mRNA_E-siliculosus-1a_F_contig1359.2141.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1359.2141.1 vs. uniprot
Match: A0A6H5K4Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z5_9PHAE) HSP 1 Score: 1066 bits (2758), Expect = 0.000e+0 Identity = 795/1016 (78.25%), Postives = 817/1016 (80.41%), Query Frame = 1
Query: 1 MSEKSSDGAGDERQASXXXXXXXXXXXXXXXXXXXXXXXVVSQQQLLRPLPRHSLYNTKPSSSPTAASNGGSESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPASNEVSTGGVPPAAXXXXXXXXXXXXXXXQ--IVIHLQLIPCSACAASASLAHCLTARARNGDHHTPRLRVVRGKALRKRSKALLLPGEREPALGAEDGSMEDLPLTPENMSLRFRVPCDLCTTLAMCANKHHSENVRTLADMVKVPPGTGSVEYTGSHHGAGAHRSVGSVKEEAQELGGGEGGERDGGAVGVAAEXXXXXXXXXXXG----TPRTIQGRARARRRVLEVEGKRVMMPNMISICDGVVLSLYLAPISVFSERREDVPGDLEIDESMGNMSRGGYHFARMPSVTIANVLKLRALRDVISWKHNETKTVHRIVAAKVLSVWERHHPGEAKQLDELLRDGDVDKDLIFQVGNAGPTAVYKASELRMVYARRATEAPLLIAGFTEEQLNPSTAEGGEQFYADDLEEAGEEEVSDAEEGEEGAAADAAAEGMGRGKRALSSSSDAAAAGRGDYSIPTGKRAYRRRTVVGGSPPXXXXXXXXXXXXXXPKPRMRRRSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTADGNFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----------------------------------PAHEMPATAVSSCSYSXXXXXXXXPGVGXXXXXXTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GRGSKRRSLGRVEEEEGWGAAAADAGAADPYPFYRQGKKPGEAKGRRKGDWRMDGG 2922
MSEKSSDGAGDERQA+ XXXXXXXXXX +VSQQQL RPLPRHSLYNTKPSSSPTAA GGSES XXXXXXXXXXXXXXX S+EVSTGGVP XXXXXXXXXXXXXXX IVIHLQLIPCSACAASASLAHCLTAR RNGDHHTPRLRVV+GKALRKRSKALLLPGEREP LGAEDGSMEDLPLTPENMSL FRVPC+LCTTLAMCAN+HHSENVRTLADMVKVPPGTG VE TGSHHGAGAH S+GSVKEE ELGG EGGERDGGAVGVAA XXXXXXXXXXX PRT+Q R RARRRVLEVEGKRVMMPNMISICDGVVLSLYLAPIS+FSERREDVPGDLEI+ESMGNMSRGGYHFARMPSVTIANVLKLRALRDVISWKHN TKT+HRIVAAKVLSVWERHHPGEA+QLD+LLRDGDVDKDLIFQVGNAGPTAVYKASELR+VYARRA+EAPLLIAGF +EQL STAEGGEQFYADDL+EAGEEEVS D S+PTGKRAY+R++V GGSP XXXXXXXXXXX SRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTAD NFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX PAHEMP TAVSSCS XXXXXXXX X TRA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX GRGSKR S GRVEEE GWGAA DAGAADPYPFYRQGKKP + KGRRKGDWRMDGG
Sbjct: 1 MSEKSSDGAGDERQATAAXXXXXXXXXXTPAAG------IVSQQQL-RPLPRHSLYNTKPSSSPTAARTGGSESESDIHEKTQRDXXXXXXXXXXXXXXXYQS----GSDEVSTGGVPXXXXXXXXXXXXXXXXXXXXXIVIHLQLIPCSACAASASLAHCLTARDRNGDHHTPRLRVVKGKALRKRSKALLLPGEREPPLGAEDGSMEDLPLTPENMSLLFRVPCELCTTLAMCANRHHSENVRTLADMVKVPPGTGGVENTGSHHGAGAHGSIGSVKEE--ELGG-EGGERDGGAVGVAAXXXXXXXXXXXXXXXXXAPRTLQRRTRARRRVLEVEGKRVMMPNMISICDGVVLSLYLAPISIFSERREDVPGDLEINESMGNMSRGGYHFARMPSVTIANVLKLRALRDVISWKHNGTKTIHRIVAAKVLSVWERHHPGEARQLDKLLRDGDVDKDLIFQVGNAGPTAVYKASELRLVYARRASEAPLLIAGFKKEQLEASTAEGGEQFYADDLDEAGEEEVSXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXDCSVPTGKRAYKRKSVDGGSPLSPPXXXXXXXXXXXXXXXXXXXSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTADSNFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATPTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKATPLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAHEMPVTAVSSCSXXXXXXXXXXXXX-XSGRAATRASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSGATGRPAVGGXXXAAVVGRGSKRLSPGRVEEE-GWGAAT-DAGAADPYPFYRQGKKPADVKGRRKGDWRMDGG 998
BLAST of mRNA_E-siliculosus-1a_F_contig1359.2141.1 vs. uniprot
Match: D8LIL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL9_ECTSI) HSP 1 Score: 755 bits (1950), Expect = 5.320e-262 Identity = 540/602 (89.70%), Postives = 544/602 (90.37%), Query Frame = 1
Query: 1129 MGNMSRGGYHFARMPSVTIANVLKLRALRDVISWKHNETKTVHRIVAAKVLSVWERHHPGEAKQLDELLRDGDVDKDLIFQVGNAGPTAVYKASELRMVYARRATEAPLLIAGFTEEQLNPSTAEGGEQFYADDLEEAGEEEVSDAEEGEEGAAADAAAEGMGRGKRAL-SSSSDAAAAGRGDYSIPTGKRAYRRRTVVGGSPPXXXXXXXXXXXXXXPKPRMRRRSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTADGNFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPAHE---MPATAVSSCSYSXXXXXXXXPGVGXXXXXXTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGSKRRSLGRVEEEEGWGAAAADAGAADPYPFYRQGKKPGEAKGRRKGDWRMDGG 2922
MGNMSRGGYHFARMP+VTIANVLKLRALRDVISWKHNETKTVHRIVAAKVLSVWERHHPGEAKQL+ELLRDGDVDKDLIFQVGNAGPTAVYKASELR VYARRATEAPLLIAGFTEEQL STAEGGEQFYAD+LEEAGEEEVSDAE+GEE AAADA AEGMGRGKRAL SSSSDAAAAGRGDYSIPTGKRAYRRRTVVG XXXXXXXXXXXXXX SRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTADGNFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATP XXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXX XXXX MPATAVSSCSYSXXXXXXX PGVGXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GRGSKRRSLGRVEEEEGWGAAA DAGAADPYPFYRQGKKPGE KGRRKGDWRMDGG
Sbjct: 1 MGNMSRGGYHFARMPAVTIANVLKLRALRDVISWKHNETKTVHRIVAAKVLSVWERHHPGEAKQLNELLRDGDVDKDLIFQVGNAGPTAVYKASELRTVYARRATEAPLLIAGFTEEQLKASTAEGGEQFYADELEEAGEEEVSDAEDGEEKAAADAVAEGMGRGKRALNSSSSDAAAAGRGDYSIPTGKRAYRRRTVVGXXXXXXXXXXXXXXXXXXXXXXXXXXSRVKEVVASDGKCYTLPLCVREKGKKLNLYVSLRAHRVDGDSLFTDPSAENAPLQRPYGRADITRENLLALRAVRDLVYRSPTVHPIIAADAFEIWENVHAAETPRPDDDTVVISGARTADGNFVPQEKFTVGELRRLRGVERRKAVDDLLDGMLRSPSVMAGELEEATPTXXXXXXXXXXXXXXXXXERLYGXXXXXXXXXXXXXXXXSKKMKISRHKLSGGSAXXXXXXXXXXXXMPATAVSSCSYSXXXXXXXSPGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVV-GRGSKRRSLGRVEEEEGWGAAA-DAGAADPYPFYRQGKKPGEVKGRRKGDWRMDGG 600 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1359.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1359.2141.1 >prot_E-siliculosus-1a_F_contig1359.2141.1 ID=prot_E-siliculosus-1a_F_contig1359.2141.1|Name=mRNA_E-siliculosus-1a_F_contig1359.2141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1009bp MSEKSSDGAGDERQASAAGAAAAAAAAAAAAAAGTPAAGVVSQQQLLRPLback to top mRNA from alignment at E-siliculosus-1a_F_contig1359:19284..29364+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1359.2141.1 ID=mRNA_E-siliculosus-1a_F_contig1359.2141.1|Name=mRNA_E-siliculosus-1a_F_contig1359.2141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10081bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1359:19284..29364+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1359:19284..29364+ >mRNA_E-siliculosus-1a_F_contig1359.2141.1 ID=mRNA_E-siliculosus-1a_F_contig1359.2141.1|Name=mRNA_E-siliculosus-1a_F_contig1359.2141.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6054bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1359:19284..29364+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |