mRNA_E-siliculosus-1a_F_contig1357.2135.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: D7FM35_ECTSI (tRNA-dihydrouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM35_ECTSI) HSP 1 Score: 298 bits (764), Expect = 3.650e-98 Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPECAFGSHVRDD 434
GVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFR+AVDRAMALLPEGVLDEPVGDTPECAFGS VRDD
Sbjct: 236 GVAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFRDAVDRAMALLPEGVLDEPVGDTPECAFGSQVRDD 379
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A484ECZ8_BRELC (Dus domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECZ8_BRELC) HSP 1 Score: 76.3 bits (186), Expect = 9.010e-13 Identity = 45/129 (34.88%), Postives = 72/129 (55.81%), Query Frame = 3
Query: 12 GVMVGRAAYFDPWTFRHTDSAVFGSS-DPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGD 395
G+M+GRAAY +PW FR D +F + +P +RREI+ER ++ E+ ++ P + + KPL L +G G + F++E+S A A+ P+ RE ++ A+ +LP+ VLDE V D
Sbjct: 247 GIMIGRAAYNNPWNFRDADRLIFDADRNPNLSRREIIERYLNYAEELQEKWGSNEPLSGSPYTMATSMLMKPLLSLFNGEFGGKAFKREVS-AQWAKKGPRPE---LREMIENAIKVLPDKVLDERVED 371
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A482RAJ6_9ARCH (tRNA dihydrouridine(20/20a) synthase DusA (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RAJ6_9ARCH) HSP 1 Score: 66.6 bits (161), Expect = 2.500e-9 Identity = 46/143 (32.17%), Postives = 71/143 (49.65%), Query Frame = 3
Query: 6 VAGVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPECA--FGSHVR 428
+A VM+GRAAY +PW F D +FG +PG +RRE++ + ++ E++ E + N R L KPL L GA+G FR L+R + + REAV+ A+ + +G L V + A + H+R
Sbjct: 356 LASVMIGRAAYNNPWIFADADRQLFGMPNPGLSRREVVSKYLEYTDELLASVAPEFADMNIYRPFELA---KPLLNLFHGAKGGGKFRTTLTRNLNEKRMR------AREAVEDALLGMTDGKLPRSVQRRRQLARRWRWHLR 489
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A6P4CE90_ARADU (tRNA-dihydrouridine synthase n=8 Tax=Arachis TaxID=3817 RepID=A0A6P4CE90_ARADU) HSP 1 Score: 65.5 bits (158), Expect = 5.040e-9 Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPW-TFRHTDSAVFGSSDPGFTRREIMERC-VDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPECAFG 416
G GVMVGRAAY +PW H D+AV+G+S TRR+++E+ V + +M+ G GP L +TKPL G+ ++++ A+Q S I + +D +A++P+ VLD P+ ++ C G
Sbjct: 229 GAHGVMVGRAAYNNPWHLLGHIDTAVYGASRSSLTRRQVLEKYQVYGDSVLMKYGL--GPT--------LRDITKPLLGFFHSEPGNGLWKRKADAAIQTCSTI-------KALLDETLAVIPDSVLDSPLAES-SCGRG 350
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A6P5ZVN0_DURZI (tRNA-dihydrouridine synthase n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZVN0_DURZI) HSP 1 Score: 65.1 bits (157), Expect = 6.080e-9 Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPW-TFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTP 401
G GVMVGRAAY +PW T H D+A++G+ G TRREI+ER + ++ + P + V KPL L G+ ++++ A Q + + + + +A +P+ VLD P+ P
Sbjct: 192 GAHGVMVGRAAYNNPWRTLGHVDTAIYGAPSSGLTRREILERYQEYGDHVLGRDGNKRPN--------VRDVAKPLLNLFYSEPGNGLWKRKADFAFQHCTTM-------KSFFEETLAAIPDSVLDSPIAGVP 310
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: UPI0006849A1E (tRNA dihydrouridine(20/20a) synthase DusA n=1 Tax=Thermithiobacillus tepidarius TaxID=929 RepID=UPI0006849A1E) HSP 1 Score: 65.1 bits (157), Expect = 6.310e-9 Identity = 48/135 (35.56%), Postives = 67/135 (49.63%), Query Frame = 3
Query: 6 VAGVMVGRAAYFDPWTFRHTDSAVFGSSDP-GFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPEC 407
V GVMVGRAAY DPW D+ VFG TRR+++ R + + E + G R L +T+ + L G G+R +++ LS + + + P E +DRAMA L + VLD P DTPE
Sbjct: 224 VDGVMVGRAAYHDPWMLAQADARVFGRPPAVPLTRRQVI-RDMQAYAEDVLAGGR----------ATLHQITRHMLGLFHGEPGTRAWKRFLSTELH-RGRPGP------ELLDRAMAQLSDDVLDRPARDTPEA 340
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A6P5ZVE5_DURZI (uncharacterized protein LOC111304500 isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZVE5_DURZI) HSP 1 Score: 65.1 bits (157), Expect = 7.570e-9 Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPW-TFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTP 401
G GVMVGRAAY +PW T H D+A++G+ G TRREI+ER + ++ + P + V KPL L G+ ++++ A Q + + + + +A +P+ VLD P+ P
Sbjct: 286 GAHGVMVGRAAYNNPWRTLGHVDTAIYGAPSSGLTRREILERYQEYGDHVLGRDGNKRPN--------VRDVAKPLLNLFYSEPGNGLWKRKADFAFQHCTTM-------KSFFEETLAAIPDSVLDSPIAGVP 404
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A067CH99_SAPPC (Dus domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CH99_SAPPC) HSP 1 Score: 63.9 bits (154), Expect = 1.650e-8 Identity = 40/129 (31.01%), Postives = 63/129 (48.84%), Query Frame = 3
Query: 12 GVMVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMA-LLPEGVLDEPVGD 395
GVM+GRAAY +PW FR D +F +PGF+RREI+ +D EM + E + T+ KP+ L G G + ++ ++ A+ + + R+ V+ A+ +P VLD D
Sbjct: 236 GVMIGRAAYNNPWNFRDADRLLFDCENPGFSRREIIATYLDYAEEMQATWGKRRREVGEYA-MPTSTLLKPILNLFLGEYGGKAMKRHIANRWSAKG----EQPELRDLVETAIEECIPSAVLDATAKD 359
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A5B7BMY3_DAVIN (Putative tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like isoform X1 n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BMY3_DAVIN) HSP 1 Score: 63.5 bits (153), Expect = 2.540e-8 Identity = 42/148 (28.38%), Postives = 70/148 (47.30%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPW-TFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPECAFGSHVRDD*LV 443
G GVMVGRAAY +PW T H D+ V+G+ G TRR+++E+ ++ + GP+ + + V KPL L G+ ++++ A Q + I + + + +P+ VLD PVG+ P + L+
Sbjct: 285 GAHGVMVGRAAYHNPWYTLGHVDTVVYGAPCSGLTRRQVLEQYQVYGDSVLGK---YGPKPS------VRDVAKPLLGLFHSEPGNGLWKRKADSAFQHCTTI-------KSFFEETLVAIPDSVLDSPVGEAPSGCINAFANSKRLL 416
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Match: A0A8K0DV91_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0DV91_9ROSA) HSP 1 Score: 63.2 bits (152), Expect = 3.600e-8 Identity = 42/138 (30.43%), Postives = 66/138 (47.83%), Query Frame = 3
Query: 3 GVAGVMVGRAAYFDPWTFR-HTDSAVFGSSDPGFTRREIMERC-VDRFTEMMQEGRREGPECNRTRHLCLGTVTKPLGYLSSGARGSRTFRQELSRAVQAQSKIDPDTDDFREAVDRAMALLPEGVLDEPVGDTPECA 410
G GVMVGRAAY +PW H D+AV+G+ G TRR+I+E V + + + GRR + V KPL G+ ++++ A Q + + + D + +P+ VLD P+G+ P +
Sbjct: 229 GAHGVMVGRAAYSNPWKILGHVDTAVYGAPSSGITRRQIIEEYQVYGDSVLGKYGRRPN----------IRDVIKPLLGFFYSEPGNSLWKRKADAAFQTCTTV-------KSFFDETLVAIPDSVLDSPIGELPSAS 349 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1357.2135.1 >prot_E-siliculosus-1a_F_contig1357.2135.1 ID=prot_E-siliculosus-1a_F_contig1357.2135.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp MVGRAAYFDPWTFRHTDSAVFGSSDPGFTRREIMERCVDRFTEMMQEGRRback to top mRNA from alignment at E-siliculosus-1a_F_contig1357:31055..32665- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1357.2135.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2135.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1611bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:31055..32665- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1357:31055..32665- >mRNA_E-siliculosus-1a_F_contig1357.2135.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2135.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:31055..32665- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |