTA
ATTGTTTCGATCTGCACTCTGTTCGCTTCAGACGAATGAACTTGAGAAGA
AAGTGGTCCCGTGGGGTATGCGGATAACAGAGAAAGGTGAACGCTTCTTT
CGAGGTGGTAAATCTCCTGCTGGATGTTTTCGAGGGGACGACGTATCACA
CAATCATGAGTGCCGATGGCCAATCAAGCCTACAAGGCTATCAACGACCG
AGGACCTCCTCCCTCCAGGCACCGACTGCGGCGATTCATTCACACTGAAC
CCCCCTGGAGCGTTTGAGGACTTACAGGATCTTGACGCCTGCTACTGCTG
TACATTGCTGCCGCAGGGTGGGGATGTCAATCTCGGTGGATTGGAGAAAT
TGCCGGGTTGTCGGGAGCTCCTGATTCTCAAGCACACCACCGAGCTGGAG
CGAGTGATGCGCCTCTGGCGCGCCCTTGTGCGGCAGATGAGGGGGCAGGT
GCCACAGCAGTGTCCACGCTCTTGAGATCAGGAGGAATATCTGCACTCAG
CACGTGGGATGGGCGGGATACATGTTTGAGCGCCGGGCGATCGCTAGCTT
TCCGAGGACTCCTGTCGCCAGCTCATGGCAATATCTAGCGTACGCATCTG
CGGACTGCGAACCTTTTGCTACATGGCCCATGAAATTTTTTAGGAAAAGT
TGGAACTTGTGGGTTGTAGATGCAAGGCACACGTTCCTCATTTGTCATTG
ACGATCACCATGCCCGTCGCACGATTGATTTATTCGTGGGTGGCACGGAC
CCGCACCGACGTGTCTTGATCGACGGGCGGCAGGTATCTCGTGTTGAAGA
GCTTCTCGCCGAAGCCTGGCAGCTACATCGCTCCGACCCGGCTCGAGCGC
TTCGGCGACCCCGCCACCCTGCGCCATCCTCACCGTCCCCACCTCTACCG
ACGGCACAATCGCGGTCCCCCGGGAACGCCTCCACCATCCCTCCTTCCCC
GCATCACGCTAGCGCTGCTGTCGGGGTGCGGTCGGCTTCTGCAAGCCACA
CCACCACTCCGGAAGGGCGGCAGCAGCGCGTTCATCACGTCGGTGCAAAG
GAGGGCGACGTTGATGGCAGCACGGGCAATCCTCGACATTCCTCTCGAGA
AGGTGCAGAAGTCGCTGCGTCGCCTCAGGGGCGGCTGGGTGATACCGGAA
ACGGGCTGCAGGCATGTTTGCCAGCGACGGGCGGGATGAAGGACGGTGAT
CGAGCGGGAGCGGTGGTCTCAGTGATTCCCGAGGAAACCACAAGAGCGAC
GGCGGCTGGAGAAGATAGGGCGGGGGGGGTGACGACCATGGCCGTGGGGC
CTGCGGAGTACCTGCAATGGCTAGGAGATTTGTCCAGCATGTTGGTGCAT
GAACAGTGGCGAAAGGAGGTACAGAGCGTGCCGGCACCCTACTATATAGC
GCCCTCCCGTTGATCCCCCGACGGGCAGTTGTCTTGAAGTCTCCGAGTTT
ACTAGTATAAAGATTCCTGGGTAATGCTTGACCATCAAATTTATCGATTC
CCCGCGGTATGTATGAAGGTTATGCCTCGCAGAATGATGTTGCGGTATGG
ACTAGGGATACATTGGATCGAGCCACAAGCTGTTCTTCGTCCACGGGCAC
TCATATTCCGTCAAAAAATGCGCTCTTCCCAATCGCCCTCTCCTAAAACG
TCGCAAACCCGCCTATTAAACTCCCCTCTGGTCATGTCGGCTCACGTGCA
GGAACTTTTATCGCGAGTTGCGTTTGGGTCAGAGGCAGCATCAGCGCGGC
TCAGGGCCCACGTGCAAGCGCACTGGTCGTCGCGATCAGCGCACAGCTTT
CTTGACCAGCAGTCGATGGACGCGGCCACCACCGCAGCGCAGGTCGTGCC
ACCTCTCAAGAGCCGGTAGCGCTATGCAAGACGGCGCGTGTTCGCAAGAT
TGGCCCACGATTGATGGTGGTTGAGCGTGCACAGGCACACGGAACGCGGT
GGTACCGCTGTGACTGACATGGTTGTCTTCGATCAACTACGCGGAAGGAC
ATGGGGGAATGGAAACAGGATAGGTACGTATCCACGCGAAGCTGTGCCTC
TATAATAGCGCTGCCTGCCTAAGAATTATTGCATTTCGTCGTGATTGAAC
CTTTCACCGCAGAGCAAACACGCCGTGAAGGCACAGCTGTTTTTCTGTCA
CTCCTTTCGGACGTGTTGGTCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig136:17585..20907- >mRNA_E-siliculosus-1a_F_contig136.2146.1 ID=mRNA_E-siliculosus-1a_F_contig136.2146.1|Name=mRNA_E-siliculosus-1a_F_contig136.2146.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2310bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig136:17585..20907- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTACCCCTTCTCGACCCGATGTAGAAGAGGAGCAGCAGCAAACCTG
GTCAGGTTCTAAGGTTCGAGGGGGAGGGGTCTTGGCGAGGCAACCGAGTC
CGAGCCCGGCCAAGGCTAGGCAAGCACAGCGTCGGTACCGTTCCTTGTAC
CACCAAGCCGCCAAAGAGATGGCTACCCCTTCTCGACCCGATGTAGAAGA
GGAGCAGCAGCAAACCTGGTCAGGTTCTAAGGTTCGAGGGGGAGGGGTCT
TGGCGAGGCAACCGAGTCCGAGCCCGGCCAAGGCTAGGCAAGCACAGCGT
CGGTACCGTTCCTTGTACCACCAAGCCGCCAAAGAGTACTGGGCATGGCG
AGAAGGAGAGGGCGACTCTCAGCGAGCTCTTGGGTCAGTGTTTCACCTCC
TTGATCGCCTCCAGCTGTTCGAGCCAGGCCAACAAACGTACTGGGCATGG
CGAGAAGGAGAGGGCGACTCTCAGCGAGCTCTTGGGTCAGTGTTTCACCT
CCTTGATCGCCTCCAGCTGTTCGAGCCAGGCCAACAAACGGGTGGGGATG
TCAATCTCGGTGGATTGGAGAAATTGCCGGGTTGTCGGGAGCTCCTGATT
CTCAAGCACACCACCGAGCTGGAGCGAGTGATGCGCCTCTGGCGCGCCCT
TGTGCGGCAGATGAGGGGGCAGGGTGGGGATGTCAATCTCGGTGGATTGG
AGAAATTGCCGGGTTGTCGGGAGCTCCTGATTCTCAAGCACACCACCGAG
CTGGAGCGAGTGATGCGCCTCTGGCGCGCCCTTGTGCGGCAGATGAGGGG
GCAGGTATCTCGTGTTGAAGAGCTTCTCGCCGAAGCCTGGCAGCTACATC
GCTCCGACCCGGCTCGAGCGCTTCGGCGACCCCGCCACCCTGCGCCATCC
TCACCGTCCCCACCTCTACCGACGGCACAATCGCGGTCCCCCGGGAACGC
CTCCACCATCCCTCCTTCCCCGCATCACGCTAGCGCTGCTGTCGGGGTGC
GGTCGGCTTCTGCAAGCCACACCACCACTCCGGAAGGGCGGCAGCAGCGC
GTTCATCACGTCGGTGCAAAGGAGGGCGACGTTGATGGCAGCACGGGCAA
TCCTCGACATTCCTCTCGAGAAGGTGCAGAAGTCGCTGCGTCGCCTCAGG
GGCGGCTGGGTGATACCGGAAACGGGCTGCAGGCATGTTTGCCAGCGACG
GGCGGGATGAAGGACGGTGATCGAGCGGGAGCGGTGGTCTCAGTGATTCC
CGAGGAAACCACAAGAGCGACGGCGGCTGGAGAAGATAGGGCGGGGGGGG
TGACGACCATGGCCGTGGGGCCTGCGGAGTACCTGCAATGGCTAGGAGAT
TTGTCCAGCATGTTGGTGCATGAACAGTGGCGAAAGGAGGTATCTCGTGT
TGAAGAGCTTCTCGCCGAAGCCTGGCAGCTACATCGCTCCGACCCGGCTC
GAGCGCTTCGGCGACCCCGCCACCCTGCGCCATCCTCACCGTCCCCACCT
CTACCGACGGCACAATCGCGGTCCCCCGGGAACGCCTCCACCATCCCTCC
TTCCCCGCATCACGCTAGCGCTGCTGTCGGGGTGCGGTCGGCTTCTGCAA
GCCACACCACCACTCCGGAAGGGCGGCAGCAGCGCGTTCATCACGTCGGT
GCAAAGGAGGGCGACGTTGATGGCAGCACGGGCAATCCTCGACATTCCTC
TCGAGAAGGTGCAGAAGTCGCTGCGTCGCCTCAGGGGCGGCTGGGTGATA
CCGGAAACGGGCTGCAGGCATGTTTGCCAGCGACGGGCGGGATGAAGGAC
GGTGATCGAGCGGGAGCGGTGGTCTCAGTGATTCCCGAGGAAACCACAAG
AGCGACGGCGGCTGGAGAAGATAGGGCGGGGGGGGTGACGACCATGGCCG
TGGGGCCTGCGGAGTACCTGCAATGGCTAGGAGATTTGTCCAGCATGTTG
GTGCATGAACAGTGGCGAAAGGAGGAACTTTTATCGCGAGTTGCGTTTGG
GTCAGAGGCAGCATCAGCGCGGCTCAGGGCCCACGTGCAAGCGCACTGGT
CGTCGCGATCAGCGCACAGCTTTCTTGACCAGCAGTCGATGGACGCGGCC
ACCACCGCAGCGCAGGTCGTGCCACCTCTCAAGAGCCGGTAGGAACTTTT
ATCGCGAGTTGCGTTTGGGTCAGAGGCAGCATCAGCGCGGCTCAGGGCCC
ACGTGCAAGCGCACTGGTCGTCGCGATCAGCGCACAGCTTTCTTGACCAG
CAGTCGATGGACGCGGCCACCACCGCAGCGCAGGTCGTGCCACCTCTCAA
GAGCCGGTAG back to top
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