mRNA_E-siliculosus-1a_F_contig1357.2134.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: D7FM34_ECTSI (SHNi-TPR domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM34_ECTSI) HSP 1 Score: 695 bits (1794), Expect = 6.580e-244 Identity = 471/492 (95.73%), Postives = 473/492 (96.14%), Query Frame = 2
Query: 230 MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXX---GEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLALPCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLAMGVFDAMLASLKEAPEVTAAAADPSPDAASPGKENSDAPNTSNGXXXXXXXXXXXXGAQGAASPPPSAASAIEELEDVRDAIRETIDTMVSGKDMEALAEYKSGTGTTTVGFGDPSPASAFSGXXXXXXXXXXXX-------GGVAATPAAGEVTTVGFGAQQSGXXXXXXXXXXXXXXXXXXXXXXXXXXNVMVVKRKGRPAPKPA--ATAATAAPVAGVGAEAIVSPKKAKPNKE 1669
MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXX GEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTA+AKVHLRLGDLNMVNGMYNEAA EFEKCLDHRLALPCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLAMGVFDAMLASLKEAPEVTAAAADPS DAASPGKENSDAPNTSNG XXXXXXXXXXXGAQGAASPPPSAASAIEELEDVRDAIRETIDTMVSGKDMEALAEYKSGTGTTTVGFG+PSPASAFSGXXXXXXXXXXXX GGVAATPAAGEVTTVGFGAQQSGXXXXXXXXXXXXXXXXXXXXXXXXX NVMVVKRKGRPAPKPA ATA APVAGVGAEAIVSPKKAKPNKE
Sbjct: 1 MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAIAKVHLRLGDLNMVNGMYNEAADEFEKCLDHRLALPCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLAMGVFDAMLASLKEAPEVTAAAADPSADAASPGKENSDAPNTSNGSXXXXXXXXXXXGAQGAASPPPSAASAIEELEDVRDAIRETIDTMVSGKDMEALAEYKSGTGTTTVGFGNPSPASAFSGXXXXXXXXXXXXXXXXXXXGGVAATPAAGEVTTVGFGAQQSGXXXXXXXXXXXXXXXXXXXXXXXXXANVMVVKRKGRPAPKPAPAATAPMTAPVAGVGAEAIVSPKKAKPNKE 492
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: A0A7S2DN85_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DN85_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.200e-22 Identity = 81/261 (31.03%), Postives = 133/261 (50.96%), Query Frame = 2
Query: 275 DPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQE------AEEDLELAWENLEMARRIYGGLELTE-DIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLALPCRQSRGVADAHVRRAQALFY-ASTLEGAEK-DALVGQSLEQYRLAMGVFDAMLASLKEAP 1030
D + GR+ ++DG ++A+ F LL++ ++ S E+S + P+Y +YGN+LL AEES VFG+++ + A A +G++ T A P+Q+ A ED E+AWE LE+AR I+ + ++ + KVHLRLGDL +NG + +AA ++E+CL+ R + R +AD H AQ Y A+ + A++ D L QS+ Y+ + +F A+LA + +P
Sbjct: 10 DSTFIRGRQFLNDGDCDDAIELFEKLLQSVIE--SSGELSLAAGPIYMQYGNALLMKAEESSQVFGESVETKPAESGEQATGLAVDSGESEE----------------TEDLPAAGKDPSAKYPEQQQQQASDAVEDTEIAWEVLEVARGIFEKHRTSNPEVIEWLGKVHLRLGDLQKLNGNFVDAARDYERCLELRNRIIPANDRRIADVHYSLAQVHEYCAAEPDHADRADDLTQQSMTHYKSCLNIFAAILAERESSP 252
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: A0A4D9D061_9STRA (SHNi-TPR domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D061_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.540e-19 Identity = 109/398 (27.39%), Postives = 169/398 (42.46%), Query Frame = 2
Query: 257 VAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQK--------KRAMAIVEAQ-----------------------INGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLALPCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLAMGVFDAMLASLKEAPEVTAAAADPSPDAASPGKENSDAPNTSNGXXXXXXXXXXXXGAQGAASPPP----SAASAIEELEDVRDAIRETIDTMVSGKDMEALAEYKSGTG-TTTVGFGDPSPAS 1342
+AA L DP+YK G L G+ +EA+ F + S D++S + AP+Y+ YG++LL AEES +FG A+T A++K E Q + G A+ GE A P ++ ++DLE+AWENLE +R IY E D + +V+LRLGDL NG + +A ++ + L+ + SR +AD H + A YAS +E + L ++LE Y VF+ ++ ++A D D +S KE G SPPP + A ++E E++ +RETI+ + +++ A G TT+GFG P +S
Sbjct: 26 LAAVLEDPRYKQGVALCKRGQFDEALEFLGSCVALAA---SEDDVSLAAAPVYFAYGDALLSKAEESVDLFGAAMTAAKEKVGEEEEXXXXXXXXCEGQGSTSDAAXXXXXXXXXXXXXGVAMAGGASCKKAAATVSSKAIGETAYEDGDSGGEITKVGIP-EDVQDDLEVAWENLEASRVIYHKHEDMVD-PLKLGEVYLRLGDLQKANGNFTQAVDDYLRSLEIYGKVCDEDSRVIADLHYQLAMMYIYAS-VEEEQAVTLKSKALEHYIQCARVFEILVEKARKAAATAGKLGDGEEDGSSFPKEG------------------RKEGEDAVKSPPPPPKSTPAEDLKEFEEILAELRETIEA--TRQELSAAGSVAKAPGPVTTIGFGQPLASS 397
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: W2LI98_PHYPR (SHNi-TPR domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2LI98_PHYPR) HSP 1 Score: 94.0 bits (232), Expect = 7.310e-17 Identity = 74/244 (30.33%), Postives = 112/244 (45.90%), Query Frame = 2
Query: 266 TLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLA 985
TL DP+Y G L+ + RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A+ G AA G+G +EA +DLE AWE +E+AR IY + + T +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + +K+ + + L Y +A
Sbjct: 12 TLTDPRYVRGVSLLKEKRLEEAVVAFGDLLRTMCEA-EGKSDSLAVAPVYYEYGHALLSLTEVTASLFGGAV-----------------EGAAASGS----------GDGEQDA--------------KEAADDLEAAWEVMELARVIYSRYPGDQAVETQLARVYTRLGDLGLESDQFEQAKADFEKALLLRRKLLKATQAEDTTQLADLYCQLAIACIYRDSTADKDKEVVPNEELTHYVMA 213
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: A0A0P1ACD0_PLAHL (Nuclear autoantigenic sperm partial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACD0_PLAHL) HSP 1 Score: 93.6 bits (231), Expect = 9.350e-17 Identity = 72/256 (28.12%), Postives = 111/256 (43.36%), Query Frame = 2
Query: 230 MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLA 985
M T S+ + TL DP+Y G L+ + RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A+ A +A+ ++LE AWE +E+AR IY E + T + +V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + EK+ + + L Y +A
Sbjct: 1 MTTSSTAQELEKTLTDPRYVRGVLLLKEKRLEEAVMAFEDLLRTMCEA-EGKSDSLAVAPVYYEYGHALLSLTEATASLFGGAVEGAADSDEGDGEQDAR-----------------------------------------NTADELEAAWEVMELARVIYSRYPGDEAVETQLVRVYTRLGDLGLESDQFEQARADFEKALVLRKKLLKATNAEDTTQLADLYCQLAIACIYRDSTADKEKETIPNEELTHYMMA 214
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: W2H613_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2H613_PHYPR) HSP 1 Score: 94.7 bits (234), Expect = 1.990e-16 Identity = 78/260 (30.00%), Postives = 121/260 (46.54%), Query Frame = 2
Query: 218 SAAAMATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLA 985
S+ +M TE++ + TL DP+Y G L+ + RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A+ G AA G+G +EA +DLE AWE +E+AR IY + + T +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + +K+ + + L Y +A
Sbjct: 254 SSLSMTTETAQE-LEKTLTDPRYVRGVSLLKEKRLEEAVVAFGDLLRTMCEA-EGKSDSLAVAPVYYEYGHALLSLTEATASLFGGAV-----------------EGAAASGS----------GDGEQDA--------------KEAADDLEAAWEVMELARVIYSRYPGDQAVETQLARVYTRLGDLGLESDQFEQAKADFEKALLLRRKLLKATQAEDTTQLADLYCQLAIACIYRDSTADKDKEVVPNEELTHYVMA 470
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: A0A225WZK3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZK3_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.610e-16 Identity = 72/244 (29.51%), Postives = 111/244 (45.49%), Query Frame = 2
Query: 266 TLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLA 985
TL DP+Y G L+ + RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A+ A G+G +EA +DLE AWE +E+AR IY + + T +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + +K+++ + L Y +A
Sbjct: 267 TLNDPRYLRGVSLLKEKRLEEAVVAFEDLLRTMCEA-EGKSDSLAVAPVYYEYGHALLSLTEATASLFGGAVEGAASS-----------------------------GDGEQDA--------------REAADDLEAAWEVMELARVIYSRYPGDQAVETQLARVYTRLGDLGLESDQFEQAKADFEKALLLRRTLLKATKAEDTTQLADLYCQLAIACIYRDSTADKDKESVPNEELTHYVMA 466
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: G4YES5_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YES5_PHYSP) HSP 1 Score: 94.4 bits (233), Expect = 2.720e-16 Identity = 85/264 (32.20%), Postives = 120/264 (45.45%), Query Frame = 2
Query: 230 MATESSNSA----VAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFY----ASTLEGAEKDALVGQSLEQYRLA 985
MAT S SA + TL DP+Y G L+ D RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A VE NG GE +EA +DLE AWE +E+AR IY + + T +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y A + EK+A+ + L Y +A
Sbjct: 253 MATTSEPSATQQELEQTLTDPRYLRGVALLKDKRLEEAVVAFEDLLRTMCEA-EGKADSLAVAPVYYEYGHALLSLTEATASLFGGA-------------VEGAANGGG------------DDGE----------------QDAREAADDLEAAWEVMELARVIYSRFPGDKAVETQLARVYTRLGDLGLESDQFEQAKSDFEKALLLRRKLLKATKAEDTTQLADLYCQLAIACIYRDSSADKEKEGEKEAVPNEELSHYVMA 474
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: H3GMP5_PHYRM (SHNi-TPR domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMP5_PHYRM) HSP 1 Score: 90.9 bits (224), Expect = 8.450e-16 Identity = 72/244 (29.51%), Postives = 109/244 (44.67%), Query Frame = 2
Query: 266 TLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKDALVGQSLEQYRLA 985
TL DP+Y G L+ + RLEEAV F LL T + G S S+AP+YYEYG++LL E + ++FG A+ EGA ++A +DLE AWE +E+AR IY + + T +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + E++ + + L Y +A
Sbjct: 16 TLEDPRYLRGVSLLKEKRLEEAVVAFEDLLRTLCEA-EGKADSLSVAPVYYEYGHALLSLTEATASLFGGAV------------------------------------EGAAAGGDDDGEQDA-----RDAADDLEAAWEVMELARVIYARYPGDQAVETQLARVYTRLGDLGLESDQFEQAKADFEKALLLRRKLLKATKADDTTQLADLYCQLAIACIYRDSTADKEQEVVPNEELTHYVMA 217
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Match: A0A6A3UV77_9STRA (SHNi-TPR domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UV77_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.530e-15 Identity = 72/231 (31.17%), Postives = 103/231 (44.59%), Query Frame = 2
Query: 266 TLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSGDEMSPSLAPLYYEYGNSLLYNAEESGAVFGDAITDAEQKKRAMAIVEAQINGQAAXXXXXXXXXXXXXGEGATXXXXXXXXXXXAPSPDQEAEEDLELAWENLEMARRIYGGLELTEDIRTAVAKVHLRLGDLNMVNGMYNEAAGEFEKCLDHRLAL----PCRQSRGVADAHVRRAQALFYASTLEGAEKD 946
TL DP+Y G L+ D RLEEAV F LL T + G S ++AP+YYEYG++LL E + ++FG A VE NG G+G ++A +DLE AWE +E+AR IY + +A+V+ RLGDL + + + +A +FEK L R L + +AD + + A A Y + E D
Sbjct: 11 TLTDPRYLRGVALLKDKRLEEAVQAFEDLLRTLCEA-EGKADSLAVAPVYYEYGHALLSLTEATASLFGGA-------------VEGAANGNE-------------DGDGEQDA--------------RDAADDLEAAWEVMELARVIYSRFPGDAAVEMQLARVYTRLGDLGLESDQFEQAKSDFEKALLLRRKLLRASKAEDTTQLADLYCQLAIACIYRDSTADKEGD 200 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1357.2134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1357.2134.1 >prot_E-siliculosus-1a_F_contig1357.2134.1 ID=prot_E-siliculosus-1a_F_contig1357.2134.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=481bp MATESSNSAVAATLADPQYKAGRKLIDDGRLEEAVNFFSGLLETRVQVLSback to top mRNA from alignment at E-siliculosus-1a_F_contig1357:26058..30310+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1357.2134.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2134.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4253bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:26058..30310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1357:26058..30310+ >mRNA_E-siliculosus-1a_F_contig1357.2134.1 ID=mRNA_E-siliculosus-1a_F_contig1357.2134.1|Name=mRNA_E-siliculosus-1a_F_contig1357.2134.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2886bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1357:26058..30310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |