mRNA_E-siliculosus-1a_F_contig1358.2136.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1358.2136.1
Unique NamemRNA_E-siliculosus-1a_F_contig1358.2136.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1358.2136.1 vs. uniprot
Match: D7G055_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G055_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.230e-17
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 RCEFPTRLGLEPFVKENLAWRERAWRLRDDAGRRTLR 111
            RC+F TRLGLEPFVKENLAWRERAWRLRDD GRR LR
Sbjct:    2 RCDFHTRLGLEPFVKENLAWRERAWRLRDDTGRRALR 38
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1358.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G055_ECTSI4.230e-1789.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1358contigE-siliculosus-1a_F_contig1358:29893..30460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size114
Model size114
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927872.2599103-CDS-E-siliculosus-1a_F_contig1358:29892..299401622927872.2599103-CDS-E-siliculosus-1a_F_contig1358:29892..29940Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1358 29893..29940 +
1696318717.5056107-CDS-E-siliculosus-1a_F_contig1358:29892..299401696318717.5056107-CDS-E-siliculosus-1a_F_contig1358:29892..29940Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1358 29893..29940 +
1622927872.2779887-CDS-E-siliculosus-1a_F_contig1358:30394..304601622927872.2779887-CDS-E-siliculosus-1a_F_contig1358:30394..30460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1358 30395..30460 +
1696318717.5152328-CDS-E-siliculosus-1a_F_contig1358:30394..304601696318717.5152328-CDS-E-siliculosus-1a_F_contig1358:30394..30460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1358 30395..30460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1358.2136.1prot_E-siliculosus-1a_F_contig1358.2136.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1358 29893..30460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1358.2136.1

>prot_E-siliculosus-1a_F_contig1358.2136.1 ID=prot_E-siliculosus-1a_F_contig1358.2136.1|Name=mRNA_E-siliculosus-1a_F_contig1358.2136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=38bp
RCEFPTRLGLEPFVKENLAWRERAWRLRDDAGRRTLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1358:29893..30460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1358.2136.1 ID=mRNA_E-siliculosus-1a_F_contig1358.2136.1|Name=mRNA_E-siliculosus-1a_F_contig1358.2136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=568bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1358:29893..30460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGTGCGAGTTCCCCACCCGACTGGGCCTAGAGCCCTTCGTCAAAGAGGT
GAGGTGGGCGTGAACAGAAGTCGAAGCTGTAGCCTGGTCCTGCTGGGAAC
GAGTCCTATACCTTTGGTGGACCTCGAATCTATCGTTTCGCAAAGCAGTC
CCGGGCGGCAGCAAACAAGTGTGAATTCCCGGAGGACCGGTATTTGGTGC
TGTACGGCCACGCTTTTTTCTCACCTACCCGATAGCACGCTTGGTCGTAT
CGATGAATATATGTTCGAGGTCGGCGATTGGGCGTCAGCTTACTTAACAG
TAGCTGGTCGTCTGCATATGGCTGTCTGTCTGTCTGTTGTTGTTGTTGTG
TTGCTGTTGTTGTTTTGAATACACGTCGACGTCTATCTGAATAAAAAAGA
ATCAAGTCCTGGGCTAGTCGCTGCCGGCCCCCATGCAAGCTTACAGTACC
CTCTCCTGTCCTGCATGTCCCCGTCCTTTCCGGTGCGATTGTTGTACCGT
AGAACCTGGCTTGGCGAGAGCGCGCGTGGAGGCTGCGGGACGACGCGGGC
CGGCGGACGCTAAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1358:29893..30460+

>mRNA_E-siliculosus-1a_F_contig1358.2136.1 ID=mRNA_E-siliculosus-1a_F_contig1358.2136.1|Name=mRNA_E-siliculosus-1a_F_contig1358.2136.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1358:29893..30460+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGTGCGAGTTCCCCACCCGACTGGGCCTAGAGCCCTTCGTCAAAGAGCG
GTGCGAGTTCCCCACCCGACTGGGCCTAGAGCCCTTCGTCAAAGAGAACC
TGGCTTGGCGAGAGCGCGCGTGGAGGCTGCGGGACGACGCGGGCCGGCGG
ACGCTAAGGTAAAACCTGGCTTGGCGAGAGCGCGCGTGGAGGCTGCGGGA
CGACGCGGGCCGGCGGACGCTAAGGTAA
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